MC11g0579 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g0579
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionClassical arabinogalactan protein
LocationMC11: 4518836 .. 4519267 (+)
RNA-Seq ExpressionMC11g0579
SyntenyMC11g0579
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTCCTCCGCTTTCGTGTTCTTCGTGCTATTCGCCTTGGTCGCCGGCTCCTTGGGCCAGGCTCCGGGCGCCGCTCCGGCTTCCTCTCCAACCAAACCGCCTCCGGCGTCGTCGCCGAAAGCGGCTCCTCCGACTGCAGTAGCGACTCCTCCAGCGTCGACACCGTCTTCATCTCCTGCTCCGGCGGGCGTCTCTCCCGCTCCTTCCACTGGAACTTCACCACCAGCTTCGGCGCCGGCTTCTTCTCCACCTGCTCCTCCTACAGCTCCTTCAGATTCACCAGCGTCCACTCCGACTCCTGAAACTTCGATCGCAAACCCTCCGTCACAGGCTCCGTCGCCAGCCTCTACTCCCGGCAATGGCGCTGCCTTGAACAGAGTCGCCGGCACCGGATCTATCATCGCGGCTGTAATTTCCTCGGCTCTACTTCTT

mRNA sequence

GCTTCCTCCGCTTTCGTGTTCTTCGTGCTATTCGCCTTGGTCGCCGGCTCCTTGGGCCAGGCTCCGGGCGCCGCTCCGGCTTCCTCTCCAACCAAACCGCCTCCGGCGTCGTCGCCGAAAGCGGCTCCTCCGACTGCAGTAGCGACTCCTCCAGCGTCGACACCGTCTTCATCTCCTGCTCCGGCGGGCGTCTCTCCCGCTCCTTCCACTGGAACTTCACCACCAGCTTCGGCGCCGGCTTCTTCTCCACCTGCTCCTCCTACAGCTCCTTCAGATTCACCAGCGTCCACTCCGACTCCTGAAACTTCGATCGCAAACCCTCCGTCACAGGCTCCGTCGCCAGCCTCTACTCCCGGCAATGGCGCTGCCTTGAACAGAGTCGCCGGCACCGGATCTATCATCGCGGCTGTAATTTCCTCGGCTCTACTTCTT

Coding sequence (CDS)

GCTTCCTCCGCTTTCGTGTTCTTCGTGCTATTCGCCTTGGTCGCCGGCTCCTTGGGCCAGGCTCCGGGCGCCGCTCCGGCTTCCTCTCCAACCAAACCGCCTCCGGCGTCGTCGCCGAAAGCGGCTCCTCCGACTGCAGTAGCGACTCCTCCAGCGTCGACACCGTCTTCATCTCCTGCTCCGGCGGGCGTCTCTCCCGCTCCTTCCACTGGAACTTCACCACCAGCTTCGGCGCCGGCTTCTTCTCCACCTGCTCCTCCTACAGCTCCTTCAGATTCACCAGCGTCCACTCCGACTCCTGAAACTTCGATCGCAAACCCTCCGTCACAGGCTCCGTCGCCAGCCTCTACTCCCGGCAATGGCGCTGCCTTGAACAGAGTCGCCGGCACCGGATCTATCATCGCGGCTGTAATTTCCTCGGCTCTACTTCTT

Protein sequence

ASSAFVFFVLFALVAGSLGQAPGAAPASSPTKPPPASSPKAAPPTAVATPPASTPSSSPAPAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPASTPGNGAALNRVAGTGSIIAAVISSALLL
Homology
BLAST of MC11g0579 vs. NCBI nr
Match: XP_022937303.1 (lysine-rich arabinogalactan protein 19-like [Cucurbita moschata] >XP_023534813.1 lysine-rich arabinogalactan protein 19-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165 bits (418), Expect = 1.87e-49
Identity = 110/143 (76.92%), Postives = 124/143 (86.71%), Query Frame = 0

Query: 2   SSAFVFFVLFALVAGSLGQAPGAAPASSPTKPPPASSPKAAPPTAVATPPASTPSSSPAP 61
           SSAFVF VL AL+AGSLGQAPGAAPASSPTK PP SSPK+AP   VATPPAS+PSSS AP
Sbjct: 4   SSAFVFVVLVALIAGSLGQAPGAAPASSPTKSPPVSSPKSAPSPTVATPPASSPSSSLAP 63

Query: 62  AGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPASTPGNG 121
           +G +P+PSTGTSPPA +PA+SPPAPPTAPS+SPA TP P  SI+ PP+ APSPASTPGNG
Sbjct: 64  SGAAPSPSTGTSPPAMSPATSPPAPPTAPSESPAQTPVPNPSISTPPALAPSPASTPGNG 123

