Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGAAATCAAACAAAAGACTTCTGTCTTTGATCACATCAAGCCTTCAACCACTCGAGCTTCGGTCTTCCAAAGAATGAGTATGGCCGCAATGAAAGAAGAAATCAATGTTTGACTCGACCTTTAGTCTTCCAAAGGTTAAGTGTCTCCATATCAAGAAAAAATCAAGCTTCAACATATACTTTGGATCATCTTAAAGTGGGGACAAACGATCGAAACAAAGGAAAGATGAAGATCTTGGAGACGAAAAAATTTGATGGCAAAAAGATTCACAGCCTTTTCGATCCTTCACGTATGAAGAGAAAATTATATCTTGTCATAAGTACGGAAAGT
mRNA sequence
AAAGAAATCAAACAAAAGACTTCTGTCTTTGATCACATCAAGCCTTCAACCACTCGAGCTTCGGTCTTCCAAAGAATGAGTATGGCCGCAATGAAAGAAGAACAATGTTTGACTCGACCTTTAGTCTTCCAAAGGTTAAGTGTCTCCATATCAAGAAAAAATCAAGCTTCAACATATACTTTGGATCATCTTAAAGTGGGGACAAACGATCGAAACAAAGGAAAGATGAAGATCTTGGAGACGAAAAAATTTGATGGCAAAAAGATTCACAGCCTTTTCGATCCTTCACGTATGAAGAGAAAATTATATCTTGTCATAAGTACGGAAAGT
Coding sequence (CDS)
AAAGAAATCAAACAAAAGACTTCTGTCTTTGATCACATCAAGCCTTCAACCACTCGAGCTTCGGTCTTCCAAAGAATGAGTATGGCCGCAATGAAAGAAGAACAATGTTTGACTCGACCTTTAGTCTTCCAAAGGTTAAGTGTCTCCATATCAAGAAAAAATCAAGCTTCAACATATACTTTGGATCATCTTAAAGTGGGGACAAACGATCGAAACAAAGGAAAGATGAAGATCTTGGAGACGAAAAAATTTGATGGCAAAAAGATTCACAGCCTTTTCGATCCTTCACGTATGAAGAGAAAATTATATCTTGTCATAAGTACGGAAAGT
Protein sequence
KEIKQKTSVFDHIKPSTTRASVFQRMSMAAMKEEQCLTRPLVFQRLSVSISRKNQASTYTLDHLKVGTNDRNKGKMKILETKKFDGKKIHSLFDPSRMKRKLYLVISTES
Homology
BLAST of MC11g1346 vs. NCBI nr
Match:
KAA0051228.1 (hypothetical protein E6C27_scaffold1250G00350 [Cucumis melo var. makuwa])
HSP 1 Score: 98.6 bits (244), Expect = 3.44e-23
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 0
Query: 2 EIKQKTSVFDHIKPSTTRASVFQRMSMAAMKEE-QCLT----RPLVFQRLSVSISRKNQA 61
EIKQ+TS+FDHIKP TTR+SVFQR+SMA +EE QC T R F+RLS+S S+K++
Sbjct: 68 EIKQRTSIFDHIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRP 127
Query: 62 STYTLDHLKVGTNDRNKGKMKILETKKF----DGKKIHSLFDPSRMKRKLYLVISTE 109
ST T D LK+ TND+ + +MK L+ K F D KIHS PSRMKRKL + I+T+
Sbjct: 128 STSTFDRLKM-TNDQQQREMKSLKAKPFHEENDDDKIHSRV-PSRMKRKLSIDINTK 182
BLAST of MC11g1346 vs. NCBI nr
Match:
KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 101 bits (252), Expect = 2.50e-22
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 0
Query: 2 EIKQKTSVFDHIKPSTTRASVFQRMSMAAMKEE-QCLT----RPLVFQRLSVSISRKNQA 61
EIKQ+TSVFD IKP TTR+SVFQR+SMA KEE QC T + F+RLS+SIS+K++
Sbjct: 596 EIKQRTSVFDCIKPLTTRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRP 655
Query: 62 STYTLDHLKVGTNDRNKGKMKILETKKF----DGKKIHSLFDPSRMKRKLYLVISTE 109
STYT D LK+ TND+ + +MK L+ K F D KIHS PSRMKRKL + I+TE
Sbjct: 656 STYTFDRLKM-TNDQQQREMKTLKAKPFQEENDDDKIHSRV-PSRMKRKLSVDINTE 710
BLAST of MC11g1346 vs. NCBI nr
Match:
TYK18884.1 (gag protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 96.7 bits (239), Expect = 3.73e-22
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 0
Query: 2 EIKQKTSVFDHIKPSTTRASVFQRMSMAAMKEE-QCLT----RPLVFQRLSVSISRKNQA 61
EIKQKTS+FD IKP TTR+SVFQR+SMA +EE QC T R F+RLS+S S+K++
Sbjct: 68 EIKQKTSIFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRP 127
