MC11g1307 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1307
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	30S ribosomal protein S16-like
Location	MC11: 15755526 .. 15755642 (-)
RNA-Seq Expression	MC11g1307
Synteny	MC11g1307

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGTCGAGGTTTGGCTGCAAGAACAAACCATTTTACTGGGTAATGCCTGCCAATAGCCAATCTCCCAAAGACGGCAAGCATCTCAAGGTTCTAGGCTACTATAATCCACTGCCAGGG

mRNA sequence

TTGTCGAGGTTTGGCTGCAAGAACAAACCATTTTACTGGGTAATGCCTGCCAATAGCCAATCTCCCAAAGACGGCAAGCATCTCAAGGTTCTAGGCTACTATAATCCACTGCCAGGG

Coding sequence (CDS)

TTGTCGAGGTTTGGCTGCAAGAACAAACCATTTTACTGGGTAATGCCTGCCAATAGCCAATCTCCCAAAGACGGCAAGCATCTCAAGGTTCTAGGCTACTATAATCCACTGCCAGGG

Protein sequence

LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG

Homology

[Close]

BLAST of MC11g1307 vs. ExPASy Swiss-Prot
Match: Q9LTS6 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS16-2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.4e-13
Identity = 30/39 (76.92%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG 40
          LSRFGCKN+PF+ VM A+S+SP+DGKHL+VLGY+NPLPG
Sbjct: 7  LSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPG 45

[Close]

BLAST of MC11g1307 vs. ExPASy Swiss-Prot
Match: O65686 (30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS16-1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-07
Identity = 21/39 (53.85%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG 40
          L+R GCK++PFY V+ A+ +S +DGK ++VLG+Y+PL G
Sbjct: 7  LARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQG 45

[Close]

BLAST of MC11g1307 vs. ExPASy Swiss-Prot
Match: A4XLF4 (30S ribosomal protein S16 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=rpsP PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.0e-07
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPL 38
          L R G KN PFY ++ A+S+SP+DGK +  +GYYNPL
Sbjct: 7  LKRMGAKNNPFYRIVVADSRSPRDGKTIDEIGYYNPL 43

[Close]

BLAST of MC11g1307 vs. ExPASy Swiss-Prot
Match: B2V4E2 (30S ribosomal protein S16 OS=Clostridium botulinum (strain Alaska E43 / Type E3) OX=508767 GN=rpsP PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-06
Identity = 19/37 (51.35%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPL 38
          L R GCK  PFY ++ A+S+SP+DG+ ++ +GYYNP+
Sbjct: 7  LRRMGCKKAPFYRIVVADSRSPRDGRFIEEIGYYNPI 43

[Close]

BLAST of MC11g1307 vs. ExPASy Swiss-Prot
Match: B2TJ28 (30S ribosomal protein S16 OS=Clostridium botulinum (strain Eklund 17B / Type B) OX=935198 GN=rpsP PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-06
Identity = 19/37 (51.35%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPL 38
          L R GCK  PFY ++ A+S+SP+DG+ ++ +GYYNP+
Sbjct: 7  LRRMGCKKAPFYRIVVADSRSPRDGRFIEEIGYYNPI 43

[Close]

BLAST of MC11g1307 vs. NCBI nr
Match: PPR83850.1 (hypothetical protein GOBAR_AA36858 [Gossypium barbadense])

HSP 1 Score: 80.9 bits (198), Expect = 6.99e-19
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG 39
          LSRFGCKNKPFY VM ANS+SP+DGKHL+VLGYYNPLPG
Sbjct: 7  LSRFGCKNKPFYRVMAANSRSPRDGKHLEVLGYYNPLPG 45

[Close]

BLAST of MC11g1307 vs. NCBI nr
Match: EEF28258.1 (mitochondrial ribosomal protein S16, putative [Ricinus communis])

HSP 1 Score: 79.7 bits (195), Expect = 3.37e-18
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG 39
          LSRFGCKN+PFY VM ANS+SP+DGKHL+VLGYYNPLPG
Sbjct: 7  LSRFGCKNRPFYRVMAANSRSPRDGKHLEVLGYYNPLPG 45

[Close]

BLAST of MC11g1307 vs. NCBI nr
Match: MBA0812271.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 78.6 bits (192), Expect = 3.98e-18
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLP 38
          LSRFGCKNKPFY VM ANS+SP+DGKHL+VLGYYNPLP
Sbjct: 7  LSRFGCKNKPFYRVMAANSRSPRDGKHLEVLGYYNPLP 44

[Close]

BLAST of MC11g1307 vs. NCBI nr
Match: XP_022754871.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Durio zibethinus])

HSP 1 Score: 80.5 bits (197), Expect = 4.82e-18
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG 39
          LSRFGCKNKPFY VM ANS+SP+DGKHL++LGYYNPLPG
Sbjct: 7  LSRFGCKNKPFYRVMAANSRSPRDGKHLEILGYYNPLPG 45

[Close]

BLAST of MC11g1307 vs. NCBI nr
Match: QID92315.1 (ribosomal protein S16 [Delphinium maackianum])

HSP 1 Score: 80.9 bits (198), Expect = 4.86e-18
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG 39
          LSRFGCKNKPFY VM ANS+SP+DGKHL+VLGYYNPLPG
Sbjct: 7  LSRFGCKNKPFYRVMAANSRSPRDGKHLEVLGYYNPLPG 45

[Close]

BLAST of MC11g1307 vs. ExPASy TrEMBL
Match: A0A2P5VYD4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA36858 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 3.38e-19
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG 39
          LSRFGCKNKPFY VM ANS+SP+DGKHL+VLGYYNPLPG
Sbjct: 7  LSRFGCKNKPFYRVMAANSRSPRDGKHLEVLGYYNPLPG 45

[Close]

BLAST of MC11g1307 vs. ExPASy TrEMBL
Match: B9T7A2 (Mitochondrial ribosomal protein S16, putative OS=Ricinus communis OX=3988 GN=RCOM_0004330 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.63e-18
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG 39
          LSRFGCKN+PFY VM ANS+SP+DGKHL+VLGYYNPLPG
Sbjct: 7  LSRFGCKNRPFYRVMAANSRSPRDGKHLEVLGYYNPLPG 45

[Close]

BLAST of MC11g1307 vs. ExPASy TrEMBL
Match: A0A7J9HQY4 (Uncharacterized protein (Fragment) OS=Gossypium harknessii OX=34285 GN=Gohar_026253 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.93e-18
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLP 38
          LSRFGCKNKPFY VM ANS+SP+DGKHL+VLGYYNPLP
Sbjct: 7  LSRFGCKNKPFYRVMAANSRSPRDGKHLEVLGYYNPLP 44

[Close]

BLAST of MC11g1307 vs. ExPASy TrEMBL
Match: A0A6P5ZR43 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Durio zibethinus OX=66656 GN=LOC111303102 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.34e-18
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG 39
          LSRFGCKNKPFY VM ANS+SP+DGKHL++LGYYNPLPG
Sbjct: 7  LSRFGCKNKPFYRVMAANSRSPRDGKHLEILGYYNPLPG 45

[Close]

BLAST of MC11g1307 vs. ExPASy TrEMBL
Match: A0A6G6CIF1 (Ribosomal protein S16 OS=Delphinium maackianum OX=1127172 GN=rps16 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.36e-18
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG 39
          LSRFGCKNKPFY VM ANS+SP+DGKHL+VLGYYNPLPG
Sbjct: 7  LSRFGCKNKPFYRVMAANSRSPRDGKHLEVLGYYNPLPG 45

[Close]

BLAST of MC11g1307 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 73.9 bits (180), Expect = 3.1e-14
Identity = 30/39 (76.92%), Postives = 37/39 (94.87%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG 40
          LSRFGCKN+PF+ VM A+S+SP+DGKHL+VLGY+NPLPG
Sbjct: 7  LSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPG 45

[Close]

BLAST of MC11g1307 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-08
Identity = 21/39 (53.85%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 1  LSRFGCKNKPFYWVMPANSQSPKDGKHLKVLGYYNPLPG 40
          L+R GCK++PFY V+ A+ +S +DGK ++VLG+Y+PL G
Sbjct: 7  LARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQG 45

The following BLAST results are available for this feature:

BLAST of MC11g1307 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTS6	4.4e-13	76.92	30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana...	[more]
O65686	3.6e-07	53.85	30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
A4XLF4	8.0e-07	56.76	30S ribosomal protein S16 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 4...	[more]
B2V4E2	1.0e-06	51.35	30S ribosomal protein S16 OS=Clostridium botulinum (strain Alaska E43 / Type E3)...	[more]
B2TJ28	1.0e-06	51.35	30S ribosomal protein S16 OS=Clostridium botulinum (strain Eklund 17B / Type B) ...	[more]

BLAST of MC11g1307 vs. NCBI nr


Match Name	E-value	Identity	Description
PPR83850.1	6.99e-19	87.18	hypothetical protein GOBAR_AA36858 [Gossypium barbadense]	[more]
EEF28258.1	3.37e-18	84.62	mitochondrial ribosomal protein S16, putative [Ricinus communis]	[more]
MBA0812271.1	3.98e-18	86.84	hypothetical protein [Gossypium harknessii]	[more]
XP_022754871.1	4.82e-18	84.62	30S ribosomal protein S16-2, chloroplastic/mitochondrial [Durio zibethinus]	[more]
QID92315.1	4.86e-18	87.18	ribosomal protein S16 [Delphinium maackianum]	[more]

BLAST of MC11g1307 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5VYD4	3.38e-19	87.18	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA36858 PE=3 SV...	[more]
B9T7A2	1.63e-18	84.62	Mitochondrial ribosomal protein S16, putative OS=Ricinus communis OX=3988 GN=RCO...	[more]
A0A7J9HQY4	1.93e-18	86.84	Uncharacterized protein (Fragment) OS=Gossypium harknessii OX=34285 GN=Gohar_026...	[more]
A0A6P5ZR43	2.34e-18	84.62	30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Durio zibethinus OX=...	[more]
A0A6G6CIF1	2.36e-18	87.18	Ribosomal protein S16 OS=Delphinium maackianum OX=1127172 GN=rps16 PE=3 SV=1	[more]

BLAST of MC11g1307 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56940.1	3.1e-14	76.92	Ribosomal protein S16 family protein	[more]
AT4G34620.1	2.5e-08	53.85	small subunit ribosomal protein 16	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000307	Ribosomal protein S16	PFAM	PF00886	Ribosomal_S16	coord: 3..38 e-value: 2.5E-11 score: 43.5
IPR000307	Ribosomal protein S16	PANTHER	PTHR12919	30S RIBOSOMAL PROTEIN S16	coord: 1..38
IPR023803	Ribosomal protein S16 domain superfamily	GENE3D	3.30.1320.10		coord: 1..39 e-value: 1.3E-14 score: 56.0
IPR023803	Ribosomal protein S16 domain superfamily	SUPERFAMILY	54565	Ribosomal protein S16	coord: 1..38
None	No IPR available	PANTHER	PTHR12919:SF35	30S RIBOSOMAL PROTEIN S16-LIKE	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1307.1	MC11g1307.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome