MC11g0660 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g0660
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRetrotransposon-derived protein PEG10, putative
LocationMC11: 5281338 .. 5283970 (-)
RNA-Seq ExpressionMC11g0660
SyntenyMC11g0660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCATAAAACTCAACACTATTGCCATTCTTTCTTATGGATTCTTGAGAAGTACGAGCTAGGTTACGAGAAATTACCTGCATTTTCCTGCTCCAAGCAGCGTAGACTCAGAGGAGATCATGGAGAAAGTAGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAGAACCGCTTTCCGATGTGCAAAAGCAGCATTTGTGCTTTCTTCGCTCAAATCCTCCCAAAATCGCTACCTCAGAGCCACTGTCTATGAAATAGTGAAGGTTTCAATTACATTCTATAATCAGTATCTGCGCACTCTTCTATTCGATTCAATTACTAAGAAACTTGATCGATTTTGAAAAATTGCGAATGTTAATTACCTTTCAGGAGAAAGAGAAGCTGAGGAAAACTTTGGGAGATTTGAAGGTCGAGTTGGCTAGGGAGCGTCTGAGGAATAAGAGGATCAAGCTCTGCGGTTTGATGGAATTCGTTCTTCAGATCCTGCTGGTGATAACTCTTTCGAGCTTCTTCTTTTTTATCGCCTTCAAATCTACCTGAACTCTGATAGAACCAGTAGTAGGTCCACGGAGTTCGATTATGGAACAACGCTAACCAGTTGTTCACCGAGTACATTACTGGAATCATCAGCTACCCTTTTTATTTTGTAGTCGCAGCATAGGTTCGAATGCGTGAATTTCTTCGACAAGCTCTGTAGAGTCTTCAATTTCAAAGGCTTCAGAATTTTCTTAGTTACTTGGTTCAAACGAAGTCGTCCATTTCAAGTGTCAAAAGAGAAATTTCTATACATTGCGGAGGTGGAGCGCTTCAAGCGAATTGTTTTTATTAAAAATAAAAGTGCTTTAGAAGTGTTTTCTAAATAATTAATACATACTTCAAAAATATTTTTAGAGAATTTAATAGACGCTAATGAATAAACACCTGTAACTATACGATTTGGGGTGAGAAATAAACTATTTAAACAGATTTGAAAACATAATTGTTTTTATTAAATATACTTGATTTTAACCTTTTTTACAACTTCAATATAATTTAACTGAATAAGACATTTTTATTTCCTTTATTTATATTACTCAAATATTTTTTATAATAATTTTAAGAGGCATTTCTCACATTGTCCAGTGAAAAGATTGACAATTTCTTATGTATTCTCAATCACCAAATGCATTCAGTTATTGAAAATTATTATTACACGACCTTATTATAATAATCGAGATATTTCCTTTGCAAAAAATAAAGAAAAATCGATTTGTAAACAAATTTGATTCAGAAGCCTGTTTCTATCCCCAAGGTGTAGTAGAAAGAAACTGAATATTACTATAATATCGAATGAGTACCTTCGGTTATAACATGGACTAATTTTTCCATGTCCTAATCCATTTGTTAAAGAACAATTCCCTCATAGTGTTCAGTATCGGGAAAACCATGCAAAGGAAGTATATGAATCAAAATATGGCTAAGAGCTGCGAATATTAGAAGGGACCACTGAGCTGTCGACAAAGGACTGTTTCTTGAGAGGAGAAACATTCGAGTCCTCAACCAATCTTCATCACATAGTACACTGCATTCTCAGTGCCTGTAAACATCCACCACGAGCTATAGGGTATCAAACTGGACAAATATGTTTATTTATAAGCACATACATAAACAGTTCATGAAATAAGCAGCGTTGAGAAGATGAAACTTGCCTTCAAAAAATATTGACACGTAAAGCCATCTCTTTGCCTTATTGAGTAATAGACTAAGTCCATTGCGAGAAAAACAATGAAGGATCGCGCATTCTCAGCTCTCTGTTTAATTCCCACGGTGTCTGAGCTATATTATATGTTCAACTAAAATGGATGCAATTCCTGGAGAGAGGCAGTAGCCATGAAATTTGAAACATGTGTCCCATGGGCCATCATAGCGTAGAAGAGGTGCTGAAATTCATTAGAAAACTTCGATCGAATAATAAATACAGGTTATCAGTATATTTCGATCCAGATCTTGTTCTATCACTTATCTGCTTTGCATAACGTGTTTACAACCAACTATAATCTTAGATAATTAAATTATCCATCATAAAAGCAACTTAATTGTCATAGTTTATGCACAAGACTGACATTTCCTTCTTTTATATACTGCACACTTGCAACCGCAAGCTAAGGTACAGAGTACCCGCTTCTTTCAGAGTAAAATGCTACATACTATTTATTCTAGGAGAAAGTGAAGCAAAGATATACATCCTTAAATCTAAAGCACAAGGAGTGTGTTTGGAAATGCTTTCCCAATATCCTAAAATTGTTTCTTTCTTTCTCAAATTTTTTATGGAGTTTGACTACTATCAAGAAAACATTTTTGAGATTAAGTATTTGTGGTTGTGGTACACATTGTTGTTGTCAATGTTAAATAAGGAGTAAGGACAATTTGGACCTTTGGTGGTAAGGATCCTAAGATAAGGATTTTTTTTTTTGTTTTCAGAAATGTGCAAATGAGAAACTTTGGGAATTAAAGATGGAGAGGATGACATAAGGTTCAAGGGACTTCAAATCTATTTGGACCGATAGACTTCCACTTGTCCTTGGTGTAGGAAGGTGAAGTCTGTAAATATAGTATAATATTTTGCCAGACCGTTTTTTTTTATGGAATTCGTT

mRNA sequence

ATTTCATAAAACTCAACACTATTGCCATTCTTTCTTATGGATTCTTGAGAAGTACGAGCTAGGTTACGAGAAATTACCTGCATTTTCCTGCTCCAAGCAGCGTAGACTCAGAGGAGATCATGGAGAAAGTAGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAGAACCGCTTTCCGATGTGCAAAAGCAGCATTTGTGCTTTCTTCGCTCAAATCCTCCCAAAATCGCTACCTCAGAGCCACTGTCTATGAAATAGTGAAGGAGAAAGAGAAGCTGAGGAAAACTTTGGGAGATTTGAAGGTCGAGTTGGCTAGGGAGCGTCTGAGGAATAAGAGGATCAAGCTCTGCGGTTTGATGGAATTCGTTCTTCAGATCCTGCTGAAATGTGCAAATGAGAAACTTTGGGAATTAAAGATGGAGAGGATGACATAAGGTTCAAGGGACTTCAAATCTATTTGGACCGATAGACTTCCACTTGTCCTTGGTGTAGGAAGGTGAAGTCTGTAAATATAGTATAATATTTTGCCAGACCGTTTTTTTTTATGGAATTCGTT

Coding sequence (CDS)

ATGGAGAAAGTAGAGGCGGAATCCAGAGATGAAGCAATGAGATCCAGAACCGCTTTCCGATGTGCAAAAGCAGCATTTGTGCTTTCTTCGCTCAAATCCTCCCAAAATCGCTACCTCAGAGCCACTGTCTATGAAATAGTGAAGGAGAAAGAGAAGCTGAGGAAAACTTTGGGAGATTTGAAGGTCGAGTTGGCTAGGGAGCGTCTGAGGAATAAGAGGATCAAGCTCTGCGGTTTGATGGAATTCGTTCTTCAGATCCTGCTGAAATGTGCAAATGAGAAACTTTGGGAATTAAAGATGGAGAGGATGACATAA

Protein sequence

MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNRYLRATVYEIVKEKEKLRKTLGDLKVELARERLRNKRIKLCGLMEFVLQILLKCANEKLWELKMERMT
Homology
BLAST of MC11g0660 vs. NCBI nr
Match: XP_022138206.1 (uncharacterized protein LOC111009432 [Momordica charantia])

HSP 1 Score: 157 bits (397), Expect = 1.64e-47
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0

Query: 1  MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNRYLRATVYEIVKEKEKLRKTLGDL 60
          MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQN YLRATVYEIVKEKEKLRKTLGDL
Sbjct: 1  MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGDL 60

Query: 61 KVELARERLRNKRIKLCGLMEFVLQILL 88
          KVELARERLRNKRIKLCGLMEFVLQILL
Sbjct: 61 KVELARERLRNKRIKLCGLMEFVLQILL 88

BLAST of MC11g0660 vs. NCBI nr
Match: KAA0038606.1 (putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31205.1 putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (320), Expect = 9.09e-36
Identity = 71/89 (79.78%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 1  MEKVEAESRDEAMR-SRTAFRCAKAAFVLSSLKSSQNRYLRATVYEIVKEKEKLRKTLGD 60
          ME VEAES+DEAMR S+TA RCAKAAF+LSSLKSSQNR LRAT +E  KE++ LRKT+GD
Sbjct: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61 LKVELARERLRNKRIKLCGLMEFVLQILL 88
          LK++LARERLRNKRIKLCGLMEFVLQ+LL
Sbjct: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLL 89

BLAST of MC11g0660 vs. NCBI nr
Match: XP_022940284.1 (uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 uncharacterized protein LOC111788615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126 bits (317), Expect = 2.53e-35
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 0

Query: 1  MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNRYLRATVYEIVKEKEKLRKTLGDL 60
          ME VEAESRDEAMRS+TAFRCAKAAF++SS KS QNR LRA+V E  KEKE+LRK +GDL
Sbjct: 1  MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGDL 60

Query: 61 KVELARERLRNKRIKLCGLMEFVLQILL 88
          K+ELA ER RNKRIKLCGLMEFVLQ+LL
Sbjct: 61 KIELAMERRRNKRIKLCGLMEFVLQLLL 88

BLAST of MC11g0660 vs. NCBI nr
Match: KAG7031715.1 (hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125 bits (314), Expect = 7.23e-35
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 0

Query: 1  MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNRYLRATVYEIVKEKEKLRKTLGDL 60
          ME VEAESRDEAMRS+TAFRCAKAAF++SS KS QNR LRA+V E  KEKE+LRK +GDL
Sbjct: 1  MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60

Query: 61 KVELARERLRNKRIKLCGLMEFVLQILL 88
          K+ELA ER RN+RIKLCGLMEFVLQ+LL
Sbjct: 61 KIELAMERRRNRRIKLCGLMEFVLQLLL 88

BLAST of MC11g0660 vs. NCBI nr
Match: XP_011652624.1 (uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical protein Csa_001987 [Cucumis sativus])

HSP 1 Score: 123 bits (309), Expect = 3.93e-34
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = 0

Query: 1  MEKVEAESRDEAMR-SRTAFRCAKAAFVLSSLKSSQNRYLRATVYEIVKEKEKLRKTLGD 60
          ME VEAE+++EAMR S+TA RCAKAAF+LSSLKSSQNR LRATV+E  KEK+ L KT+GD
Sbjct: 1  MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61 LKVELARERLRNKRIKLCGLMEFVLQILLKCANEKLW 96
          LK++LARER+RNKRIKLCGLMEFVLQ+LL  +   L+
Sbjct: 61 LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLF 97

BLAST of MC11g0660 vs. ExPASy TrEMBL
Match: A0A6J1C920 (uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009432 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 7.92e-48
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0

Query: 1  MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNRYLRATVYEIVKEKEKLRKTLGDL 60
          MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQN YLRATVYEIVKEKEKLRKTLGDL
Sbjct: 1  MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGDL 60

Query: 61 KVELARERLRNKRIKLCGLMEFVLQILL 88
          KVELARERLRNKRIKLCGLMEFVLQILL
Sbjct: 61 KVELARERLRNKRIKLCGLMEFVLQILL 88

BLAST of MC11g0660 vs. ExPASy TrEMBL
Match: A0A5D3E7E0 (Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004900 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 4.40e-36
Identity = 71/89 (79.78%), Postives = 81/89 (91.01%), Query Frame = 0

Query: 1  MEKVEAESRDEAMR-SRTAFRCAKAAFVLSSLKSSQNRYLRATVYEIVKEKEKLRKTLGD 60
          ME VEAES+DEAMR S+TA RCAKAAF+LSSLKSSQNR LRAT +E  KE++ LRKT+GD
Sbjct: 1  MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61 LKVELARERLRNKRIKLCGLMEFVLQILL 88
          LK++LARERLRNKRIKLCGLMEFVLQ+LL
Sbjct: 61 LKIQLARERLRNKRIKLCGLMEFVLQLLL 89

BLAST of MC11g0660 vs. ExPASy TrEMBL
Match: A0A6J1FJM5 (uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC111445952 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 1.22e-35
Identity = 70/88 (79.55%), Postives = 78/88 (88.64%), Query Frame = 0

Query: 1  MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNRYLRATVYEIVKEKEKLRKTLGDL 60
          ME VEAESRDEAMRS+TAFRCAKAAF++SS KS QNR LRA+V E  KEKE+LRK +GDL
Sbjct: 1  MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGDL 60

Query: 61 KVELARERLRNKRIKLCGLMEFVLQILL 88
          K+ELA ER RNKRIKLCGLMEFVLQ+LL
Sbjct: 61 KIELAMERRRNKRIKLCGLMEFVLQLLL 88

BLAST of MC11g0660 vs. ExPASy TrEMBL
Match: A0A0A0LJY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 1.90e-34
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = 0

Query: 1  MEKVEAESRDEAMR-SRTAFRCAKAAFVLSSLKSSQNRYLRATVYEIVKEKEKLRKTLGD 60
          ME VEAE+++EAMR S+TA RCAKAAF+LSSLKSSQNR LRATV+E  KEK+ L KT+GD
Sbjct: 1  MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61 LKVELARERLRNKRIKLCGLMEFVLQILLKCANEKLW 96
          LK++LARER+RNKRIKLCGLMEFVLQ+LL  +   L+
Sbjct: 61 LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLF 97

BLAST of MC11g0660 vs. ExPASy TrEMBL
Match: A0A5N6R7K9 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013632 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 9.39e-22
Identity = 46/80 (57.50%), Postives = 66/80 (82.50%), Query Frame = 0

Query: 7  ESRDEAMRSRTAFRCAKAAFVLSSLKSSQNRYLRATVYEIVKEKEKLRKTLGDLKVELAR 66
          E+ D+A++S+   RCAKAAF+LS+LKSS NRY+ +T  +  +E E +R+ +G+LK+ELAR
Sbjct: 10 EAMDDALKSKIVVRCAKAAFLLSALKSSPNRYVNSTTEDQHEEVELMRREIGELKMELAR 69

Query: 67 ERLRNKRIKLCGLMEFVLQI 86
          ERL+N+RIKLCGLME VL++
Sbjct: 70 ERLKNRRIKLCGLMEVVLEV 89

BLAST of MC11g0660 vs. TAIR 10
Match: AT1G78172.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-05
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 0

Query: 8  SRDEAMRSRTAFRCAKAAFVLSSLKSSQNRYLRATVYEIVKEKEK--LRKTLGDLKVELA 67
          S+DE  R  TA RCA+A  +L SL SS+      T+    +++EK   R+ + DL+ +L 
Sbjct: 3  SKDEFSRDLTAIRCARATMLLYSLASSR------TIDSAGEKQEKGETRREIEDLRRKLT 62

Query: 68 RERLRNKRIKLCGLMEFVLQILL 89
            +++  RIKLCGLME +L + L
Sbjct: 63 MVKIKMNRIKLCGLMELLLLVFL 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022138206.11.64e-4798.86uncharacterized protein LOC111009432 [Momordica charantia][more]
KAA0038606.19.09e-3679.78putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31... [more]
XP_022940284.12.53e-3579.55uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 unchar... [more]
KAG7031715.17.23e-3578.41hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_011652624.13.93e-3472.16uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
A0A6J1C9207.92e-4898.86uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A5D3E7E04.40e-3679.78Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=11... [more]
A0A6J1FJM51.22e-3579.55uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC1114459... [more]
A0A0A0LJY11.90e-3472.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1[more]
A0A5N6R7K99.39e-2257.50Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013632 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G78172.11.1e-0539.76unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 50..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g0660.1MC11g0660.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane