MC11g0753 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0753
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosomal protein S12
Location	MC11: 6085545 .. 6085775 (+)
RNA-Seq Expression	MC11g0753
Synteny	MC11g0753

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAATAAGAGGATGTAGAGTGAAAGATTCGCCAAGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGAAGAAGAGGCATATCTAAATATGGTGCAGAAAAACCAAAATCGATA

mRNA sequence

CCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAATAAGAGGATGTAGAGTGAAAGATTCGCCAAGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGAAGAAGAGGCATATCTAAATATGGTGCAGAAAAACCAAAATCGATA

Coding sequence (CDS)

CCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGACATGATATATTTGCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTGTTAATAAGAGGATGTAGAGTGAAAGATTCGCCAAGTGTGAAATCCCATTGTATTCGAGGAGTCAAGGATTTGCTGGGAATTCCGGATCGAAGAAGAGGCATATCTAAATATGGTGCAGAAAAACCAAAATCGATA

Protein sequence

PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIPDRRRGISKYGAEKPKSI

Homology

[Close]

BLAST of MC11g0753 vs. ExPASy Swiss-Prot
Match: P68535 (Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-37
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRG RVKDSP VKSHCIRGVKDLLGIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIP 108

Query: 61  DRRRGISKYGAEKPKSI 78
           DRRRG SKYGAEKPKSI
Sbjct: 109 DRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. ExPASy Swiss-Prot
Match: P68536 (Ribosomal protein S12, mitochondrial OS=Petunia parodii OX=55890 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-37
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRG RVKDSP VKSHCIRGVKDLLGIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIP 108

Query: 61  DRRRGISKYGAEKPKSI 78
           DRRRG SKYGAEKPKSI
Sbjct: 109 DRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. ExPASy Swiss-Prot
Match: Q95869 (Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 9.5e-36
Identity = 72/77 (93.51%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHN QEHSMVLIRG RVKDSP VK HCIRGVKDLLGIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNSQEHSMVLIRGGRVKDSPGVKFHCIRGVKDLLGIP 108

Query: 61  DRRRGISKYGAEKPKSI 78
           DRRRG SKYGAEKPKSI
Sbjct: 109 DRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. ExPASy Swiss-Prot
Match: P27070 (Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.6e-35
Identity = 71/77 (92.21%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRL+NRHDIF HIPGEGHN QEHSMVLIRG RVKDSP VKSHCIRGVKDLLGIP
Sbjct: 49  PRKIAKVRLANRHDIFPHIPGEGHNSQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIP 108

Query: 61  DRRRGISKYGAEKPKSI 78
           DRRRG SKYGAEKPKSI
Sbjct: 109 DRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. ExPASy Swiss-Prot
Match: P50892 (Ribosomal protein S12, mitochondrial OS=Raphanus sativus OX=3726 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 4.0e-34
Identity = 69/77 (89.61%), Postives = 70/77 (90.91%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRG RVKDSP VKSHCIRGVKDL+GIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNSQEHSQVLIRGGRVKDSPGVKSHCIRGVKDLMGIP 108

Query: 61  DRRRGISKYGAEKPKSI 78
            RR G SKYGAEKPKSI
Sbjct: 109 GRRSGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. NCBI nr
Match: XP_022135469.1 (uncharacterized protein LOC111007417 [Momordica charantia])

HSP 1 Score: 158 bits (399), Expect = 1.21e-48
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
          PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSP VKSHCIRGVKDLLGIP
Sbjct: 2  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPXVKSHCIRGVKDLLGIP 61

Query: 61 DRRRGISKYGAEKPKSI 77
          DRRRG SKYGAEKPKSI
Sbjct: 62 DRRRGXSKYGAEKPKSI 78

[Close]

BLAST of MC11g0753 vs. NCBI nr
Match: QVJ97865.1 (ribosomal protein S12 [Apium graveolens] >QVJ97979.1 ribosomal protein S12 [Apium graveolens] >QVJ98123.1 ribosomal protein S12 [Apium graveolens] >QYA18044.1 ribosomal protein S12 [Apium graveolens])

HSP 1 Score: 153 bits (386), Expect = 4.89e-46
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRG RVKDSP VKSHCIRGVKDLLGIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIP 108

Query: 61  DRRRGISKYGAEKPKSI 77
           DRRRG SKYGAEKPKSI
Sbjct: 109 DRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. NCBI nr
Match: YP_004849331.1 (ribosomal protein S12 [Cucumis sativus] >ADZ10758.1 ribosomal protein S12 [Cucumis sativus])

