MC11g0885 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g0885
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionzf-RVT domain-containing protein
LocationMC11: 7508260 .. 7508575 (-)
RNA-Seq ExpressionMC11g0885
SyntenyMC11g0885
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGGATGTTCTACGTAAGAAAAAACCCTCTTCTTATATTATGCCATCAGTATGTTATTTGTGTTTTGCAGCTTCAGAACAAGACAATCATGTATTATTCAGTTGCCCAATGCTTTTTGTCTTGCTGGAATCTTCTCTTCTGGATCTTTAATTTACAATGGGTTATCTCTCAAGATTCTCATAACAATGCTCTCCAACTTACTGGAGGTCTTTCTTTGGCTCCAAGGCCAAATTTATTGTGCATCAATGCGGTTAGAGCTATTATTTCAGAACTTTGGTTAACACGGAATCAAAGAGCTTTTAAAGATACTCAGAGG

mRNA sequence

TCGGATGTTCTACGTAAGAAAAAACCCTCTTCTTATATTATGCCATCAGTATGTTATTTGTGTTTTGCAGCTTCAGAACAAGACAATCATGTATTATTCAGTTGCCCATTTTTGTCTTGCTGGAATCTTCTCTTCTGGATCTTTAATTTACAATGGGTTATCTCTCAAGATTCTCATAACAATGCTCTCCAACTTACTGGAGGTCTTTCTTTGGCTCCAAGGCCAAATTTATTGTGCATCAATGCGGTTAGAGCTATTATTTCAGAACTTTGGTTAACACGGAATCAAAGAGCTTTTAAAGATACTCAGAGG

Coding sequence (CDS)

TCGGATGTTCTACGTAAGAAAAAACCCTCTTCTTATATTATGCCATCAGTATGTTATTTGTGTTTTGCAGCTTCAGAACAAGACAATCATGTATTATTCAGTTGCCCATTTTTGTCTTGCTGGAATCTTCTCTTCTGGATCTTTAATTTACAATGGGTTATCTCTCAAGATTCTCATAACAATGCTCTCCAACTTACTGGAGGTCTTTCTTTGGCTCCAAGGCCAAATTTATTGTGCATCAATGCGGTTAGAGCTATTATTTCAGAACTTTGGTTAACACGGAATCAAAGAGCTTTTAAAGATACTCAGAGG

Protein sequence

SDVLRKKKPSSYIMPSVCYLCFAASEQDNHVLFSCPFLSCWNLLFWIFNLQWVISQDSHNNALQLTGGLSLAPRPNLLCINAVRAIISELWLTRNQRAFKDTQR
Homology
[Close]
BLAST of MC11g0885 vs. NCBI nr
Match: XP_022153214.1 (uncharacterized protein LOC111020765 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 9.35e-19
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 1   SDVLRKKKPSSYIMPSVCYLCFAASEQDNHVLFSCPFLS-CWNLLFWIFNLQWVISQDSH 60
           +D+++KK PS  ++PS C LC  + E  +H+ F C F S CWNLLF  FN+ W     + 
Sbjct: 56  ADIIQKKSPSDALLPSFCCLCTKSGEDHDHLFFHCYFASKCWNLLFHQFNVDWCFDLKAG 115

Query: 61  NNALQLTGGLS-LAPRPNLLCINAVRAIISELWLTRNQRAFKDTQR 104
           +N  QL  G   L+     L +N V+A++SELW  RN R F++ +R
Sbjct: 116 DNVYQLLHGPPHLSSSVRFLWLNVVKALLSELWFERNSRLFEEKRR 161

[Close]
BLAST of MC11g0885 vs. NCBI nr
Match: XP_038903695.1 (uncharacterized protein LOC120090219 [Benincasa hispida])

HSP 1 Score: 80.5 bits (197), Expect = 2.44e-15
Identity = 40/100 (40.00%), Postives = 58/100 (58.00%), Query Frame = 0 

Query: 1   SDVLRKKKPSSYIMPSVCYLCFAASEQDNHVLFSCPFLS-CWNLLFWIFNLQWVISQDSH 60
           ++VL+KK+P+  + P+VC  C   SE   H+ F+CP+ S CWN L   FNL   +  D  
Sbjct: 171 AEVLQKKQPTPSLSPTVCPFCLHHSEVSLHLFFTCPYSSWCWNKLLCFFNLPLTLCNDFK 230