Query: 62 STYTLDHLKVGTNDRNKGKMKILETKKF----DGKKIHSLFDPSRMKRKLYLVISTE 109
ST T D LK+ TND+ + +MK L+ K F D KIHS PSRMKRKL + I+T+
Sbjct: 128 STSTFDRLKM-TNDQQQREMKSLKAKPFHEENDDDKIHSRV-PSRMKRKLSIDINTK 182
BLAST of MC11g1346 vs. NCBI nr
Match:
KAA0046209.1 (gag protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 96.3 bits (238), Expect = 6.14e-22
Identity = 64/117 (54.70%), Postives = 82/117 (70.09%), Query Frame = 0
Query: 2 EIKQKTSVFDHIKPSTTRASVFQRMSMAAMKEE-QC----LTRPLVFQRLSVSISRKNQA 61
EI Q+TSVFD IKPSTTR+SVFQR+SMA +EE QC TR F+RLS+S S+K++
Sbjct: 68 EINQRTSVFDRIKPSTTRSSVFQRLSMAMKEEENQCPTFIYTRTSTFKRLSISTSKKDRP 127
Query: 62 STYTLDHLKVGTNDRNKGKMKILETKKF----DGKKIHSLFDPSRMKRKLYLVISTE 109
ST + D LK+ TND+ + +MK + K F D KIHS PSRMKRKL++ I+TE
Sbjct: 128 STSSFDRLKM-TNDQRQREMKSSKAKPFREENDDDKIHSCV-PSRMKRKLFVDINTE 182
BLAST of MC11g1346 vs. NCBI nr
Match:
KAA0045440.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 100 bits (249), Expect = 6.43e-22
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 0
Query: 2 EIKQKTSVFDHIKPSTTRASVFQRMSMAAMKEE-QC----LTRPLVFQRLSVSISRKNQA 61
EI Q+TSVFD IKPSTTR+SVFQR+SMA +E+ QC TR F+RLS+S S+KN+
Sbjct: 658 EINQRTSVFDRIKPSTTRSSVFQRLSMATKEEKNQCPTFIYTRTSTFKRLSISTSKKNRP 717
Query: 62 STYTLDHLKVGTNDRNKGKMKILETKKF----DGKKIHSLFDPSRMKRKLYLVISTE 109
ST D LK+ TND+ + +MK L+ K F D KIHS PSRMKRKLY+ I+TE
Sbjct: 718 STSAFDRLKM-TNDQQQREMKSLKAKPFREENDDAKIHSRI-PSRMKRKLYVDINTE 772
BLAST of MC11g1346 vs. ExPASy TrEMBL
Match:
A0A5A7U7F9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00350 PE=4 SV=1)
HSP 1 Score: 98.6 bits (244), Expect = 1.66e-23
Identity = 65/117 (55.56%), Postives = 83/117 (70.94%), Query Frame = 0
Query: 2 EIKQKTSVFDHIKPSTTRASVFQRMSMAAMKEE-QCLT----RPLVFQRLSVSISRKNQA 61
EIKQ+TS+FDHIKP TTR+SVFQR+SMA +EE QC T R F+RLS+S S+K++
Sbjct: 68 EIKQRTSIFDHIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRP 127
Query: 62 STYTLDHLKVGTNDRNKGKMKILETKKF----DGKKIHSLFDPSRMKRKLYLVISTE 109
ST T D LK+ TND+ + +MK L+ K F D KIHS PSRMKRKL + I+T+
Sbjct: 128 STSTFDRLKM-TNDQQQREMKSLKAKPFHEENDDDKIHSRV-PSRMKRKLSIDINTK 182
BLAST of MC11g1346 vs. ExPASy TrEMBL
Match:
A0A5A7SRE2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00210 PE=4 SV=1)
HSP 1 Score: 101 bits (252), Expect = 1.21e-22
Identity = 68/117 (58.12%), Postives = 84/117 (71.79%), Query Frame = 0
Query: 2 EIKQKTSVFDHIKPSTTRASVFQRMSMAAMKEE-QCLT----RPLVFQRLSVSISRKNQA 61
EIKQ+TSVFD IKP TTR+SVFQR+SMA KEE QC T + F+RLS+SIS+K++
Sbjct: 596 EIKQRTSVFDCIKPLTTRSSVFQRLSMATKKEENQCPTFTYAQTSAFKRLSISISKKHRP 655
Query: 62 STYTLDHLKVGTNDRNKGKMKILETKKF----DGKKIHSLFDPSRMKRKLYLVISTE 109
STYT D LK+ TND+ + +MK L+ K F D KIHS PSRMKRKL + I+TE
Sbjct: 656 STYTFDRLKM-TNDQQQREMKTLKAKPFQEENDDDKIHSRV-PSRMKRKLSVDINTE 710
BLAST of MC11g1346 vs. ExPASy TrEMBL
Match:
A0A5D3D5Q0 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00920 PE=4 SV=1)