HSP 1 Score: 153 bits (386), Expect = 4.89e-46
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRG RVKDSP VKSHCIRGVKDLLGIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIP 108

Query: 61  DRRRGISKYGAEKPKSI 77
           DRRRG SKYGAEKPKSI
Sbjct: 109 DRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. NCBI nr
Match: YP_009709935.1 (ribosomal protein S12 [Manihot esculenta] >YP_009913612.1 ribosomal protein S12 [Luffa acutangula] >QFO87087.1 ribosomal protein S12 [Manihot esculenta] >QLJ93025.1 ribosomal protein S12 [Luffa acutangula] >BAO50919.1 ribosomal protein S12 [Hevea brasiliensis])

HSP 1 Score: 153 bits (386), Expect = 4.89e-46
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRG RVKDSP VKSHCIRGVKDLLGIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIP 108

Query: 61  DRRRGISKYGAEKPKSI 77
           DRRRG SKYGAEKPKSI
Sbjct: 109 DRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. NCBI nr
Match: YP_009940638.1 (ribosomal protein S12 [Passiflora edulis] >QNZ92492.1 ribosomal protein S12 [Passiflora edulis])

HSP 1 Score: 153 bits (386), Expect = 4.89e-46
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRG RVKDSP VKSHCIRGVKDLLGIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIP 108

Query: 61  DRRRGISKYGAEKPKSI 77
           DRRRG SKYGAEKPKSI
Sbjct: 109 DRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. ExPASy TrEMBL
Match: A0A6J1C1I5 (uncharacterized protein LOC111007417 OS=Momordica charantia OX=3673 GN=LOC111007417 PE=3 SV=1)

HSP 1 Score: 158 bits (399), Expect = 5.86e-49
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
          PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSP VKSHCIRGVKDLLGIP
Sbjct: 2  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPXVKSHCIRGVKDLLGIP 61

Query: 61 DRRRGISKYGAEKPKSI 77
          DRRRG SKYGAEKPKSI
Sbjct: 62 DRRRGXSKYGAEKPKSI 78

[Close]

BLAST of MC11g0753 vs. ExPASy TrEMBL
Match: A0A7D6BYE6 (Ribosomal protein S12 OS=Luffa acutangula OX=56866 GN=rps12 PE=3 SV=1)

HSP 1 Score: 153 bits (386), Expect = 2.37e-46
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRG RVKDSP VKSHCIRGVKDLLGIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIP 108

Query: 61  DRRRGISKYGAEKPKSI 77
           DRRRG SKYGAEKPKSI
Sbjct: 109 DRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. ExPASy TrEMBL
Match: A0A7G8P5I5 (Ribosomal protein S12 OS=Oenanthe virgata OX=442483 GN=rps12 PE=3 SV=1)

HSP 1 Score: 153 bits (386), Expect = 2.37e-46
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRG RVKDSP VKSHCIRGVKDLLGIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIP 108

Query: 61  DRRRGISKYGAEKPKSI 77
           DRRRG SKYGAEKPKSI
Sbjct: 109 DRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. ExPASy TrEMBL
Match: G3EU39 (Ribosomal protein S12 OS=Cucumis melo subsp. melo OX=412675 GN=rps12 PE=3 SV=1)

HSP 1 Score: 153 bits (386), Expect = 2.37e-46
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRG RVKDSP VKSHCIRGVKDLLGIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIP 108

Query: 61  DRRRGISKYGAEKPKSI 77
           DRRRG SKYGAEKPKSI
Sbjct: 109 DRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. ExPASy TrEMBL
Match: G3EIY3 (Ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=rps12 PE=3 SV=1)

HSP 1 Score: 153 bits (386), Expect = 2.37e-46
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRG RVKDSP VKSHCIRGVKDLLGIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGVKSHCIRGVKDLLGIP 108

Query: 61  DRRRGISKYGAEKPKSI 77
           DRRRG SKYGAEKPKSI
Sbjct: 109 DRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 146.7 bits (369), Expect = 7.4e-36
Identity = 70/77 (90.91%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRG RVKDSP VKSHCIRGVKDL+GIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIP 108

Query: 61  DRRRGISKYGAEKPKSI 78
            RRRG SKYGAEKPKSI
Sbjct: 109 GRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 146.7 bits (369), Expect = 7.4e-36
Identity = 70/77 (90.91%), Postives = 71/77 (92.21%), Query Frame = 0


Query: 1   PRKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIP 60
           PRKIAKVRLSNRHDIFAHIPGEGHN QEHS VLIRG RVKDSP VKSHCIRGVKDL+GIP
Sbjct: 49  PRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIP 108

