MC11g1321 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1321
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	MC11: 16073955 .. 16074164 (-)
RNA-Seq Expression	MC11g1321
Synteny	MC11g1321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACGAAATTAATACGTTGTGCAACGTTGGCGGGAAGCATCTTCACAGCCTTCATCAAATGTACAAAGTGTCTACTCCTGCCCATGGCCCAAGGCATAGAGGACGACGTGAAGTTATCTATCATAGGGTTGAGGACATTCCACCGTTTACACAGACACAAAATGATGCTGGTCTGTCCACGCCTATGATCATGATACCGACTCCTGGTTCT

mRNA sequence

GACGAAATTAATACGTTGTGCAACGTTGGCGGGAAGCATCTTCACAGCCTTCATCAAATGTACAAAGTGTCTACTCCTGCCCATGGCCCAAGGCATAGAGGACGACGTGAAGTTATCTATCATAGGGTTGAGGACATTCCACCGTTTACACAGACACAAAATGATGCTGGTCTGTCCACGCCTATGATCATGATACCGACTCCTGGTTCT

Coding sequence (CDS)

GACGAAATTAATACGTTGTGCAACGTTGGCGGGAAGCATCTTCACAGCCTTCATCAAATGTACAAAGTGTCTACTCCTGCCCATGGCCCAAGGCATAGAGGACGACGTGAAGTTATCTATCATAGGGTTGAGGACATTCCACCGTTTACACAGACACAAAATGATGCTGGTCTGTCCACGCCTATGATCATGATACCGACTCCTGGTTCT

Protein sequence

DEINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGS

Homology

[Close]

BLAST of MC11g1321 vs. NCBI nr
Match: XP_022149984.1 (serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 1.55e-16
Identity = 44/66 (66.67%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 20  MYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQNDAGLSTPMIM 70
           MY VSTPA GPR RGRR               EVIYH VEDIPPFTQTQ+DAG STPM M
Sbjct: 330 MYNVSTPARGPRLRGRRQVDQDAPIELDDPVPEVIYHNVEDIPPFTQTQDDAGSSTPMFM 389

[Close]

BLAST of MC11g1321 vs. NCBI nr
Match: XP_022152034.1 (disease resistance protein RGA2-like [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 1.50e-13
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 11  GKHLHSLHQMYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQND 70
           G+HL  LHQMY+V  P H    RGRR               E IYH V+ +PPF +TQND
Sbjct: 857 GRHLQRLHQMYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQND 916

[Close]

BLAST of MC11g1321 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.17e-07
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 2   EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQN 61
           ++  +CN   +++  +H MY +S     P HRGR  V       +YH VE++PP TQTQ+
Sbjct: 155 QVLNICNNNKRYMEEIHNMYDLSIVP-PPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 214

Query: 62  DAGLSTPMIMIPTPGS 70
             G  +PM M+PT G+
Sbjct: 215 QTGYGSPMTMMPTFGA 229

[Close]

BLAST of MC11g1321 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.20e-07
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 2   EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQN 61
           ++  +CN   +++  +H MY +S     P HRGR  V       +YH VE++PP TQTQ+
Sbjct: 164 QVLNICNNNKRYMEEIHNMYDLSIVP-PPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 223

Query: 62  DAGLSTPMIMIPTPGS 70
             G  +PM M+PT G+
Sbjct: 224 QTGYGSPMTMMPTFGA 238

[Close]

BLAST of MC11g1321 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 6.14e-07
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 2   EINTLCNVGGKHLHSLHQMYKVSTPAHGPR-HRGRREV-------IYHRVEDIPPFTQTQ 61
           ++  +CN   +H+  +H MY +  P   P+ HRGR +V       +YH VE++ P TQ Q
Sbjct: 51  QVLDICNNNKRHMEEIHNMYHL--PIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQ 110

Query: 62  NDAGLSTPMIMIPTPG 69
           N  G  +PMIM+PT G
Sbjct: 111 NQTGYGSPMIMMPTFG 124

[Close]

BLAST of MC11g1321 vs. ExPASy TrEMBL
Match: A0A6J1D8N6 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111018266 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.51e-17
Identity = 44/66 (66.67%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 20  MYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQNDAGLSTPMIM 70
           MY VSTPA GPR RGRR               EVIYH VEDIPPFTQTQ+DAG STPM M
Sbjct: 330 MYNVSTPARGPRLRGRRQVDQDAPIELDDPVPEVIYHNVEDIPPFTQTQDDAGSSTPMFM 389

[Close]

BLAST of MC11g1321 vs. ExPASy TrEMBL
Match: A0A6J1DEU3 (disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111019843 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.25e-14
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 11  GKHLHSLHQMYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQND 70
           G+HL  LHQMY+V  P H    RGRR               E IYH V+ +PPF +TQND
Sbjct: 857 GRHLQRLHQMYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQND 916

[Close]

BLAST of MC11g1321 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.66e-08
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 2   EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQN 61
           ++  +CN   +++  +H MY +S     P HRGR  V       +YH VE++PP TQTQ+
Sbjct: 155 QVLNICNNNKRYMEEIHNMYDLSIVP-PPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 214

Query: 62  DAGLSTPMIMIPTPGS 70
             G  +PM M+PT G+
Sbjct: 215 QTGYGSPMTMMPTFGA 229

[Close]

BLAST of MC11g1321 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.81e-08
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 2   EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQN 61
           ++  +CN   +++  +H MY +S     P HRGR  V       +YH VE++PP TQTQ+
Sbjct: 164 QVLNICNNNKRYMEEIHNMYDLSIVP-PPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 223

Query: 62  DAGLSTPMIMIPTPGS 70
             G  +PM M+PT G+
Sbjct: 224 QTGYGSPMTMMPTFGA 238

[Close]

BLAST of MC11g1321 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.97e-07
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 2   EINTLCNVGGKHLHSLHQMYKVSTPAHGPR-HRGRREV-------IYHRVEDIPPFTQTQ 61
           ++  +CN   +H+  +H MY +  P   P+ HRGR +V       +YH VE++ P TQ Q
Sbjct: 51  QVLDICNNNKRHMEEIHNMYHL--PIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQ 110

Query: 62  NDAGLSTPMIMIPTPG 69
           N  G  +PMIM+PT G
Sbjct: 111 NQTGYGSPMIMMPTFG 124

The following BLAST results are available for this feature:

BLAST of MC11g1321 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1321 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149984.1	1.55e-16	66.67	serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia]	[more]
XP_022152034.1	1.50e-13	49.33	disease resistance protein RGA2-like [Momordica charantia]	[more]
TYK11193.1	1.17e-07	38.16	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0038951.1	1.20e-07	38.16	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0025972.1	6.14e-07	39.47	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of MC11g1321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D8N6	7.51e-17	66.67	serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ...	[more]
A0A6J1DEU3	7.25e-14	49.33	disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5D3CH23	5.66e-08	38.16	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7TBF8	5.81e-08	38.16	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7SLF8	2.97e-07	39.47	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of MC11g1321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1321.1	MC11g1321.1	mRNA