HSP 1 Score: 96.7 bits (239), Expect = 1.81e-22
Identity = 65/117 (55.56%), Postives = 82/117 (70.09%), Query Frame = 0
Query: 2 EIKQKTSVFDHIKPSTTRASVFQRMSMAAMKEE-QCLT----RPLVFQRLSVSISRKNQA 61
EIKQKTS+FD IKP TTR+SVFQR+SMA +EE QC T R F+RLS+S S+K++
Sbjct: 68 EIKQKTSIFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRP 127
Query: 62 STYTLDHLKVGTNDRNKGKMKILETKKF----DGKKIHSLFDPSRMKRKLYLVISTE 109
ST T D LK+ TND+ + +MK L+ K F D KIHS PSRMKRKL + I+T+
Sbjct: 128 STSTFDRLKM-TNDQQQREMKSLKAKPFHEENDDDKIHSRV-PSRMKRKLSIDINTK 182
BLAST of MC11g1346 vs. ExPASy TrEMBL
Match:
A0A5A7TY80 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8039G00020 PE=4 SV=1)
HSP 1 Score: 96.3 bits (238), Expect = 2.97e-22
Identity = 64/117 (54.70%), Postives = 82/117 (70.09%), Query Frame = 0
Query: 2 EIKQKTSVFDHIKPSTTRASVFQRMSMAAMKEE-QC----LTRPLVFQRLSVSISRKNQA 61
EI Q+TSVFD IKPSTTR+SVFQR+SMA +EE QC TR F+RLS+S S+K++
Sbjct: 68 EINQRTSVFDRIKPSTTRSSVFQRLSMAMKEEENQCPTFIYTRTSTFKRLSISTSKKDRP 127
Query: 62 STYTLDHLKVGTNDRNKGKMKILETKKF----DGKKIHSLFDPSRMKRKLYLVISTE 109
ST + D LK+ TND+ + +MK + K F D KIHS PSRMKRKL++ I+TE
Sbjct: 128 STSSFDRLKM-TNDQRQREMKSSKAKPFREENDDDKIHSCV-PSRMKRKLFVDINTE 182
BLAST of MC11g1346 vs. ExPASy TrEMBL
Match:
A0A5A7TQK6 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold294G00400 PE=4 SV=1)
HSP 1 Score: 100 bits (249), Expect = 3.11e-22
Identity = 66/117 (56.41%), Postives = 82/117 (70.09%), Query Frame = 0
Query: 2 EIKQKTSVFDHIKPSTTRASVFQRMSMAAMKEE-QC----LTRPLVFQRLSVSISRKNQA 61
EI Q+TSVFD IKPSTTR+SVFQR+SMA +E+ QC TR F+RLS+S S+KN+
Sbjct: 658 EINQRTSVFDRIKPSTTRSSVFQRLSMATKEEKNQCPTFIYTRTSTFKRLSISTSKKNRP 717
Query: 62 STYTLDHLKVGTNDRNKGKMKILETKKF----DGKKIHSLFDPSRMKRKLYLVISTE 109
ST D LK+ TND+ + +MK L+ K F D KIHS PSRMKRKLY+ I+TE
Sbjct: 718 STSAFDRLKM-TNDQQQREMKSLKAKPFREENDDAKIHSRI-PSRMKRKLYVDINTE 772
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0051228.1 | 3.44e-23 | 55.56 | hypothetical protein E6C27_scaffold1250G00350 [Cucumis melo var. makuwa] | [more] |
| KAA0032121.1 | 2.50e-22 | 58.12 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK18884.1 | 3.73e-22 | 55.56 | gag protease polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0046209.1 | 6.14e-22 | 54.70 | gag protease polyprotein [Cucumis melo var. makuwa] | [more] |
| KAA0045440.1 | 6.43e-22 | 56.41 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U7F9 | 1.66e-23 | 55.56 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7SRE2 | 1.21e-22 | 58.12 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5D3D5Q0 | 1.81e-22 | 55.56 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... | [more] |
| A0A5A7TY80 | 2.97e-22 | 54.70 | Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... | [more] |
| A0A5A7TQK6 | 3.11e-22 | 56.41 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