Query: 61  NNALQLTGGLSLAPRPNLLCINAVRAIISELWLTRNQRAF 99
           +N  QL    +      LL  NAV+A++++LW  RNQR F
Sbjct: 231 SNVFQLLARPTSHKSTRLLWCNAVKALLADLWFERNQRIF 270

[Close]
BLAST of MC11g0885 vs. NCBI nr
Match: TYK21876.1 (hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 5.76e-12
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 0 

Query: 1   SDVLRKKKPSSYIMPSVCYLCFAASEQDNHVLFSCPFLSC-WNLLFWIFNLQWVISQDSH 60
           S++L+KK P + + PS+C LC  AS+   H+   CP  S  W  +F +FNL W       
Sbjct: 241 SEILQKKSPIN-VSPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLS 300

Query: 61  NNALQLTGGLSLAPRPNLLCINAVRAIISELWLTRNQRAFKDTQR 104
            + +QL  G +L   P ++     +A++ E+W+ RNQR F D  R
Sbjct: 301 ASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFHDKAR 344

[Close]
BLAST of MC11g0885 vs. NCBI nr
Match: KAA0035739.1 (hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.34e-12
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 0 

Query: 1   SDVLRKKKPSSYIMPSVCYLCFAASEQDNHVLFSCPFLSC-WNLLFWIFNLQWVISQDSH 60
           S++L+KK P + + PS+C LC  AS+   H+   CP  S  W  +F +FNL W       
Sbjct: 241 SEILQKKSPIN-VSPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLS 300

Query: 61  NNALQLTGGLSLAPRPNLLCINAVRAIISELWLTRNQRAFKDTQR 104
            + +QL  G +L   P ++     +A++ E+W+ RNQR F D  R
Sbjct: 301 ASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFHDKAR 344

[Close]
BLAST of MC11g0885 vs. NCBI nr
Match: KAA0062564.1 (GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 5.32e-10
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 1   SDVLRKKKPSSYIMPSVCYLCFAASEQDNHVLFSCPF-LSCWNLLFWIFNLQWVISQDSH 60
           S V++++  +S +MPS C LC    E D   LF+CP+ + CW  L  +F + W      +
Sbjct: 556 SLVMQRELLNSCLMPSACSLCLEEGE-DLQPLFTCPYSVKCWENLLSLFGVDWAFDGSFN 615

Query: 61  NNALQLTGGLSLAPRPNLLCINAVRAIISELWLTRNQRAFK 100
           +N  Q+  G SL   P L+  N  +A++S++W   NQR F+
Sbjct: 616 SNIKQILLGSSLKEGPRLIWGNMSKALLSDIWFECNQRIFR 655

[Close]
BLAST of MC11g0885 vs. ExPASy TrEMBL
Match: A0A6J1DIE2 (uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020765 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.53e-19
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 1   SDVLRKKKPSSYIMPSVCYLCFAASEQDNHVLFSCPFLS-CWNLLFWIFNLQWVISQDSH 60
           +D+++KK PS  ++PS C LC  + E  +H+ F C F S CWNLLF  FN+ W     + 
Sbjct: 56  ADIIQKKSPSDALLPSFCCLCTKSGEDHDHLFFHCYFASKCWNLLFHQFNVDWCFDLKAG 115

Query: 61  NNALQLTGGLS-LAPRPNLLCINAVRAIISELWLTRNQRAFKDTQR 104
           +N  QL  G   L+     L +N V+A++SELW  RN R F++ +R
Sbjct: 116 DNVYQLLHGPPHLSSSVRFLWLNVVKALLSELWFERNSRLFEEKRR 161

[Close]
BLAST of MC11g0885 vs. ExPASy TrEMBL
Match: A0A5D3DE60 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.79e-12
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 0 

Query: 1   SDVLRKKKPSSYIMPSVCYLCFAASEQDNHVLFSCPFLSC-WNLLFWIFNLQWVISQDSH 60
           S++L+KK P + + PS+C LC  AS+   H+   CP  S  W  +F +FNL W       
Sbjct: 241 SEILQKKSPIN-VSPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLS 300

