MC11g1321 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g1321
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
LocationMC11: 16073955 .. 16074164 (-)
RNA-Seq ExpressionMC11g1321
SyntenyMC11g1321
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GACGAAATTAATACGTTGTGCAACGTTGGCGGGAAGCATCTTCACAGCCTTCATCAAATGTACAAAGTGTCTACTCCTGCCCATGGCCCAAGGCATAGAGGACGACGTGAAGTTATCTATCATAGGGTTGAGGACATTCCACCGTTTACACAGACACAAAATGATGCTGGTCTGTCCACGCCTATGATCATGATACCGACTCCTGGTTCT

mRNA sequence

GACGAAATTAATACGTTGTGCAACGTTGGCGGGAAGCATCTTCACAGCCTTCATCAAATGTACAAAGTGTCTACTCCTGCCCATGGCCCAAGGCATAGAGGACGACGTGAAGTTATCTATCATAGGGTTGAGGACATTCCACCGTTTACACAGACACAAAATGATGCTGGTCTGTCCACGCCTATGATCATGATACCGACTCCTGGTTCT

Coding sequence (CDS)

GACGAAATTAATACGTTGTGCAACGTTGGCGGGAAGCATCTTCACAGCCTTCATCAAATGTACAAAGTGTCTACTCCTGCCCATGGCCCAAGGCATAGAGGACGACGTGAAGTTATCTATCATAGGGTTGAGGACATTCCACCGTTTACACAGACACAAAATGATGCTGGTCTGTCCACGCCTATGATCATGATACCGACTCCTGGTTCT

Protein sequence

DEINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREVIYHRVEDIPPFTQTQNDAGLSTPMIMIPTPGS
Homology
BLAST of MC11g1321 vs. NCBI nr
Match: XP_022149984.1 (serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 1.55e-16
Identity = 44/66 (66.67%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 20  MYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQNDAGLSTPMIM 70
           MY VSTPA GPR RGRR               EVIYH VEDIPPFTQTQ+DAG STPM M
Sbjct: 330 MYNVSTPARGPRLRGRRQVDQDAPIELDDPVPEVIYHNVEDIPPFTQTQDDAGSSTPMFM 389

BLAST of MC11g1321 vs. NCBI nr
Match: XP_022152034.1 (disease resistance protein RGA2-like [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 1.50e-13
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 0

Query: 11  GKHLHSLHQMYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQND 70
           G+HL  LHQMY+V  P H    RGRR               E IYH V+ +PPF +TQND
Sbjct: 857 GRHLQRLHQMYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQND 916

BLAST of MC11g1321 vs. NCBI nr
Match: TYK11193.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.17e-07
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 2   EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQN 61
           ++  +CN   +++  +H MY +S     P HRGR  V       +YH VE++PP TQTQ+
Sbjct: 155 QVLNICNNNKRYMEEIHNMYDLSIVP-PPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 214

Query: 62  DAGLSTPMIMIPTPGS 70
             G  +PM M+PT G+
Sbjct: 215 QTGYGSPMTMMPTFGA 229

BLAST of MC11g1321 vs. NCBI nr
Match: KAA0038951.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.20e-07
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 2   EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQN 61
           ++  +CN   +++  +H MY +S     P HRGR  V       +YH VE++PP TQTQ+
Sbjct: 164 QVLNICNNNKRYMEEIHNMYDLSIVP-PPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 223

Query: 62  DAGLSTPMIMIPTPGS 70
             G  +PM M+PT G+
Sbjct: 224 QTGYGSPMTMMPTFGA 238

BLAST of MC11g1321 vs. NCBI nr
Match: KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 6.14e-07
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 2   EINTLCNVGGKHLHSLHQMYKVSTPAHGPR-HRGRREV-------IYHRVEDIPPFTQTQ 61
           ++  +CN   +H+  +H MY +  P   P+ HRGR +V       +YH VE++ P TQ Q
Sbjct: 51  QVLDICNNNKRHMEEIHNMYHL--PIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQ 110

Query: 62  NDAGLSTPMIMIPTPG 69
           N  G  +PMIM+PT G
Sbjct: 111 NQTGYGSPMIMMPTFG 124

BLAST of MC11g1321 vs. ExPASy TrEMBL
Match: A0A6J1D8N6 (serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia OX=3673 GN=LOC111018266 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.51e-17
Identity = 44/66 (66.67%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 20  MYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQNDAGLSTPMIM 70
           MY VSTPA GPR RGRR               EVIYH VEDIPPFTQTQ+DAG STPM M
Sbjct: 330 MYNVSTPARGPRLRGRRQVDQDAPIELDDPVPEVIYHNVEDIPPFTQTQDDAGSSTPMFM 389

BLAST of MC11g1321 vs. ExPASy TrEMBL
Match: A0A6J1DEU3 (disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111019843 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.25e-14
Identity = 37/75 (49.33%), Postives = 43/75 (57.33%), Query Frame = 0

Query: 11  GKHLHSLHQMYKVSTPAHGPRHRGRR---------------EVIYHRVEDIPPFTQTQND 70
           G+HL  LHQMY+V  P H    RGRR               E IYH V+ +PPF +TQND
Sbjct: 857 GRHLQRLHQMYRVPIPTHSHTRRGRRQLEQDAPNEPNIPEPEAIYHNVDGVPPFIKTQND 916

BLAST of MC11g1321 vs. ExPASy TrEMBL
Match: A0A5D3CH23 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00320 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.66e-08
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 2   EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQN 61
           ++  +CN   +++  +H MY +S     P HRGR  V       +YH VE++PP TQTQ+
Sbjct: 155 QVLNICNNNKRYMEEIHNMYDLSIVP-PPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 214

Query: 62  DAGLSTPMIMIPTPGS 70
             G  +PM M+PT G+
Sbjct: 215 QTGYGSPMTMMPTFGA 229

BLAST of MC11g1321 vs. ExPASy TrEMBL
Match: A0A5A7TBF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00270 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.81e-08
Identity = 29/76 (38.16%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 2   EINTLCNVGGKHLHSLHQMYKVSTPAHGPRHRGRREV-------IYHRVEDIPPFTQTQN 61
           ++  +CN   +++  +H MY +S     P HRGR  V       +YH VE++PP TQTQ+
Sbjct: 164 QVLNICNNNKRYMEEIHNMYDLSIVP-PPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQS 223

Query: 62  DAGLSTPMIMIPTPGS 70
             G  +PM M+PT G+
Sbjct: 224 QTGYGSPMTMMPTFGA 238

BLAST of MC11g1321 vs. ExPASy TrEMBL
Match: A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.97e-07
Identity = 30/76 (39.47%), Postives = 44/76 (57.89%), Query Frame = 0

Query: 2   EINTLCNVGGKHLHSLHQMYKVSTPAHGPR-HRGRREV-------IYHRVEDIPPFTQTQ 61
           ++  +CN   +H+  +H MY +  P   P+ HRGR +V       +YH VE++ P TQ Q
Sbjct: 51  QVLDICNNNKRHMEEIHNMYHL--PIVPPQIHRGRVQVEEAELDEVYHNVEEMTPTTQKQ 110

Query: 62  NDAGLSTPMIMIPTPG 69
           N  G  +PMIM+PT G
Sbjct: 111 NQTGYGSPMIMMPTFG 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022149984.11.55e-1666.67serine/threonine-protein phosphatase 7 long form homolog [Momordica charantia][more]
XP_022152034.11.50e-1349.33disease resistance protein RGA2-like [Momordica charantia][more]
TYK11193.11.17e-0738.16mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0038951.11.20e-0738.16mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0025972.16.14e-0739.47mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
Match NameE-valueIdentityDescription
A0A6J1D8N67.51e-1766.67serine/threonine-protein phosphatase 7 long form homolog OS=Momordica charantia ... [more]
A0A6J1DEU37.25e-1449.33disease resistance protein RGA2-like OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5D3CH235.66e-0838.16Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TBF85.81e-0838.16Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7SLF82.97e-0739.47Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g1321.1MC11g1321.1mRNA