MC11g1210 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1210
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 11892071 .. 11892163 (+)
RNA-Seq Expression	MC11g1210
Synteny	MC11g1210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCTTGGGGTGGGGTCCTTGAAGCAAAGAAATGTGGCCCTTCTCCTCAAATGTCAATGGAGATTTATGCAAAAAGAGTTCACCCTTTGGAGG

mRNA sequence

GGCCTTGGGGTGGGGTCCTTGAAGCAAAGAAATGTGGCCCTTCTCCTCAAATGTCAATGGAGATTTATGCAAAAAGAGTTCACCCTTTGGAGG

Coding sequence (CDS)

GGCCTTGGGGTGGGGTCCTTGAAGCAAAGAAATGTGGCCCTTCTCCTCAAATGTCAATGGAGATTTATGCAAAAAGAGTTCACCCTTTGGAGG

Protein sequence

GLGVGSLKQRNVALLLKCQWRFMQKEFTLWR

Homology

[Close]

BLAST of MC11g1210 vs. ExPASy TrEMBL
Match: A0A6L2MDV8 (Putative Gag-polypeptide of LTR copia-type OS=Tanacetum cinerariifolium OX=118510 GN=Tci_042920 PE=4 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.35e-04
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 0


Query: 1    GLGVGSLKQRNVALLLKCQWRFMQKEFTLWR 31
            GLGVGS+K +N+ALL K +W F  K   LWR
Sbjct: 974  GLGVGSIKSKNIALLWKWRWHFFNKNDALWR 1004

The following BLAST results are available for this feature:

BLAST of MC11g1210 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1210 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6L2MDV8	9.35e-04	58.06	Putative Gag-polypeptide of LTR copia-type OS=Tanacetum cinerariifolium OX=11851...	[more]

BLAST of MC11g1210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	TIGRFAM	TIGR04537	TIGR04537	coord: 1..8 e-value: 0.039 score: 12.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1210.1	MC11g1210.1	mRNA