Query: 61  DRRRGISKYGAEKPKSI 78
            RRRG SKYGAEKPKSI
Sbjct: 109 GRRRGRSKYGAEKPKSI 125

[Close]

BLAST of MC11g0753 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-21
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 2   RKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIPD 61
           RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RG RVKD P V+ H +RG  D +G+ D
Sbjct: 50  RKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKD 109

Query: 62  RRRGISKYGAEKPK 76
           R++G SKYG +KPK
Sbjct: 110 RQQGRSKYGVKKPK 123

[Close]

BLAST of MC11g0753 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-21
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 2   RKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIPD 61
           RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RG RVKD P V+ H +RG  D +G+ D
Sbjct: 50  RKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKD 109

Query: 62  RRRGISKYGAEKPK 76
           R++G SKYG +KPK
Sbjct: 110 RQQGRSKYGVKKPK 123

[Close]

BLAST of MC11g0753 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-21
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 2   RKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGCRVKDSPSVKSHCIRGVKDLLGIPD 61
           RK+A+VRL++  +I A+IPG GHNLQEHS+VL+RG RVKD P V+ H +RG  D +G+ D
Sbjct: 50  RKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKD 109

Query: 62  RRRGISKYGAEKPK 76
           R++G SKYG +KPK
Sbjct: 110 RQQGRSKYGVKKPK 123

The following BLAST results are available for this feature:

BLAST of MC11g0753 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P68535	3.9e-37	96.10	Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV...	[more]
P68536	3.9e-37	96.10	Ribosomal protein S12, mitochondrial OS=Petunia parodii OX=55890 GN=RPS12 PE=3 S...	[more]
Q95869	9.5e-36	93.51	Ribosomal protein S12, mitochondrial OS=Nicotiana sylvestris OX=4096 GN=RPS12 PE...	[more]
P27070	1.6e-35	92.21	Ribosomal protein S12, mitochondrial OS=Panax ginseng OX=4054 GN=RPS12 PE=3 SV=1	[more]
P50892	4.0e-34	89.61	Ribosomal protein S12, mitochondrial OS=Raphanus sativus OX=3726 GN=RPS12 PE=3 S...	[more]

BLAST of MC11g0753 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135469.1	1.21e-48	97.40	uncharacterized protein LOC111007417 [Momordica charantia]	[more]
QVJ97865.1	4.89e-46	96.10	ribosomal protein S12 [Apium graveolens] >QVJ97979.1 ribosomal protein S12 [Apiu...	[more]
YP_004849331.1	4.89e-46	96.10	ribosomal protein S12 [Cucumis sativus] >ADZ10758.1 ribosomal protein S12 [Cucum...	[more]
YP_009709935.1	4.89e-46	96.10	ribosomal protein S12 [Manihot esculenta] >YP_009913612.1 ribosomal protein S12 ...	[more]
YP_009940638.1	4.89e-46	96.10	ribosomal protein S12 [Passiflora edulis] >QNZ92492.1 ribosomal protein S12 [Pas...	[more]

BLAST of MC11g0753 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1I5	5.86e-49	97.40	uncharacterized protein LOC111007417 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A7D6BYE6	2.37e-46	96.10	Ribosomal protein S12 OS=Luffa acutangula OX=56866 GN=rps12 PE=3 SV=1	[more]
A0A7G8P5I5	2.37e-46	96.10	Ribosomal protein S12 OS=Oenanthe virgata OX=442483 GN=rps12 PE=3 SV=1	[more]
G3EU39	2.37e-46	96.10	Ribosomal protein S12 OS=Cucumis melo subsp. melo OX=412675 GN=rps12 PE=3 SV=1	[more]
G3EIY3	2.37e-46	96.10	Ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=rps12 PE=3 SV=1	[more]

BLAST of MC11g0753 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07675.1	7.4e-36	90.91	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	7.4e-36	90.91	Ribosomal protein S12/S23 family protein	[more]
ATCG00065.1	1.8e-21	59.46	ribosomal protein S12A	[more]
ATCG01230.1	1.8e-21	59.46	ribosomal protein S12B	[more]
ATCG00905.1	1.8e-21	59.46	ribosomal protein S12C	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 1..77 e-value: 8.7E-30 score: 105.0
None	No IPR available	PANTHER	PTHR11652:SF54	RIBOSOMAL PROTEIN S12/S23-RELATED	coord: 1..76
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 2..75 e-value: 3.7E-17 score: 62.0
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 1..76
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0753.1	MC11g0753.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome