MC11g0937 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g0937
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description60S ribosomal protein L2
LocationMC11: 7969439 .. 7969627 (-)
RNA-Seq ExpressionMC11g0937
SyntenyMC11g0937
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CACACCTCGGTCACCCACATGGTGCTCCACATTACAAACCACAGCACCTTCAGGGATGGCTCTGATGGGGAGCACATTACCGACAACAAGATTGGCCTTCTTCCCGCAGTAGACGAACTGGCCGGTGTACATACCCTCGGCGGCGATGAAGAGCTCCTTCTGGTGCTTGTAGCGGAAGGGGTGGCGGAA

mRNA sequence

CACACCTCGGTCACCCACATGGTGCTCCACATTACAAACCACAGCACCTTCAGGGATGGCTCTGATGGGGAGCACATTACCGACAACAAGATTGGCCTTCTTCCCGCAGTAGACGAACTGGCCGGTGTACATACCCTCGGCGGCGATGAAGAGCTCCTTCTGGTGCTTGTAGCGGAAGGGGTGGCGGAA

Coding sequence (CDS)

CACACCTCGGTCACCCACATGGTGCTCCACATTACAAACCACAGCACCTTCAGGGATGGCTCTGATGGGGAGCACATTACCGACAACAAGATTGGCCTTCTTCCCGCAGTAGACGAACTGGCCGGTGTACATACCCTCGGCGGCGATGAAGAGCTCCTTCTGGTGCTTGTAGCGGAAGGGGTGGCGGAA

Protein sequence

HTSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGVAE
Homology
[Close]
BLAST of MC11g0937 vs. NCBI nr
Match: CAN78243.1 (hypothetical protein VITISV_030602 [Vitis vinifera])

HSP 1 Score: 80.9 bits (198), Expect = 4.45e-17
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1  HTSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEG 60
          HT+VTHMVL++ ++ T  DGS  ++I +N+IGLL  +DEL GVH LGGDE+L L+LV EG
Sbjct: 6  HTTVTHMVLNVAHNGTLGDGSKRQYIANNEIGLLATIDELVGVHALGGDEQLFLMLVPEG 65

Query: 61 VAE 63
          VAE
Sbjct: 66 VAE 68

[Close]
BLAST of MC11g0937 vs. NCBI nr
Match: XP_034701010.1 (uncharacterized protein LOC117926028 [Vitis riparia])

HSP 1 Score: 76.3 bits (186), Expect = 9.08e-16
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 1  HTSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEG 60
          HT+VTHMVL++ ++    DGS  ++I +N+IGLL  VDELAGVH LG D++L L+LV EG
Sbjct: 6  HTTVTHMVLNVAHNDILGDGSKRQNIANNEIGLLATVDELAGVHALGSDKQLFLMLVPEG 65

Query: 61 VAE 63
          VAE
Sbjct: 66 VAE 68

[Close]
BLAST of MC11g0937 vs. NCBI nr
Match: GER39561.1 (60S ribosomal protein L2 [Striga asiatica])

HSP 1 Score: 75.9 bits (185), Expect = 2.86e-15
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 3  SVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGVA 62
          SVTH++LH+ ++ T RD S+ E I D+KIGLL AVDELAG+H LGG E+LLL+L  E VA
Sbjct: 34 SVTHVMLHVADNGTLRDRSEWEDIADHKIGLLAAVDELAGIHALGGHEKLLLMLEPEWVA 93

[Close]
BLAST of MC11g0937 vs. NCBI nr
Match: RVW26796.1 (hypothetical protein CK203_099716 [Vitis vinifera])

HSP 1 Score: 74.7 bits (182), Expect = 1.11e-13
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 3  SVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGVA 62
          +VTHMVL++ ++ T  DGS  ++I +N+IGLL  VDELAGVH LGGDE+L L+LV E VA
Sbjct: 33 AVTHMVLNVAHNGTLGDGSKRQNIANNEIGLLATVDELAGVHALGGDEQLFLMLVPERVA 92

[Close]
BLAST of MC11g0937 vs. NCBI nr
Match: KAF4382597.1 (hypothetical protein F8388_015425 [Cannabis sativa])

HSP 1 Score: 70.1 bits (170), Expect = 2.05e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 2  TSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGV 61
          T+VT +VL + N+ TFR+ S+ ++IT N+IGLL  VDEL  V TLGGDE+LLLVLV E V
Sbjct: 16 TTVTDVVLDVANNGTFRERSERKNITHNEIGLLSTVDELTRVQTLGGDEKLLLVLVPERV 75

Query: 62 AE 63
           E
Sbjct: 76 TE 77

[Close]
BLAST of MC11g0937 vs. ExPASy TrEMBL
Match: A5AS87 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030602 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.15e-17
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1  HTSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEG 60
          HT+VTHMVL++ ++ T  DGS  ++I +N+IGLL  +DEL GVH LGGDE+L L+LV EG
Sbjct: 6  HTTVTHMVLNVAHNGTLGDGSKRQYIANNEIGLLATIDELVGVHALGGDEQLFLMLVPEG 65

Query: 61 VAE 63
          VAE
Sbjct: 66 VAE 68

[Close]
BLAST of MC11g0937 vs. ExPASy TrEMBL
Match: A0A5A7Q6A2 (60S ribosomal protein L2 OS=Striga asiatica OX=4170 GN=STAS_16180 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.38e-15
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 3  SVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGVA 62
          SVTH++LH+ ++ T RD S+ E I D+KIGLL AVDELAG+H LGG E+LLL+L  E VA
Sbjct: 34 SVTHVMLHVADNGTLRDRSEWEDIADHKIGLLAAVDELAGIHALGGHEKLLLMLEPEWVA 93

[Close]
BLAST of MC11g0937 vs. ExPASy TrEMBL
Match: A0A438CUB9 (Chromo domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_099716 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.37e-14
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 3  SVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGVA 62
          +VTHMVL++ ++ T  DGS  ++I +N+IGLL  VDELAGVH LGGDE+L L+LV E VA
Sbjct: 33 AVTHMVLNVAHNGTLGDGSKRQNIANNEIGLLATVDELAGVHALGGDEQLFLMLVPERVA 92

[Close]
BLAST of MC11g0937 vs. ExPASy TrEMBL
Match: A0A7J6HGG0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018542 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.93e-14
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 2  TSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGV 61
          T+VT +VL + N+ TFR+ S+ ++IT N+IGLL  VDEL  V TLGGDE+LLLVLV E V
Sbjct: 16 TTVTDVVLDVANNGTFRERSERKNITHNEIGLLSTVDELTRVQTLGGDEKLLLVLVPERV 75

Query: 62 AE 63
           E
Sbjct: 76 TE 77

[Close]
BLAST of MC11g0937 vs. ExPASy TrEMBL
Match: A0A7J6GI91 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_015425 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.93e-14
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 2  TSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGV 61
          T+VT +VL + N+ TFR+ S+ ++IT N+IGLL  VDEL  V TLGGDE+LLLVLV E V
Sbjct: 16 TTVTDVVLDVANNGTFRERSERKNITHNEIGLLSTVDELTRVQTLGGDEKLLLVLVPERV 75

Query: 62 AE 63
           E
Sbjct: 76 TE 77

The following BLAST results are available for this feature:
BLAST of MC11g0937 vs.
Match NameE-valueIdentityDescription
BLAST of MC11g0937 vs. NCBI nr
Match NameE-valueIdentityDescription
CAN78243.14.45e-1760.32hypothetical protein VITISV_030602 [Vitis vinifera][more]
XP_034701010.19.08e-1658.73uncharacterized protein LOC117926028 [Vitis riparia][more]
GER39561.12.86e-1562.3060S ribosomal protein L2 [Striga asiatica][more]
RVW26796.11.11e-1360.66hypothetical protein CK203_099716 [Vitis vinifera][more]
KAF4382597.12.05e-1359.68hypothetical protein F8388_015425 [Cannabis sativa][more]
BLAST of MC11g0937 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A5AS872.15e-1760.32Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030602 PE=4 SV=1[more]
A0A5A7Q6A21.38e-1562.3060S ribosomal protein L2 OS=Striga asiatica OX=4170 GN=STAS_16180 PE=4 SV=1[more]
A0A438CUB95.37e-1460.66Chromo domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_099716 PE=4... [more]
A0A7J6HGG09.93e-1459.68Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018542 PE=4 SV=1[more]
A0A7J6GI919.93e-1459.68Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_015425 PE=4 SV=1[more]
BLAST of MC11g0937 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g0937.1MC11g0937.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005840 ribosome
molecular_function GO:0008236 serine-type peptidase activity