Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTCCTCCGCTTTCGTGTTCTTCGTGCTATTCGCCTTGGTCGCCGGCTCCTTGGGCCAGGCTCCGGGCGCCGCTCCGGCTTCCTCTCCAACCAAACCGCCTCCGGCGTCGTCGCCGAAAGCGGCTCCTCCGACTGCAGTAGCGACTCCTCCAGCGTCGACACCGTCTTCATCTCCTGCTCCGGCGGGCGTCTCTCCCGCTCCTTCCACTGGAACTTCACCACCAGCTTCGGCGCCGGCTTCTTCTCCACCTGCTCCTCCTACAGCTCCTTCAGATTCACCAGCGTCCACTCCGACTCCTGAAACTTCGATCGCAAACCCTCCGTCACAGGCTCCGTCGCCAGCCTCTACTCCCGGCAATGGCGCTGCCTTGAACAGAGTCGCCGGCACCGGATCTATCATCGCGGCTGTAATTTCCTCGGCTCTACTTCTT
mRNA sequence
GCTTCCTCCGCTTTCGTGTTCTTCGTGCTATTCGCCTTGGTCGCCGGCTCCTTGGGCCAGGCTCCGGGCGCCGCTCCGGCTTCCTCTCCAACCAAACCGCCTCCGGCGTCGTCGCCGAAAGCGGCTCCTCCGACTGCAGTAGCGACTCCTCCAGCGTCGACACCGTCTTCATCTCCTGCTCCGGCGGGCGTCTCTCCCGCTCCTTCCACTGGAACTTCACCACCAGCTTCGGCGCCGGCTTCTTCTCCACCTGCTCCTCCTACAGCTCCTTCAGATTCACCAGCGTCCACTCCGACTCCTGAAACTTCGATCGCAAACCCTCCGTCACAGGCTCCGTCGCCAGCCTCTACTCCCGGCAATGGCGCTGCCTTGAACAGAGTCGCCGGCACCGGATCTATCATCGCGGCTGTAATTTCCTCGGCTCTACTTCTT
Coding sequence (CDS)
GCTTCCTCCGCTTTCGTGTTCTTCGTGCTATTCGCCTTGGTCGCCGGCTCCTTGGGCCAGGCTCCGGGCGCCGCTCCGGCTTCCTCTCCAACCAAACCGCCTCCGGCGTCGTCGCCGAAAGCGGCTCCTCCGACTGCAGTAGCGACTCCTCCAGCGTCGACACCGTCTTCATCTCCTGCTCCGGCGGGCGTCTCTCCCGCTCCTTCCACTGGAACTTCACCACCAGCTTCGGCGCCGGCTTCTTCTCCACCTGCTCCTCCTACAGCTCCTTCAGATTCACCAGCGTCCACTCCGACTCCTGAAACTTCGATCGCAAACCCTCCGTCACAGGCTCCGTCGCCAGCCTCTACTCCCGGCAATGGCGCTGCCTTGAACAGAGTCGCCGGCACCGGATCTATCATCGCGGCTGTAATTTCCTCGGCTCTACTTCTT
Protein sequence
ASSAFVFFVLFALVAGSLGQAPGAAPASSPTKPPPASSPKAAPPTAVATPPASTPSSSPAPAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPASTPGNGAALNRVAGTGSIIAAVISSALLL
Homology
BLAST of MC11g0579 vs. NCBI nr
Match:
XP_022937303.1 (lysine-rich arabinogalactan protein 19-like [Cucurbita moschata] >XP_023534813.1 lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 165 bits (418), Expect = 1.87e-49
Identity = 110/143 (76.92%), Postives = 124/143 (86.71%), Query Frame = 0
Query: 2 SSAFVFFVLFALVAGSLGQAPGAAPASSPTKPPPASSPKAAPPTAVATPPASTPSSSPAP 61
SSAFVF VL AL+AGSLGQAPGAAPASSPTK PP SSPK+AP VATPPAS+PSSS AP
Sbjct: 4 SSAFVFVVLVALIAGSLGQAPGAAPASSPTKSPPVSSPKSAPSPTVATPPASSPSSSLAP 63
Query: 62 AGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPASTPGNG 121
+G +P+PSTGTSPPA +PA+SPPAPPTAPS+SPA TP P SI+ PP+ APSPASTPGNG
Sbjct: 64 SGAAPSPSTGTSPPAMSPATSPPAPPTAPSESPAQTPVPNPSISTPPALAPSPASTPGNG 123
Query: 122 AALNRVAGTGSIIAAVISSALLL 144
A+NR+A +GSII AVISSALLL
Sbjct: 124 GAVNRIAVSGSIIVAVISSALLL 146
BLAST of MC11g0579 vs. NCBI nr
Match:
XP_040997605.1 (classical arabinogalactan protein 10-like [Juglans microcarpa x Juglans regia])
HSP 1 Score: 91.7 bits (226), Expect = 2.04e-20
Identity = 78/146 (53.42%), Postives = 103/146 (70.55%), Query Frame = 0
Query: 1 ASSAFVFFVL-FALVAGS-LGQAPGAAPASSPTKPPPASSPKAAPPTAVATPPASTPSSS 60
A S FV+ +L FALVAGS QAPG AP SPTK PPASSPKAAPP A + P +P+ +
Sbjct: 2 ACSGFVWLMLLFALVAGSAFAQAPGGAPTGSPTKSPPASSPKAAPPPAHISTPTPSPTPT 61
Query: 61 PAPAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPASTP 120
+P +PAP++ +PP AP+SSPPAPPT+ +P S P TSI++PPS SPA +P
Sbjct: 62 MSPPASAPAPTSAATPPTGAPSSSPPAPPTS---TPTSAPGSGTSISSPPSSE-SPAGSP 121
Query: 121 GNGAALNRVAGTGSIIAAVISSALLL 144
GNGAALN V+ TGS+ + ++++ LL+
Sbjct: 122 GNGAALNTVSVTGSVASVILAATLLM 143
BLAST of MC11g0579 vs. NCBI nr
Match:
XP_018833931.2 (classical arabinogalactan protein 10-like [Juglans regia] >KAF5468121.1 hypothetical protein F2P56_012300 [Juglans regia])
HSP 1 Score: 87.8 bits (216), Expect = 6.00e-19
Identity = 79/147 (53.74%), Postives = 102/147 (69.39%), Query Frame = 0
Query: 1 ASSAFVFFVL-FALVAGS-LGQAPGAAPASSPTKPPPASSPKAAPP-TAVATPPASTPSS 60
A S FV+ +L FALVAGS QAPG AP SPTK PPASSPKAAPP T +TP TPS
Sbjct: 2 ACSGFVWLMLLFALVAGSAFAQAPGVAPTGSPTKSPPASSPKAAPPPTHTSTP---TPSP 61
Query: 61 SPAPAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPAST 120
+ +P +PAP++ +PP AP+SSPPAPPT+P+ +P P SI+ PPS SP +
Sbjct: 62 TMSPPASAPAPTSSATPPTGAPSSSPPAPPTSPASAPGLGP----SISAPPSSE-SPTGS 121
Query: 121 PGNGAALNRVAGTGSIIAAVISSALLL 144
PGNGAALN V+ TGS+ + ++++ LL+
Sbjct: 122 PGNGAALNTVSVTGSVASVILAATLLM 140
BLAST of MC11g0579 vs. NCBI nr
Match:
XP_015885267.2 (classical arabinogalactan protein 5 [Ziziphus jujuba])
HSP 1 Score: 85.1 bits (209), Expect = 7.84e-18
Identity = 84/152 (55.26%), Postives = 101/152 (66.45%), Query Frame = 0
Query: 1 ASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKPPPASSPK--AAPPTAVATPPASTPSS 60
A SAFV F +FALVAGS L QAP AAP +SPTK PPASSP A+PP TP S P+S
Sbjct: 2 AHSAFVIFTVFALVAGSALAQAPTAAPTASPTKSPPASSPTPVASPPAKTPTPTVSPPTS 61
Query: 61 SP-----APAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAP 120
SP P+ + +PS SPPAS+P SPPAPPT+ P+S P SI+ P+Q
Sbjct: 62 SPPALSPTPSAPASSPSATVSPPASSPTGSPPAPPTS---GPSSGVPP--SISQVPTQ-- 121
Query: 121 SPASTPGNGAALNRVAGTGSIIAAVISSALLL 144
SP S PGNGAALNRVAG GS+ A V ++++LL
Sbjct: 122 SPTSPPGNGAALNRVAGAGSLAAIVFAASVLL 146
BLAST of MC11g0579 vs. NCBI nr
Match:
XP_030528693.1 (classical arabinogalactan protein 10 [Rhodamnia argentea])
HSP 1 Score: 85.1 bits (209), Expect = 9.11e-18
Identity = 87/158 (55.06%), Postives = 107/158 (67.72%), Query Frame = 0
Query: 1 ASSAFVFFVLFALVAGS-LGQAPGAAP----ASSPTKPPPASSPKAAPPTAVATPPASTP 60
ASS+F + +LFAL+A S LGQAPG++P A+SPTK PPA+SP A P+ VATPPA TP
Sbjct: 2 ASSSFAYVLLFALLAASALGQAPGSSPSKSPAASPTKSPPAASPTAPAPSPVATPPAPTP 61
Query: 61 S--SSPAPAGVSPAPSTGTSP---PASAPASSPPAPPTAPSDSPASTP--TPETSIANPP 120
S S+P + PAPST T P PAS+PASSPPAPP ASTP P ++ PP
Sbjct: 62 SPVSTPPTSAPVPAPSTATPPSSAPASSPASSPPAPP-------ASTPGSAPSAAVTPPP 121
Query: 121 -SQAPSPASTP-GNGAALNRVAGTGSIIAAVISSALLL 144
+ APSP TP G+ ALNRVA GS+ AAV++ ALL+
Sbjct: 122 GAAAPSPTGTPPGSDGALNRVAIAGSVAAAVMAGALLM 152
BLAST of MC11g0579 vs. ExPASy TrEMBL
Match:
A0A6J1FFR5 (lysine-rich arabinogalactan protein 19-like OS=Cucurbita moschata OX=3662 GN=LOC111443629 PE=4 SV=1)
HSP 1 Score: 165 bits (418), Expect = 9.07e-50
Identity = 110/143 (76.92%), Postives = 124/143 (86.71%), Query Frame = 0
Query: 2 SSAFVFFVLFALVAGSLGQAPGAAPASSPTKPPPASSPKAAPPTAVATPPASTPSSSPAP 61
SSAFVF VL AL+AGSLGQAPGAAPASSPTK PP SSPK+AP VATPPAS+PSSS AP
Sbjct: 4 SSAFVFVVLVALIAGSLGQAPGAAPASSPTKSPPVSSPKSAPSPTVATPPASSPSSSLAP 63
Query: 62 AGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPASTPGNG 121
+G +P+PSTGTSPPA +PA+SPPAPPTAPS+SPA TP P SI+ PP+ APSPASTPGNG
Sbjct: 64 SGAAPSPSTGTSPPAMSPATSPPAPPTAPSESPAQTPVPNPSISTPPALAPSPASTPGNG 123
Query: 122 AALNRVAGTGSIIAAVISSALLL 144
A+NR+A +GSII AVISSALLL
Sbjct: 124 GAVNRIAVSGSIIVAVISSALLL 146
BLAST of MC11g0579 vs. ExPASy TrEMBL
Match:
A0A2I4FQK5 (classical arabinogalactan protein 10-like OS=Juglans regia OX=51240 GN=LOC109001197 PE=4 SV=2)
HSP 1 Score: 87.8 bits (216), Expect = 2.90e-19
Identity = 79/147 (53.74%), Postives = 102/147 (69.39%), Query Frame = 0
Query: 1 ASSAFVFFVL-FALVAGS-LGQAPGAAPASSPTKPPPASSPKAAPP-TAVATPPASTPSS 60
A S FV+ +L FALVAGS QAPG AP SPTK PPASSPKAAPP T +TP TPS
Sbjct: 2 ACSGFVWLMLLFALVAGSAFAQAPGVAPTGSPTKSPPASSPKAAPPPTHTSTP---TPSP 61
Query: 61 SPAPAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPAST 120
+ +P +PAP++ +PP AP+SSPPAPPT+P+ +P P SI+ PPS SP +
Sbjct: 62 TMSPPASAPAPTSSATPPTGAPSSSPPAPPTSPASAPGLGP----SISAPPSSE-SPTGS 121
Query: 121 PGNGAALNRVAGTGSIIAAVISSALLL 144
PGNGAALN V+ TGS+ + ++++ LL+
Sbjct: 122 PGNGAALNTVSVTGSVASVILAATLLM 140
BLAST of MC11g0579 vs. ExPASy TrEMBL
Match:
A0A6P4AHL3 (classical arabinogalactan protein 5 OS=Ziziphus jujuba OX=326968 GN=LOC107420744 PE=4 SV=1)
HSP 1 Score: 85.1 bits (209), Expect = 3.80e-18
Identity = 84/152 (55.26%), Postives = 101/152 (66.45%), Query Frame = 0
Query: 1 ASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKPPPASSPK--AAPPTAVATPPASTPSS 60
A SAFV F +FALVAGS L QAP AAP +SPTK PPASSP A+PP TP S P+S
Sbjct: 2 AHSAFVIFTVFALVAGSALAQAPTAAPTASPTKSPPASSPTPVASPPAKTPTPTVSPPTS 61
Query: 61 SP-----APAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAP 120
SP P+ + +PS SPPAS+P SPPAPPT+ P+S P SI+ P+Q
Sbjct: 62 SPPALSPTPSAPASSPSATVSPPASSPTGSPPAPPTS---GPSSGVPP--SISQVPTQ-- 121
Query: 121 SPASTPGNGAALNRVAGTGSIIAAVISSALLL 144
SP S PGNGAALNRVAG GS+ A V ++++LL
Sbjct: 122 SPTSPPGNGAALNRVAGAGSLAAIVFAASVLL 146
BLAST of MC11g0579 vs. ExPASy TrEMBL
Match:
A0A5N6RKA1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017895 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 7.87e-16
Identity = 84/154 (54.55%), Postives = 104/154 (67.53%), Query Frame = 0
Query: 1 ASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKPPPASSPK-AAPPTAVATPPASTPSSS 60
A S+FV +L ALVA S L Q P AAP +SPTK PP S+P AAPPTA P S+P+SS
Sbjct: 2 AYSSFVGLMLVALVASSALAQGPQAAPTASPTKSPPVSTPPTAAPPTAAPPTPTSSPTSS 61
Query: 61 P--APAGVSPAPSTGT----SPPASAP-ASSPPAPPTA-PSDSPASTPTPETSIANPPSQ 120
P +P +PAP+ T SP AS+P ASSPPAPPT+ P +S S TP + I PP
Sbjct: 62 PTVSPPSSTPAPTIATPPSSSPTASSPTASSPPAPPTSSPPESGPSASTPPSMIGGPPGA 121
Query: 121 APSPASTPGNGAALNRVAGTGSIIAAVISSALLL 144
SP STPG+ AALNRVA TGS+ +A++++ALLL
Sbjct: 122 --SPTSTPGSDAALNRVAATGSVASAILAAALLL 153
BLAST of MC11g0579 vs. ExPASy TrEMBL
Match:
A0A218X9B5 (classical arabinogalactan protein 9 OS=Punica granatum OX=22663 GN=LOC116202512 PE=4 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 1.05e-12
Identity = 73/148 (49.32%), Postives = 94/148 (63.51%), Query Frame = 0
Query: 1 ASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKPPPASSPKAAPPTAVATPPASTPSSS- 60
A S F+F VLFAL AGS L QAPGAAP+ P+ PP S P + P VATPPA+TPS +
Sbjct: 2 ARSTFLFVVLFALAAGSALAQAPGAAPSQPPSAAPPKSPPSSPAPVPVATPPAATPSPTA 61
Query: 61 --PAPAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPAS 120
P P SPAPS+ T PP S +SPPAPP +P+ +P TP +S A PP+
Sbjct: 62 TPPPPPASSPAPSSAT-PPTS---TSPPAPPKSPTGAP--TPQGPSSSATPPA-----GG 121
Query: 121 TPGNGAALNRVAGTGSIIAAVISSALLL 144
+PG+GA NR A G++ AA +++AL+L
Sbjct: 122 SPGSGAGFNRAAVAGTLAAAAMAAALML 138
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_022937303.1 | 1.87e-49 | 76.92 | lysine-rich arabinogalactan protein 19-like [Cucurbita moschata] >XP_023534813.1... | [more] |
XP_040997605.1 | 2.04e-20 | 53.42 | classical arabinogalactan protein 10-like [Juglans microcarpa x Juglans regia] | [more] |
XP_018833931.2 | 6.00e-19 | 53.74 | classical arabinogalactan protein 10-like [Juglans regia] >KAF5468121.1 hypothet... | [more] |
XP_015885267.2 | 7.84e-18 | 55.26 | classical arabinogalactan protein 5 [Ziziphus jujuba] | [more] |
XP_030528693.1 | 9.11e-18 | 55.06 | classical arabinogalactan protein 10 [Rhodamnia argentea] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1FFR5 | 9.07e-50 | 76.92 | lysine-rich arabinogalactan protein 19-like OS=Cucurbita moschata OX=3662 GN=LOC... | [more] |
A0A2I4FQK5 | 2.90e-19 | 53.74 | classical arabinogalactan protein 10-like OS=Juglans regia OX=51240 GN=LOC109001... | [more] |
A0A6P4AHL3 | 3.80e-18 | 55.26 | classical arabinogalactan protein 5 OS=Ziziphus jujuba OX=326968 GN=LOC107420744... | [more] |
A0A5N6RKA1 | 7.87e-16 | 54.55 | Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017895 PE=4 SV=1 | [more] |
A0A218X9B5 | 1.05e-12 | 49.32 | classical arabinogalactan protein 9 OS=Punica granatum OX=22663 GN=LOC116202512 ... | [more] |
Match Name | E-value | Identity | Description | |