Query: 61  NNALQLTGGLSLAPRPNLLCINAVRAIISELWLTRNQRAFKDTQR 104
            + +QL  G +L   P ++     +A++ E+W+ RNQR F D  R
Sbjct: 301 ASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFHDKAR 344

[Close]
BLAST of MC11g0885 vs. ExPASy TrEMBL
Match: A0A5A7T2Y0 (zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00100 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.07e-12
Identity = 37/105 (35.24%), Postives = 57/105 (54.29%), Query Frame = 0 

Query: 1   SDVLRKKKPSSYIMPSVCYLCFAASEQDNHVLFSCPFLSC-WNLLFWIFNLQWVISQDSH 60
           S++L+KK P + + PS+C LC  AS+   H+   CP  S  W  +F +FNL W       
Sbjct: 241 SEILQKKSPIN-VSPSICPLCLKASKNLPHIFLYCPVSSFGWERIFSLFNLVWNFDSSLS 300

Query: 61  NNALQLTGGLSLAPRPNLLCINAVRAIISELWLTRNQRAFKDTQR 104
            + +QL  G +L   P ++     +A++ E+W+ RNQR F D  R
Sbjct: 301 ASVIQLLSGSNLPKTPRIIWEILSKALLIEIWIERNQRIFHDKAR 344

[Close]
BLAST of MC11g0885 vs. ExPASy TrEMBL
Match: A0A5A7V5N8 (GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00520 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.58e-10
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 1   SDVLRKKKPSSYIMPSVCYLCFAASEQDNHVLFSCPF-LSCWNLLFWIFNLQWVISQDSH 60
           S V++++  +S +MPS C LC    E D   LF+CP+ + CW  L  +F + W      +
Sbjct: 556 SLVMQRELLNSCLMPSACSLCLEEGE-DLQPLFTCPYSVKCWENLLSLFGVDWAFDGSFN 615

Query: 61  NNALQLTGGLSLAPRPNLLCINAVRAIISELWLTRNQRAFK 100
           +N  Q+  G SL   P L+  N  +A++S++W   NQR F+
Sbjct: 616 SNIKQILLGSSLKEGPRLIWGNMSKALLSDIWFECNQRIFR 655

[Close]
BLAST of MC11g0885 vs. ExPASy TrEMBL
Match: A0A5D3BY88 (DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00130 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.46e-07
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 0 

Query: 2   DVLRKKKPSSYIMPSVCYLCFAASEQDNHVLFSCPFLS-CWNLLFWIFNLQWVISQDSHN 61
           ++++KK PS  + PSV  LC  A+E   H++  CP  S CWN  F IF++ WV      +
Sbjct: 34  EIIQKKSPSRCLQPSVRALCMNANESLLHLVLLCPHSSFCWNNFFSIFDIDWVFDASLSS 93

Query: 62  NAL-----QLTGGLSLAPRPNLLCINAV 83
             L     QL  GL L  +P L+ +N V
Sbjct: 94  LVLSSLVLQLLEGLPLPKKPRLIWLNFV 121

The following BLAST results are available for this feature:
BLAST of MC11g0885 vs.
Match NameE-valueIdentityDescription
BLAST of MC11g0885 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022153214.19.35e-1940.57uncharacterized protein LOC111020765 [Momordica charantia][more]
XP_038903695.12.44e-1540.00uncharacterized protein LOC120090219 [Benincasa hispida][more]
TYK21876.15.76e-1235.24hypothetical protein E5676_scaffold494G00090 [Cucumis melo var. makuwa][more]
KAA0035739.16.34e-1235.24hypothetical protein E6C27_scaffold403G00100 [Cucumis melo var. makuwa][more]
KAA0062564.15.32e-1034.65GPI-anchor transamidase isoform X1 [Cucumis melo var. makuwa][more]
BLAST of MC11g0885 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DIE24.53e-1940.57uncharacterized protein LOC111020765 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A5D3DE602.79e-1235.24zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7T2Y03.07e-1235.24zf-RVT domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27... [more]
A0A5A7V5N82.58e-1034.65GPI-anchor transamidase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A5D3BY881.46e-0737.50DNA-directed RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
BLAST of MC11g0885 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g0885.1MC11g0885.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044237 cellular metabolic process
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0016787 hydrolase activity