MC11g1222 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g1222
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionTy1-copia retrotransposon protein
LocationMC11: 12252519 .. 12252629 (-)
RNA-Seq ExpressionMC11g1222
SyntenyMC11g1222
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTATTGCCTTATCTCTCTAAATTTGATCCTCTTGATGGAACTAATTACAAAATGCTGATCCAAAAACTTTTCATCTTCTTTGAACAATTGAAGGTTGACCATGCTTTG

mRNA sequence

AAAGTATTGCCTTATCTCTCTAAATTTGATCCTCTTGATGGAACTAATTACAAAATGCTGATCCAAAAACTTTTCATCTTCTTTGAACAATTGAAGGTTGACCATGCTTTG

Coding sequence (CDS)

AAAGTATTGCCTTATCTCTCTAAATTTGATCCTCTTGATGGAACTAATTACAAAATGCTGATCCAAAAACTTTTCATCTTCTTTGAACAATTGAAGGTTGACCATGCTTTG

Protein sequence

KVLPYLSKFDPLDGTNYKMLIQKLFIFFEQLKVDHAL
Homology
[Close]
BLAST of MC11g1222 vs. NCBI nr
Match: TYK04337.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 3.72e-08
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1  KVLPYLSKFDPLDGTNYKMLIQKLFIFFEQLKVDHAL 37
          K+LP LSK +PLDGTNY+   QKL IFFEQL+VD+ L
Sbjct: 8  KILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC11g1222 vs. NCBI nr
Match: KAA0044882.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 4.39e-08
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1  KVLPYLSKFDPLDGTNYKMLIQKLFIFFEQLKVDHAL 37
          K+LP LSK +PLDGTNY+   QKL IFFEQL+VD+ L
Sbjct: 8  KILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC11g1222 vs. NCBI nr
Match: KAA0031694.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 4.39e-08
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1  KVLPYLSKFDPLDGTNYKMLIQKLFIFFEQLKVDHAL 37
          K+LP LSK +PLDGTNY+   QKL IFFEQL+VD+ L
Sbjct: 8  KILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC11g1222 vs. NCBI nr
Match: KAA0067000.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYJ96809.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 6.68e-08
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1  KVLPYLSKFDPLDGTNYKMLIQKLFIFFEQLKVDHAL 37
          K+LP LSK +PLDGTNY+   QKL IFFEQL+VD+ L
Sbjct: 8  KILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC11g1222 vs. NCBI nr
Match: KAA0049792.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 7.54e-08
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1  KVLPYLSKFDPLDGTNYKMLIQKLFIFFEQLKVDHAL 37
          K+LP LSK +PLDGTNY+   QKL IFFEQL+VD+ L
Sbjct: 8  KILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC11g1222 vs. ExPASy TrEMBL
Match: A0A5D3BXT2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3354G00010 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.80e-08
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1  KVLPYLSKFDPLDGTNYKMLIQKLFIFFEQLKVDHAL 37
          K+LP LSK +PLDGTNY+   QKL IFFEQL+VD+ L
Sbjct: 8  KILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC11g1222 vs. ExPASy TrEMBL
Match: A0A5A7SKK3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004780 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.13e-08
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1  KVLPYLSKFDPLDGTNYKMLIQKLFIFFEQLKVDHAL 37
          K+LP LSK +PLDGTNY+   QKL IFFEQL+VD+ L
Sbjct: 8  KILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC11g1222 vs. ExPASy TrEMBL
Match: A0A5A7TNG2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G001750 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.13e-08
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1  KVLPYLSKFDPLDGTNYKMLIQKLFIFFEQLKVDHAL 37
          K+LP LSK +PLDGTNY+   QKL IFFEQL+VD+ L
Sbjct: 8  KILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC11g1222 vs. ExPASy TrEMBL
Match: A0A5A7VIG3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00310 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.23e-08
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1  KVLPYLSKFDPLDGTNYKMLIQKLFIFFEQLKVDHAL 37
          K+LP LSK +PLDGTNY+   QKL IFFEQL+VD+ L
Sbjct: 8  KILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

[Close]
BLAST of MC11g1222 vs. ExPASy TrEMBL
Match: A0A5A7U1X6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001540 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.65e-08
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 1  KVLPYLSKFDPLDGTNYKMLIQKLFIFFEQLKVDHAL 37
          K+LP LSK +PLDGTNY+   QKL IFFEQL+VD+ L
Sbjct: 8  KILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVL 44

The following BLAST results are available for this feature:
BLAST of MC11g1222 vs.
Match NameE-valueIdentityDescription
BLAST of MC11g1222 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK04337.13.72e-0867.57ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0044882.14.39e-0867.57ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0031694.14.39e-0867.57ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0067000.16.68e-0867.57ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYJ96809.1 ty1-cop... [more]
KAA0049792.17.54e-0867.57ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MC11g1222 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BXT21.80e-0867.57Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SKK32.13e-0867.57Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7TNG22.13e-0867.57Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7VIG33.23e-0867.57Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7U1X63.65e-0867.57Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of MC11g1222 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g1222.1MC11g1222.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding