MC11g1300 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1300
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 15578108 .. 15578311 (+)
RNA-Seq Expression	MC11g1300
Synteny	MC11g1300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGACTTAGACAAGGAAGTGACAAAAGGGGGGAGAATCATAGTTGTAATTGACGAGAAGCACGATAAGTCAATATGTGCAAATGCTACATGGTTCTCGAATGCTATAAGATCTATCATCAAAGAAAATTTTAACTCGATGGTGTGCACGAAGTGGAAGGAGGTACTGAAGGAAATGATAGGAAAAGTCATCAAACGCGTAATC

mRNA sequence

GTTGACTTAGACAAGGAAGTGACAAAAGGGGGGAGAATCATAGTTGTAATTGACGAGAAGCACGATAAGTCAATATGTGCAAATGCTACATGGTTCTCGAATGCTATAAGATCTATCATCAAAGAAAATTTTAACTCGATGGTGTGCACGAAGTGGAAGGAGGTACTGAAGGAAATGATAGGAAAAGTCATCAAACGCGTAATC

Coding sequence (CDS)

GTTGACTTAGACAAGGAAGTGACAAAAGGGGGGAGAATCATAGTTGTAATTGACGAGAAGCACGATAAGTCAATATGTGCAAATGCTACATGGTTCTCGAATGCTATAAGATCTATCATCAAAGAAAATTTTAACTCGATGGTGTGCACGAAGTGGAAGGAGGTACTGAAGGAAATGATAGGAAAAGTCATCAAACGCGTAATC

Protein sequence

VDLDKEVTKGGRIIVVIDEKHDKSICANATWFSNAIRSIIKENFNSMVCTKWKEVLKEMIGKVIKRVI

Homology

[Close]

BLAST of MC11g1300 vs. NCBI nr
Match: XP_038887413.1 (uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida])

HSP 1 Score: 49.7 bits (117), Expect = 9.14e-05
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1   VDLDKEVTKGGRIIVVIDEKHDKSICANATWFSNAIRSIIKENFNSMVCTKWKEVLKEMI 60
           ++LD+ V   GRI + IDE+  K +CANAT FSNAI +I + N   + C  W +V KE+ 
Sbjct: 389 LELDRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIAR-NTIPLRCKDWSDVSKEVR 448

Query: 61  GKVIKRVI 68
             V+ +++
Sbjct: 449 DLVVDQLL 455

[Close]

BLAST of MC11g1300 vs. NCBI nr
Match: XP_038887411.1 (poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412.1 poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida])

HSP 1 Score: 49.7 bits (117), Expect = 9.17e-05
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1   VDLDKEVTKGGRIIVVIDEKHDKSICANATWFSNAIRSIIKENFNSMVCTKWKEVLKEMI 60
           ++LD+ V   GRI + IDE+  K +CANAT FSNAI +I + N   + C  W +V KE+ 
Sbjct: 577 LELDRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIAR-NTIPLRCKDWSDVSKEVR 636

Query: 61  GKVIKRVI 68
             V+ +++
Sbjct: 637 DLVVDQLL 643

[Close]

BLAST of MC11g1300 vs. NCBI nr
Match: XP_038887410.1 (poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida])

HSP 1 Score: 49.7 bits (117), Expect = 9.18e-05
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1   VDLDKEVTKGGRIIVVIDEKHDKSICANATWFSNAIRSIIKENFNSMVCTKWKEVLKEMI 60
           ++LD+ V   GRI + IDE+  K +CANAT FSNAI +I + N   + C  W +V KE+ 
Sbjct: 577 LELDRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIAR-NTIPLRCKDWSDVSKEVR 636

Query: 61  GKVIKRVI 68
             V+ +++
Sbjct: 637 DLVVDQLL 643

[Close]

BLAST of MC11g1300 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 49.7 bits (117), Expect = 9.18e-05
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1   VDLDKEVTKGGRIIVVIDEKHDKSICANATWFSNAIRSIIKENFNSMVCTKWKEVLKEMI 60
           ++LD+ V   GRI + IDE+  K +CANAT FSNAI +I + N   + C  W +V KE+ 
Sbjct: 577 LELDRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIAR-NTIPLRCKDWSDVSKEVR 636

Query: 61  GKVIKRVI 68
             V+ +++
Sbjct: 637 DLVVDQLL 643

[Close]

BLAST of MC11g1300 vs. NCBI nr
Match: XP_038887408.1 (poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 49.7 bits (117), Expect = 9.19e-05
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 1   VDLDKEVTKGGRIIVVIDEKHDKSICANATWFSNAIRSIIKENFNSMVCTKWKEVLKEMI 60
           ++LD+ V   GRI + IDE+  K +CANAT FSNAI +I + N   + C  W +V KE+ 
Sbjct: 577 LELDRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIAR-NTIPLRCKDWSDVSKEVR 636

Query: 61  GKVIKRVI 68
             V+ +++
Sbjct: 637 DLVVDQLL 643

[Close]

BLAST of MC11g1300 vs. ExPASy TrEMBL
Match: A0A6J1DTP1 (uncharacterized protein LOC111023906 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023906 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 7.36e-04
Identity = 22/52 (42.31%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 17 IDEKHDKSICANATWFSNAIRSIIKENFNSMVCTKWKEVLKEMIGKVIKRVI 68
          +DE   K IC NAT  SNAIRSI++ENF+  + ++W +V  E+     +R++
Sbjct: 1  MDEFSQKPICKNATRMSNAIRSIVRENFDPALYSRWLDVPMEVRDAAKQRIV 52

The following BLAST results are available for this feature:

BLAST of MC11g1300 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887413.1	9.14e-05	41.18	uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida]	[more]
XP_038887411.1	9.17e-05	41.18	poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412...	[more]
XP_038887410.1	9.18e-05	41.18	poly [ADP-ribose] polymerase 1-like isoform X3 [Benincasa hispida]	[more]
XP_038887409.1	9.18e-05	41.18	poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida]	[more]
XP_038887408.1	9.19e-05	41.18	poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida]	[more]

BLAST of MC11g1300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTP1	7.36e-04	42.31	uncharacterized protein LOC111023906 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of MC11g1300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1300.1	MC11g1300.1	mRNA