MC11g1290 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1290
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 15198324 .. 15198569 (-)
RNA-Seq Expression	MC11g1290
Synteny	MC11g1290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAACAACAAGCAAAAGAAGTCTCACTCTTTCTCAATCTTCAACTTTTTCAAATCCAAAAGGGGGAGAGAAGGAGGCCATTACAACCATAGCAGCATTTGGGACGGGACGTCGAGCATGAGTAAGGTGTGGCCGAGCGACGAGGATAAAGCTCACCGTTGGGTTGCTGAGCCCGGTATTGACAGAAAGGCCAAAGATTACATCGATAGGATCTATCATAAACGTATTTTAGAAAACGAGCGCCAA

mRNA sequence

GGCAACAACAAGCAAAAGAAGTCTCACTCTTTCTCAATCTTCAACTTTTTCAAATCCAAAAGGGGGAGAGAAGGAGGCCATTACAACCATAGCAGCATTTGGGACGGGACGTCGAGCATGAGTAAGGTGTGGCCGAGCGACGAGGATAAAGCTCACCGTTGGGTTGCTGAGCCCGGTATTGACAGAAAGGCCAAAGATTACATCGATAGGATCTATCATAAACGTATTTTAGAAAACGAGCGCCAA

Coding sequence (CDS)

GGCAACAACAAGCAAAAGAAGTCTCACTCTTTCTCAATCTTCAACTTTTTCAAATCCAAAAGGGGGAGAGAAGGAGGCCATTACAACCATAGCAGCATTTGGGACGGGACGTCGAGCATGAGTAAGGTGTGGCCGAGCGACGAGGATAAAGCTCACCGTTGGGTTGCTGAGCCCGGTATTGACAGAAAGGCCAAAGATTACATCGATAGGATCTATCATAAACGTATTTTAGAAAACGAGCGCCAA

Protein sequence

GNNKQKKSHSFSIFNFFKSKRGREGGHYNHSSIWDGTSSMSKVWPSDEDKAHRWVAEPGIDRKAKDYIDRIYHKRILENERQ

Homology

[Close]

BLAST of MC11g1290 vs. NCBI nr
Match: KAG6592314.1 (hypothetical protein SDJN03_14660, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 128 bits (322), Expect = 1.51e-36
Identity = 61/83 (73.49%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1  GNNKQKKSHS-FSIFNFFKSKRGREGGHYNHSSIWDGTSSMSKVWPSDEDKAHRWVAEPG 60
          GNN+ KK+HS FSIFNFFK KRGR+  H +HS  WD     SKVWPSDEDK HRWVAEPG
Sbjct: 3  GNNRSKKTHSSFSIFNFFKFKRGRKEDHSDHSGCWDEMPRSSKVWPSDEDKMHRWVAEPG 62

Query: 61 IDRKAKDYIDRIYHKRILENERQ 82
          IDRKAKDYIDRIY  R+LE+ERQ
Sbjct: 63 IDRKAKDYIDRIYRNRVLESERQ 85

[Close]

BLAST of MC11g1290 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 127 bits (318), Expect = 6.14e-36
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  GNNKQKKSHS-FSIFNFFKSKRGREGGHYNHSSIW-DGTSSMSKVWPSDEDKAHRWVAEP 60
          G N+QKKSHS FSIF+FFKSKRGR+G HY+H   W D     +KVWPSDEDKAH W+AEP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 61 GIDRKAKDYIDRIYHKRILENERQ 82
          GIDRKAKDYIDRIY  R+ E+ERQ
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQ 85

[Close]

BLAST of MC11g1290 vs. NCBI nr
Match: KAG6592316.1 (hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126 bits (316), Expect = 1.24e-35
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 1  GNNKQKKSHS-FSIFNFFKSKRGREGGHYNHSSIWDGTSSMSKVWPSDEDKAHRWVAEPG 60
          GNN+ KK+HS FSIFNFFK +RGR+  H +HS  WD     +KVWPSDEDK HRWVAEPG
Sbjct: 3  GNNRSKKAHSSFSIFNFFKFRRGRKEDHCDHSGCWDEMPRSNKVWPSDEDKMHRWVAEPG 62

Query: 61 IDRKAKDYIDRIYHKRILENERQ 82
          IDRKAKDYIDRIY  R+LE+ERQ
Sbjct: 63 IDRKAKDYIDRIYRNRVLESERQ 85

[Close]

BLAST of MC11g1290 vs. NCBI nr
Match: KAG6592306.1 (hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126 bits (316), Expect = 1.24e-35
Identity = 59/83 (71.08%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1  GNNKQKKSHS-FSIFNFFKSKRGREGGHYNHSSIWDGTSSMSKVWPSDEDKAHRWVAEPG 60
          GNN+ KK+HS FSIFNFFKSK+ R+  H +HSS WD      KVWPSDEDK HRWVAEPG
Sbjct: 3  GNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHSSCWDEMPRSGKVWPSDEDKTHRWVAEPG 62

Query: 61 IDRKAKDYIDRIYHKRILENERQ 82
          IDRKAKDYIDRIY  R+ E+ERQ
Sbjct: 63 IDRKAKDYIDRIYRNRVFESERQ 85

[Close]

BLAST of MC11g1290 vs. NCBI nr
Match: KAG6592308.1 (hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124 bits (311), Expect = 7.16e-35
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1  GNNKQKKSHS-FSIFNFFKSKRGREGGHYNHSSIWDGTSSMSKVWPSDEDKAHRWVAEPG 60
          GNN+ KK+HS FSIFNFFKS+R R+  H +HS  WD     SK+WPSDEDK HRWVAEPG
Sbjct: 3  GNNRSKKAHSSFSIFNFFKSRRSRKEDHCDHSGGWDEIPRSSKIWPSDEDKIHRWVAEPG 62

Query: 61 IDRKAKDYIDRIYHKRILENERQ 82
          IDRKAKDYIDRIY  R+ E+ERQ
Sbjct: 63 IDRKAKDYIDRIYRNRVFESERQ 85

[Close]

BLAST of MC11g1290 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 127 bits (318), Expect = 2.97e-36
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  GNNKQKKSHS-FSIFNFFKSKRGREGGHYNHSSIW-DGTSSMSKVWPSDEDKAHRWVAEP 60
          G N+QKKSHS FSIF+FFKSKRGR+G HY+H   W D     +KVWPSDEDKAH W+AEP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 61 GIDRKAKDYIDRIYHKRILENERQ 82
          GIDRKAKDYIDRIY  R+ E+ERQ
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQ 85

[Close]

BLAST of MC11g1290 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 126 bits (316), Expect = 5.99e-36
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  GNNKQKKSHS-FSIFNFFKSKRGREGGHYNHSSIW-DGTSSMSKVWPSDEDKAHRWVAEP 60
          G N+QKKSHS FSIF+FFKS+RGR+G HY+H   W D     +KVWPSDEDKAH WVAEP
Sbjct: 2  GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 61 GIDRKAKDYIDRIYHKRILENERQ 82
          GIDRKAKDYIDRIY  R+ E+ERQ
Sbjct: 62 GIDRKAKDYIDRIYRNRVFESERQ 85

[Close]

BLAST of MC11g1290 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 4.92e-35
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 1  GNNKQKKSHS-FSIFNFFKSKRGREGGHYNHSSIWDGTSSMSKVWPSDEDKAHRWVAEPG 60
          G+++QKK+HS FSIF+FFKSKRGR+G  Y H + W+   S SKVWPSDEDK +RWVAEPG
Sbjct: 3  GSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWEDVPSSSKVWPSDEDKGYRWVAEPG 62

Query: 61 IDRKAKDYIDRIYHKRILENERQ 82
          IDRKAKDYIDRIY  R+ E ERQ
Sbjct: 63 IDRKAKDYIDRIYKNRVFETERQ 85

[Close]

BLAST of MC11g1290 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 7.20e-35
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  GNNKQKKSH-SFSIFNFFKSKRGREGGHYNHS-SIWDGTSSMSKVWPSDEDKAHRWVAEP 60
          GNN+QKK+H SFSIF+FFKS+RGR+G H NHS S  D      KVWPSDEDKAH WVAEP
Sbjct: 3  GNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 61 GIDRKAKDYIDRIYHKRILENERQ 82
          GIDRKAKDYIDRIY  R+ E+ERQ
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQ 86

[Close]

BLAST of MC11g1290 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 2.93e-34
Identity = 61/84 (72.62%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  GNNKQKKSHS-FSIFNFFKSKRGREGGHYNHS-SIWDGTSSMSKVWPSDEDKAHRWVAEP 60
          GNN+QKKSHS FSIF+FFKS+RGR+G + NHS S  D      KVWPSDEDKAH WVAEP
Sbjct: 3  GNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVAEP 62

Query: 61 GIDRKAKDYIDRIYHKRILENERQ 82
          GIDRKAKDYIDRIY  R+ E+ERQ
Sbjct: 63 GIDRKAKDYIDRIYRNRVFESERQ 86

[Close]

BLAST of MC11g1290 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 4.4e-10
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 1  GNNKQKKSHSFSIFNFFKSKRGREGGHYNHSSIWDGTSSMSKVWPSDEDKAHRWVAEPGI 60
          G N+   S  FS+F+FFK++R            WD      K   SDEDK + WVAEPGI
Sbjct: 3  GKNRSHSSKRFSLFSFFKTRRSH---RVEADGSWDDFGYTRKAMASDEDKRY-WVAEPGI 62

Query: 61 DRKAKDYIDRIYHKRILENERQ 83
          DRKA  +I + +  R+ E+ERQ
Sbjct: 63 DRKASAFIAKFHATRVSESERQ 80

[Close]

BLAST of MC11g1290 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-08
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 34 WDGTSSMSKVWPSDEDKAHRWVAEPGIDRKAKDYIDRIYHKRILENERQ 83
          WD      K W SDEDK + WVAEPGIDRKA  +I + +  R+ E+ERQ
Sbjct: 17 WDDVIYTRKAWASDEDKRY-WVAEPGIDRKASAFIAKFHASRVSESERQ 64

The following BLAST results are available for this feature:

BLAST of MC11g1290 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6592314.1	1.51e-36	73.49	hypothetical protein SDJN03_14660, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN45870.1	6.14e-36	71.43	hypothetical protein Csa_004960 [Cucumis sativus]	[more]
KAG6592316.1	1.24e-35	71.08	hypothetical protein SDJN03_14662, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592306.1	1.24e-35	71.08	hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6592308.1	7.16e-35	69.88	hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MC11g1290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7Y2	2.97e-36	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1	[more]
A0A0A0KBW1	5.99e-36	71.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1	[more]
A0A0A0K8W0	4.92e-35	69.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1	[more]
A0A0A0KAK6	7.20e-35	72.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1	[more]
A0A5A7SWT9	2.93e-34	72.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MC11g1290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05858.1	4.4e-10	42.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G26620.1	4.1e-08	53.06	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33511:SF17	RIBOSOMAL PROTEIN S12	coord: 1..82
None	No IPR available	PANTHER	PTHR33511	OS06G0632400 PROTEIN	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1290.1	MC11g1290.1	mRNA