Query: 122 AALNRVAGTGSIIAAVISSALLL 144
            A+NR+A +GSII AVISSALLL
Sbjct: 124 GAVNRIAVSGSIIVAVISSALLL 146

BLAST of MC11g0579 vs. NCBI nr
Match: XP_040997605.1 (classical arabinogalactan protein 10-like [Juglans microcarpa x Juglans regia])

HSP 1 Score: 91.7 bits (226), Expect = 2.04e-20
Identity = 78/146 (53.42%), Postives = 103/146 (70.55%), Query Frame = 0

Query: 1   ASSAFVFFVL-FALVAGS-LGQAPGAAPASSPTKPPPASSPKAAPPTAVATPPASTPSSS 60
           A S FV+ +L FALVAGS   QAPG AP  SPTK PPASSPKAAPP A  + P  +P+ +
Sbjct: 2   ACSGFVWLMLLFALVAGSAFAQAPGGAPTGSPTKSPPASSPKAAPPPAHISTPTPSPTPT 61

Query: 61  PAPAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPASTP 120
            +P   +PAP++  +PP  AP+SSPPAPPT+   +P S P   TSI++PPS   SPA +P
Sbjct: 62  MSPPASAPAPTSAATPPTGAPSSSPPAPPTS---TPTSAPGSGTSISSPPSSE-SPAGSP 121

Query: 121 GNGAALNRVAGTGSIIAAVISSALLL 144
           GNGAALN V+ TGS+ + ++++ LL+
Sbjct: 122 GNGAALNTVSVTGSVASVILAATLLM 143

BLAST of MC11g0579 vs. NCBI nr
Match: XP_018833931.2 (classical arabinogalactan protein 10-like [Juglans regia] >KAF5468121.1 hypothetical protein F2P56_012300 [Juglans regia])

HSP 1 Score: 87.8 bits (216), Expect = 6.00e-19
Identity = 79/147 (53.74%), Postives = 102/147 (69.39%), Query Frame = 0

Query: 1   ASSAFVFFVL-FALVAGS-LGQAPGAAPASSPTKPPPASSPKAAPP-TAVATPPASTPSS 60
           A S FV+ +L FALVAGS   QAPG AP  SPTK PPASSPKAAPP T  +TP   TPS 
Sbjct: 2   ACSGFVWLMLLFALVAGSAFAQAPGVAPTGSPTKSPPASSPKAAPPPTHTSTP---TPSP 61

Query: 61  SPAPAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPAST 120
           + +P   +PAP++  +PP  AP+SSPPAPPT+P+ +P   P    SI+ PPS   SP  +
Sbjct: 62  TMSPPASAPAPTSSATPPTGAPSSSPPAPPTSPASAPGLGP----SISAPPSSE-SPTGS 121

Query: 121 PGNGAALNRVAGTGSIIAAVISSALLL 144
           PGNGAALN V+ TGS+ + ++++ LL+
Sbjct: 122 PGNGAALNTVSVTGSVASVILAATLLM 140

BLAST of MC11g0579 vs. NCBI nr
Match: XP_015885267.2 (classical arabinogalactan protein 5 [Ziziphus jujuba])

HSP 1 Score: 85.1 bits (209), Expect = 7.84e-18
Identity = 84/152 (55.26%), Postives = 101/152 (66.45%), Query Frame = 0

Query: 1   ASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKPPPASSPK--AAPPTAVATPPASTPSS 60
           A SAFV F +FALVAGS L QAP AAP +SPTK PPASSP   A+PP    TP  S P+S
Sbjct: 2   AHSAFVIFTVFALVAGSALAQAPTAAPTASPTKSPPASSPTPVASPPAKTPTPTVSPPTS 61

Query: 61  SP-----APAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAP 120
           SP      P+  + +PS   SPPAS+P  SPPAPPT+    P+S   P  SI+  P+Q  
Sbjct: 62  SPPALSPTPSAPASSPSATVSPPASSPTGSPPAPPTS---GPSSGVPP--SISQVPTQ-- 121

Query: 121 SPASTPGNGAALNRVAGTGSIIAAVISSALLL 144
           SP S PGNGAALNRVAG GS+ A V ++++LL
Sbjct: 122 SPTSPPGNGAALNRVAGAGSLAAIVFAASVLL 146

BLAST of MC11g0579 vs. NCBI nr
Match: XP_030528693.1 (classical arabinogalactan protein 10 [Rhodamnia argentea])

HSP 1 Score: 85.1 bits (209), Expect = 9.11e-18
Identity = 87/158 (55.06%), Postives = 107/158 (67.72%), Query Frame = 0

Query: 1   ASSAFVFFVLFALVAGS-LGQAPGAAP----ASSPTKPPPASSPKAAPPTAVATPPASTP 60
           ASS+F + +LFAL+A S LGQAPG++P    A+SPTK PPA+SP A  P+ VATPPA TP
Sbjct: 2   ASSSFAYVLLFALLAASALGQAPGSSPSKSPAASPTKSPPAASPTAPAPSPVATPPAPTP 61

Query: 61  S--SSPAPAGVSPAPSTGTSP---PASAPASSPPAPPTAPSDSPASTP--TPETSIANPP 120
           S  S+P  +   PAPST T P   PAS+PASSPPAPP       ASTP   P  ++  PP
Sbjct: 62  SPVSTPPTSAPVPAPSTATPPSSAPASSPASSPPAPP-------ASTPGSAPSAAVTPPP 121

Query: 121 -SQAPSPASTP-GNGAALNRVAGTGSIIAAVISSALLL 144
            + APSP  TP G+  ALNRVA  GS+ AAV++ ALL+
Sbjct: 122 GAAAPSPTGTPPGSDGALNRVAIAGSVAAAVMAGALLM 152

BLAST of MC11g0579 vs. ExPASy TrEMBL
Match: A0A6J1FFR5 (lysine-rich arabinogalactan protein 19-like OS=Cucurbita moschata OX=3662 GN=LOC111443629 PE=4 SV=1)

HSP 1 Score: 165 bits (418), Expect = 9.07e-50
Identity = 110/143 (76.92%), Postives = 124/143 (86.71%), Query Frame = 0

Query: 2   SSAFVFFVLFALVAGSLGQAPGAAPASSPTKPPPASSPKAAPPTAVATPPASTPSSSPAP 61
           SSAFVF VL AL+AGSLGQAPGAAPASSPTK PP SSPK+AP   VATPPAS+PSSS AP
Sbjct: 4   SSAFVFVVLVALIAGSLGQAPGAAPASSPTKSPPVSSPKSAPSPTVATPPASSPSSSLAP 63

Query: 62  AGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPASTPGNG 121
           +G +P+PSTGTSPPA +PA+SPPAPPTAPS+SPA TP P  SI+ PP+ APSPASTPGNG
Sbjct: 64  SGAAPSPSTGTSPPAMSPATSPPAPPTAPSESPAQTPVPNPSISTPPALAPSPASTPGNG 123

Query: 122 AALNRVAGTGSIIAAVISSALLL 144
            A+NR+A +GSII AVISSALLL
Sbjct: 124 GAVNRIAVSGSIIVAVISSALLL 146

BLAST of MC11g0579 vs. ExPASy TrEMBL
Match: A0A2I4FQK5 (classical arabinogalactan protein 10-like OS=Juglans regia OX=51240 GN=LOC109001197 PE=4 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 2.90e-19
Identity = 79/147 (53.74%), Postives = 102/147 (69.39%), Query Frame = 0

Query: 1   ASSAFVFFVL-FALVAGS-LGQAPGAAPASSPTKPPPASSPKAAPP-TAVATPPASTPSS 60
           A S FV+ +L FALVAGS   QAPG AP  SPTK PPASSPKAAPP T  +TP   TPS 
Sbjct: 2   ACSGFVWLMLLFALVAGSAFAQAPGVAPTGSPTKSPPASSPKAAPPPTHTSTP---TPSP 61

Query: 61  SPAPAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPAST 120
           + +P   +PAP++  +PP  AP+SSPPAPPT+P+ +P   P    SI+ PPS   SP  +
Sbjct: 62  TMSPPASAPAPTSSATPPTGAPSSSPPAPPTSPASAPGLGP----SISAPPSSE-SPTGS 121

Query: 121 PGNGAALNRVAGTGSIIAAVISSALLL 144
           PGNGAALN V+ TGS+ + ++++ LL+
Sbjct: 122 PGNGAALNTVSVTGSVASVILAATLLM 140

BLAST of MC11g0579 vs. ExPASy TrEMBL
Match: A0A6P4AHL3 (classical arabinogalactan protein 5 OS=Ziziphus jujuba OX=326968 GN=LOC107420744 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 3.80e-18
Identity = 84/152 (55.26%), Postives = 101/152 (66.45%), Query Frame = 0

Query: 1   ASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKPPPASSPK--AAPPTAVATPPASTPSS 60
           A SAFV F +FALVAGS L QAP AAP +SPTK PPASSP   A+PP    TP  S P+S
Sbjct: 2   AHSAFVIFTVFALVAGSALAQAPTAAPTASPTKSPPASSPTPVASPPAKTPTPTVSPPTS 61

Query: 61  SP-----APAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAP 120
           SP      P+  + +PS   SPPAS+P  SPPAPPT+    P+S   P  SI+  P+Q  
Sbjct: 62  SPPALSPTPSAPASSPSATVSPPASSPTGSPPAPPTS---GPSSGVPP--SISQVPTQ-- 121

Query: 121 SPASTPGNGAALNRVAGTGSIIAAVISSALLL 144
           SP S PGNGAALNRVAG GS+ A V ++++LL
Sbjct: 122 SPTSPPGNGAALNRVAGAGSLAAIVFAASVLL 146

BLAST of MC11g0579 vs. ExPASy TrEMBL
Match: A0A5N6RKA1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017895 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.87e-16
Identity = 84/154 (54.55%), Postives = 104/154 (67.53%), Query Frame = 0

Query: 1   ASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKPPPASSPK-AAPPTAVATPPASTPSSS 60
           A S+FV  +L ALVA S L Q P AAP +SPTK PP S+P  AAPPTA    P S+P+SS
Sbjct: 2   AYSSFVGLMLVALVASSALAQGPQAAPTASPTKSPPVSTPPTAAPPTAAPPTPTSSPTSS 61

Query: 61  P--APAGVSPAPSTGT----SPPASAP-ASSPPAPPTA-PSDSPASTPTPETSIANPPSQ 120
           P  +P   +PAP+  T    SP AS+P ASSPPAPPT+ P +S  S  TP + I  PP  
Sbjct: 62  PTVSPPSSTPAPTIATPPSSSPTASSPTASSPPAPPTSSPPESGPSASTPPSMIGGPPGA 121

Query: 121 APSPASTPGNGAALNRVAGTGSIIAAVISSALLL 144
             SP STPG+ AALNRVA TGS+ +A++++ALLL
Sbjct: 122 --SPTSTPGSDAALNRVAATGSVASAILAAALLL 153

BLAST of MC11g0579 vs. ExPASy TrEMBL
Match: A0A218X9B5 (classical arabinogalactan protein 9 OS=Punica granatum OX=22663 GN=LOC116202512 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.05e-12
Identity = 73/148 (49.32%), Postives = 94/148 (63.51%), Query Frame = 0

Query: 1   ASSAFVFFVLFALVAGS-LGQAPGAAPASSPTKPPPASSPKAAPPTAVATPPASTPSSS- 60
           A S F+F VLFAL AGS L QAPGAAP+  P+  PP S P +  P  VATPPA+TPS + 
Sbjct: 2   ARSTFLFVVLFALAAGSALAQAPGAAPSQPPSAAPPKSPPSSPAPVPVATPPAATPSPTA 61

Query: 61  --PAPAGVSPAPSTGTSPPASAPASSPPAPPTAPSDSPASTPTPETSIANPPSQAPSPAS 120
             P P   SPAPS+ T PP S   +SPPAPP +P+ +P  TP   +S A PP+       
Sbjct: 62  TPPPPPASSPAPSSAT-PPTS---TSPPAPPKSPTGAP--TPQGPSSSATPPA-----GG 121

Query: 121 TPGNGAALNRVAGTGSIIAAVISSALLL 144
           +PG+GA  NR A  G++ AA +++AL+L
Sbjct: 122 SPGSGAGFNRAAVAGTLAAAAMAAALML 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022937303.11.87e-4976.92lysine-rich arabinogalactan protein 19-like [Cucurbita moschata] >XP_023534813.1... [more]
XP_040997605.12.04e-2053.42classical arabinogalactan protein 10-like [Juglans microcarpa x Juglans regia][more]
XP_018833931.26.00e-1953.74classical arabinogalactan protein 10-like [Juglans regia] >KAF5468121.1 hypothet... [more]
XP_015885267.27.84e-1855.26classical arabinogalactan protein 5 [Ziziphus jujuba][more]
XP_030528693.19.11e-1855.06classical arabinogalactan protein 10 [Rhodamnia argentea][more]
Match NameE-valueIdentityDescription
A0A6J1FFR59.07e-5076.92lysine-rich arabinogalactan protein 19-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A2I4FQK52.90e-1953.74classical arabinogalactan protein 10-like OS=Juglans regia OX=51240 GN=LOC109001... [more]
A0A6P4AHL33.80e-1855.26classical arabinogalactan protein 5 OS=Ziziphus jujuba OX=326968 GN=LOC107420744... [more]
A0A5N6RKA17.87e-1654.55Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017895 PE=4 SV=1[more]
A0A218X9B51.05e-1249.32classical arabinogalactan protein 9 OS=Punica granatum OX=22663 GN=LOC116202512 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 62..79
score: 25.56
coord: 82..107
score: 31.54
coord: 23..44
score: 29.09
coord: 44..60
score: 52.94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..125
NoneNo IPR availablePANTHERPTHR36321:SF12CLASSICAL ARABINOGALACTAN PROTEIN 9coord: 2..144
IPR044959Classical arabinogalactan proteinPANTHERPTHR36321CLASSICAL ARABINOGALACTAN PROTEIN 9coord: 2..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g0579.1MC11g0579.1mRNA