MC11g1208 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g1208
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description40S ribosomal protein S18
LocationMC11: 11847873 .. 11850076 (-)
RNA-Seq ExpressionMC11g1208
SyntenyMC11g1208
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCAAAATAAAAACTTATCTTCGAATTTAGGGACATAATATTTTGTTTTTACTGACAAAAAGAAAAATGGTAATTTTGTTTTGAATATAATCGAAATTACGAGAATTTAGCAAGGGTATATTTGGTCAATCTGGTCGAGGCGGAACCCTAGAGGGCTTTAAAGGCAAAATATAAAATCCTCTCCCAGTCTCCACTCGAAGATCTCCCCTGATTTTTTTTCCCTGCCATTTGCTGCCTGCGCGAATTCTACGAAGTCCTTCCATCTTCATCCGCCATGGTAACTGCAGTTTCTTCTTTGTTGTTTCCGCTTGTTCTTCTTCTGCGTTGTTCTTGAATATACCAAATTATTCGTCAGGGTTTTGTATTTTCCCCAAAATGGTTGATTGTGTTTGTTTCTCTGGTTCTTTATCTAGTCGCTGGTAGCGAACGAGGAATTTCAGCACATTCTGCGTGTGCTGAACACGAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTTACTTCAATCAAAGGTATTGGAAGGCGTTTCGCTAATATCGTTTGCAAGAAGGCCGATGTCGACATGAACAAGAGGTATTTTATGCCCTTCTTTTCCATTTGTCCTGTATGTACTTCCATAGAAAGATTCGAGAATTATTGATGTTAAAAAGGACGCGTTCTAGTTCTACTTTGGTTGATTCTTATGTCGGTAATGATGTGGGCTGCTAGTCACGTTGGTCTGTTCCTTTTTCCGCATTAAAATGGATGATATTTTGGCTCTGTGTTGTTGGTTGTTACTAATTATATGTGCAGATAAGTAAGCTTCAAGTTTTACATAAAAAACTCAAGTTCTGAGATATTTGGGAAACAATAAGTTTAGTTTATTAGGGGTATGGCTATTGATTAAATCTTTGAAAGATATGGGATCTTTGAAGGAGTTGATTGTTGTTGGAACAATCATACTGCCGACATACGCATGATGATATTCTTCTGAATGATGAGGTCAGGCACTACATGACAAGATATGAGATGATGTATGACAAAACATAGCATCATGTAAATAGGGATATGTGATAGGTTAATTGTTATATGATTTAGGATTTTTAAAGAAGTTGGTTTCTTGGTTCATGTTTGCAGCTGGAATCTGAAAATGTGATGTAGGATTATGTTGGAAAACAAGAAAAAGCCAAACAAAATGTGGAGTAGAGGACTTCTAATCCACGAGCCTTCAATTAGAGTAATATTTACCAGGCAAGGATTTCAAAATATTAGAAAACTTTTCTGACAACCAGGTCTAGCTAAGGAAAAAAGAAAGACTACAATTCTCATTTGAGTTATTTGAGAATAAGTACGAACTGCAAGGAGATTCTTGGTTACTGGAATTATCTGCTGCATCTTCTTTTTTCCCATTGGATATGGCTTGACGCCATATGTTCCTCGTGCTTATTTGGTTTGATGTATACAGATGGCTGCAATTTTATTTTTTCCCTTTGATTATTTAAACTGACAATTCCTTCTGTGCTAAAATTAACTTATTTTTCTTCGGTATAAGTGATGAACAGCTGCTCAAGTGTAGTTGGTATTTGGAATATCTCGTCAGAAGTAAGGCAGGAGCAATTAACTTATATTTGTAGCTTGCTTCAGTAGTTACAATAGTTCATTGTTGGTGTTTTTATTAGTGTTTTACTTGATTTAGATGGAATAAAATACTTGTATTCCAATAATATATCTCAAGTGAGAAATACACAACCTTCTTATATAGGAGAAAGGCACAATACATAAAAGGAATGTAAATAAGAATTTAATATTTACAACTAATTACAACTAATATCCACAAATAAACCAACAGTTTTAAACTCAGTAAATGTTTATATTTATTCTTTTGTTGTATGTTTAATGACCATAAATGAATTTTCTTTTGAATTATTGTTCCCTTTATAACCCTAGAGGATGTTACAATTTAGAAGAAAGGAAAAACTGAAGGTGGATTATCAAATTTACACCTTCGTTCTCATTTGTTGTTGTTACTGCCAGGGCTGGTGAATTGACTGCTGCTGAGTTGGACAATCTCATGGTGGTTGTTGCCAATCCACGTCAATTTAAAATTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGACGGGAAATATTCTCAAGTGGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAACGGTTGAAGAAGATCAGG

mRNA sequence

ATCAAAATAAAAACTTATCTTCGAATTTAGGGACATAATATTTTGTTTTTACTGACAAAAAGAAAAATGGTAATTTTGTTTTGAATATAATCGAAATTACGAGAATTTAGCAAGGGTATATTTGGTCAATCTGGTCGAGGCGGAACCCTAGAGGGCTTTAAAGGCAAAATATAAAATCCTCTCCCAGTCTCCACTCGAAGATCTCCCCTGATTTTTTTTCCCTGCCATTTGCTGCCTGCGCGAATTCTACGAAGTCCTTCCATCTTCATCCGCCATGTCGCTGGTAGCGAACGAGGAATTTCAGCACATTCTGCGTGTGCTGAACACGAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTTACTTCAATCAAAGGTATTGGAAGGCGTTTCGCTAATATCGTTTGCAAGAAGGCCGATGTCGACATGAACAAGAGGGCTGGTGAATTGACTGCTGCTGAGTTGGACAATCTCATGGTGGTTGTTGCCAATCCACGTCAATTTAAAATTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGACGGGAAATATTCTCAAGTGGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAACGGTTGAAGAAGATCAGG

Coding sequence (CDS)

ATGTCGCTGGTAGCGAACGAGGAATTTCAGCACATTCTGCGTGTGCTGAACACGAACGTGGATGGGAAGCAGAAGATTATGTTTGCTCTTACTTCAATCAAAGGTATTGGAAGGCGTTTCGCTAATATCGTTTGCAAGAAGGCCGATGTCGACATGAACAAGAGGGCTGGTGAATTGACTGCTGCTGAGTTGGACAATCTCATGGTGGTTGTTGCCAATCCACGTCAATTTAAAATTCCTGACTGGTTTTTGAATCGGCAAAAGGACTACAAGGACGGGAAATATTCTCAAGTGGTTTCAAATGCATTGGACATGAAGTTGAGAGATGATTTGGAACGGTTGAAGAAGATCAGG

Protein sequence

MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELTAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Homology
[Close]
BLAST of MC11g1208 vs. ExPASy Swiss-Prot
Match: P34788 (40S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 5.5e-59
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 119
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. ExPASy Swiss-Prot
Match: Q8ISP0 (40S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 3.7e-47
Identity = 87/118 (73.73%), Postives = 109/118 (92.37%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLV  E+FQHILRV+NTN+DG++KIMFALTSIKG+GRR++NIVCKKAD+D++KRAGEL+
Sbjct: 1   MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 119
             E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR
Sbjct: 61  DEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. ExPASy Swiss-Prot
Match: Q8IT98 (40S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.8e-46
Identity = 85/118 (72.03%), Postives = 109/118 (92.37%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           M+L+  E+FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR+AN+VCKKADVD+ KRAGEL+
Sbjct: 1   MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 119
             E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR
Sbjct: 61  EDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. ExPASy Swiss-Prot
Match: Q8JGS9 (40S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 7.7e-45
Identity = 83/118 (70.34%), Postives = 106/118 (89.83%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLV  E+FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D+NKRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 119
             E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. ExPASy Swiss-Prot
Match: Q90YQ5 (40S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.9e-44
Identity = 82/118 (69.49%), Postives = 106/118 (89.83%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLV  E+FQHILRVLNTN+DG++KI FA+T+IKG+GRR+A++V +KAD+D++KRAGELT
Sbjct: 1   MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 119
             E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR
Sbjct: 61  EDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. NCBI nr
Match: XP_022133825.1 (40S ribosomal protein S18 [Momordica charantia] >XP_022143681.1 40S ribosomal protein S18 [Momordica charantia])

HSP 1 Score: 235 bits (599), Expect = 2.19e-77
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. NCBI nr
Match: XP_021689481.1 (40S ribosomal protein S18-like [Hevea brasiliensis])

HSP 1 Score: 233 bits (595), Expect = 2.88e-77
Identity = 116/118 (98.31%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. NCBI nr
Match: XP_012073942.1 (40S ribosomal protein S18 [Jatropha curcas] >KDP36554.1 hypothetical protein JCGZ_08321 [Jatropha curcas] >GAV72947.1 Ribosomal_S13 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 234 bits (598), Expect = 3.11e-77
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. NCBI nr
Match: XP_004139687.1 (40S ribosomal protein S18 [Cucumis sativus] >XP_004140957.2 40S ribosomal protein S18 [Cucumis sativus] >XP_008456747.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_008461916.1 PREDICTED: 40S ribosomal protein S18 [Cucumis melo] >XP_038884290.1 40S ribosomal protein S18 [Benincasa hispida] >XP_038896640.1 40S ribosomal protein S18 [Benincasa hispida] >KGN44457.1 hypothetical protein Csa_016630 [Cucumis sativus])

HSP 1 Score: 234 bits (596), Expect = 6.27e-77
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. NCBI nr
Match: XP_002524340.1 (40S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal protein S18 [Manihot esculenta] >XP_021689482.1 40S ribosomal protein S18 [Hevea brasiliensis] >XP_031251561.1 40S ribosomal protein S18-like [Pistacia vera] >XP_031258282.1 40S ribosomal protein S18-like [Pistacia vera] >EEF38080.1 40S ribosomal protein S18, putative [Ricinus communis] >OAY58510.1 hypothetical protein MANES_02G183300v8 [Manihot esculenta])

HSP 1 Score: 233 bits (595), Expect = 8.91e-77
Identity = 116/118 (98.31%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. ExPASy TrEMBL
Match: A0A6J1BWC2 (40S ribosomal protein S18 OS=Momordica charantia OX=3673 GN=LOC111006290 PE=3 SV=1)

HSP 1 Score: 235 bits (599), Expect = 1.06e-77
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. ExPASy TrEMBL
Match: A0A067KXH7 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08321 PE=3 SV=1)

HSP 1 Score: 234 bits (598), Expect = 1.51e-77
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. ExPASy TrEMBL
Match: A0A1Q3BYA9 (Ribosomal_S13 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_16435 PE=3 SV=1)

HSP 1 Score: 234 bits (598), Expect = 1.51e-77
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
           AAELDNLMV+VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAELDNLMVIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. ExPASy TrEMBL
Match: A0A0A0K7Z7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G055370 PE=3 SV=1)

HSP 1 Score: 234 bits (596), Expect = 3.04e-77
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. ExPASy TrEMBL
Match: A0A1S3CH47 (40S ribosomal protein S18 OS=Cucumis melo OX=3656 GN=LOC103500403 PE=3 SV=1)

HSP 1 Score: 234 bits (596), Expect = 3.04e-77
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT
Sbjct: 1   MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118
           AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. TAIR 10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 228.0 bits (580), Expect = 3.9e-60
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 119
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. TAIR 10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family )

HSP 1 Score: 228.0 bits (580), Expect = 3.9e-60
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 119
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

[Close]
BLAST of MC11g1208 vs. TAIR 10
Match: AT4G09800.1 (S18 ribosomal protein )

HSP 1 Score: 228.0 bits (580), Expect = 3.9e-60
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELT 60
           MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRR ANIVCKKADVDMNKRAGEL+
Sbjct: 1   MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60

Query: 61  AAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 119
           AAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR
Sbjct: 61  AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIR 118

The following BLAST results are available for this feature:
BLAST of MC11g1208 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P347885.5e-5995.7640S ribosomal protein S18 OS=Arabidopsis thaliana OX=3702 GN=RPS18A PE=1 SV=1[more]
Q8ISP03.7e-4773.7340S ribosomal protein S18 OS=Branchiostoma belcheri OX=7741 GN=RPS18 PE=2 SV=1[more]
Q8IT981.8e-4672.0340S ribosomal protein S18 OS=Argopecten irradians OX=31199 GN=RPS18 PE=2 SV=1[more]
Q8JGS97.7e-4570.3440S ribosomal protein S18 OS=Danio rerio OX=7955 GN=rps18 PE=2 SV=1[more]
Q90YQ52.9e-4469.4940S ribosomal protein S18 OS=Ictalurus punctatus OX=7998 GN=rps18 PE=2 SV=1[more]
BLAST of MC11g1208 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022133825.12.19e-77100.0040S ribosomal protein S18 [Momordica charantia] >XP_022143681.1 40S ribosomal pr... [more]
XP_021689481.12.88e-7798.3140S ribosomal protein S18-like [Hevea brasiliensis][more]
XP_012073942.13.11e-7799.1540S ribosomal protein S18 [Jatropha curcas] >KDP36554.1 hypothetical protein JCG... [more]
XP_004139687.16.27e-7799.1540S ribosomal protein S18 [Cucumis sativus] >XP_004140957.2 40S ribosomal protei... [more]
XP_002524340.18.91e-7798.3140S ribosomal protein S18 [Ricinus communis] >XP_021602211.1 40S ribosomal prote... [more]
BLAST of MC11g1208 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BWC21.06e-77100.0040S ribosomal protein S18 OS=Momordica charantia OX=3673 GN=LOC111006290 PE=3 SV... [more]
A0A067KXH71.51e-7799.15Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_08321 PE=3 SV=1[more]
A0A1Q3BYA91.51e-7799.15Ribosomal_S13 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CF... [more]
A0A0A0K7Z73.04e-7799.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G055370 PE=3 SV=1[more]
A0A1S3CH473.04e-7799.1540S ribosomal protein S18 OS=Cucumis melo OX=3656 GN=LOC103500403 PE=3 SV=1[more]
BLAST of MC11g1208 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G22780.13.9e-6095.76Ribosomal protein S13/S18 family [more]
AT1G34030.13.9e-6095.76Ribosomal protein S13/S18 family [more]
AT4G09800.13.9e-6095.76S18 ribosomal protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13PIRSFPIRSF002134RPS13p_RPS13a_RPS18e_RPS13ocoord: 4..118
e-value: 1.8E-22
score: 77.6
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 14..118
e-value: 4.1E-39
score: 133.9
IPR001892Ribosomal protein S13PROSITEPS50159RIBOSOMAL_S13_2coord: 15..118
score: 21.054573
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.1030s ribosomal protein s13, domain 2coord: 92..118
e-value: 1.8E-8
score: 36.0
NoneNo IPR availableGENE3D1.10.8.50coord: 1..80
e-value: 4.4E-36
score: 125.0
NoneNo IPR availablePANTHERPTHR10871:SF340S RIBOSOMAL PROTEIN S18-RELATEDcoord: 1..118
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 1..118
IPR010979Ribosomal protein S13-like, H2THSUPERFAMILY46946S13-like H2TH domaincoord: 13..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g1208.1MC11g1208.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005829 cytosol
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding