MC11g0303 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0303
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Pre-mRNA-processing protein 40A isoform X1
Location	MC11: 2396373 .. 2396747 (-)
RNA-Seq Expression	MC11g0303
Synteny	MC11g0303

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAAGAAGCCAGGGGTGTGTAAATCAGCAGAGGTGGCGCCGCCGCACAGCCGCCGCGACGGCGACGTTCTGATGCCGAAGCAGCTCCGGCCACCGCCTTGTTCTTCGGCGAGAAAAGGGAACAGAAAGCTGCAGAAAGACGAGGGGCGCGCTGAAGACCCGTTTCTTGCGGCCTATAGGGAGTGCACCGGAGATCAGAGTAGTAATAATTACAAGTCGCACAAAAATTTGTCTGGTTTTGGAGGGTGGATAAAAATGTTTGGTACTTTGTCCTGCAAGCACTTCACGGCGGTTCGAGATGATAGTTTGATCAGTTCTTCTTCTTCTTCTTCTTCT

mRNA sequence

AACAAAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAAGAAGCCAGGGGTGTGTAAATCAGCAGAGGTGGCGCCGCCGCACAGCCGCCGCGACGGCGACGTTCTGATGCCGAAGCAGCTCCGGCCACCGCCTTGTTCTTCGGCGAGAAAAGGGAACAGAAAGCTGCAGAAAGACGAGGGGCGCGCTGAAGACCCGTTTCTTGCGGCCTATAGGGAGTGCACCGGAGATCAGAGTAGTAATAATTACAAGTCGCACAAAAATTTGTCTGGTTTTGGAGGGTGGATAAAAATGTTTGGTACTTTGTCCTGCAAGCACTTCACGGCGGTTCGAGATGATAGTTTGATCAGTTCTTCTTCTTCTTCTTCTTCT

Coding sequence (CDS)

AACAAAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAAGAAGCCAGGGGTGTGTAAATCAGCAGAGGTGGCGCCGCCGCACAGCCGCCGCGACGGCGACGTTCTGATGCCGAAGCAGCTCCGGCCACCGCCTTGTTCTTCGGCGAGAAAAGGGAACAGAAAGCTGCAGAAAGACGAGGGGCGCGCTGAAGACCCGTTTCTTGCGGCCTATAGGGAGTGCACCGGAGATCAGAGTAGTAATAATTACAAGTCGCACAAAAATTTGTCTGGTTTTGGAGGGTGGATAAAAATGTTTGGTACTTTGTCCTGCAAGCACTTCACGGCGGTTCGAGATGATAGTTTGATCAGTTCTTCTTCTTCTTCTTCTTCT

Protein sequence

NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDGDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWIKMFGTLSCKHFTAVRDDSLISSSSSSSS

Homology

[Close]

BLAST of MC11g0303 vs. NCBI nr
Match: KAA0064468.1 (hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK20120.1 hypothetical protein E5676_scaffold134G002450 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (391), Expect = 7.63e-46
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDG--DVLMPKQLRPPPCSSARKGNRKLQ 60
           NKTHSRGRVAFSWE +PGVCK+A VAPP+   D   D  + K+L+PPPC+ ARKGN+KL 
Sbjct: 5   NKTHSRGRVAFSWENRPGVCKAA-VAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLL 64

Query: 61  KDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWIKM--FGTLSCKHFTAVRDDSL 119
           + +G AEDPFLAAYRECT +    N K  KN  GFGGW+ M  FG LSCK  TAVRDDSL
Sbjct: 65  QKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSL 124

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BLAST of MC11g0303 vs. NCBI nr
Match: KAE8649893.1 (hypothetical protein Csa_012691 [Cucumis sativus])

HSP 1 Score: 121 bits (304), Expect = 1.76e-32
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1  NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDGDVLMPKQLRPPPCSSARKGNRKLQKD 60
          NKTHSRGRVAFSWE KPGVCK+A VAPPH   DGD  + KQL+PPPC+ ARKGN+KLQKD
Sbjct: 5  NKTHSRGRVAFSWENKPGVCKAA-VAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKD 64

Query: 61 EGRAEDPFLAAYRECTGD 78
           G AEDPFLAAY+ECT +
Sbjct: 65 GG-AEDPFLAAYKECTSE 80

[Close]

BLAST of MC11g0303 vs. NCBI nr
Match: KAG7024319.1 (hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113 bits (283), Expect = 2.99e-29
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1  NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDGDVLMPKQLRPPPCSSARKGNRKLQKD 60
          N+ HSRGRVAFSWE KPG CK+A VAPP  R   D L  K+LRPPPC+SARKG +K+QKD
Sbjct: 5  NRAHSRGRVAFSWENKPGECKAA-VAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKD 64

Query: 61 EGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGF 93
           G  EDPFLAA+REC+  +   N K  +N +GF
Sbjct: 65 -GVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 95

[Close]

BLAST of MC11g0303 vs. NCBI nr
Match: KAG6591440.1 (Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113 bits (283), Expect = 3.01e-26
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1  NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDGDVLMPKQLRPPPCSSARKGNRKLQKD 60
          N+ HSRGRVAFSWE KPG CK+A VAPP  R   D L  K+LRPPPC+SARKG +K+QKD
Sbjct: 5  NRAHSRGRVAFSWENKPGECKAA-VAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKD 64

Query: 61 EGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGF 93
           G  EDPFLAA+REC+  +   N K  +N +GF
Sbjct: 65 -GVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 95

[Close]

BLAST of MC11g0303 vs. NCBI nr
Match: KAF3960963.1 (hypothetical protein CMV_014368 [Castanea mollissima])

HSP 1 Score: 80.9 bits (198), Expect = 1.74e-16
Identity = 58/140 (41.43%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 1   NKTHSRGRVAFSWEKKPGV----------------------CKSAEVAPPHSRRDGDV-L 60
           +K HS G + FSWE KPGV                      C S+E A  +S  D  + L
Sbjct: 4   SKAHSWGTIPFSWENKPGVSKVTQQECPTKGDFVLKLPPPPCPSSETARTNSVHDFQIPL 63

Query: 61  MPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWI 117
            P    PP  SS++KG RK        EDPFLAAY+ECT  +S  N KS KN  GFG + 
Sbjct: 64  PPCAFHPPSRSSSKKGLRKQ-------EDPFLAAYKECT--KSIRNGKSVKNDIGFG-FR 123

[Close]

BLAST of MC11g0303 vs. ExPASy TrEMBL
Match: A0A0A0L2M9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 7.48e-50
Identity = 84/121 (69.42%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 1   NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDGDVLMPKQLRPPPCSSARKGNRKLQKD 60
           NKTHSRGRVAFSWE KPGVCK+A VAPPH   DGD  + KQL+PPPC+ ARKGN+KLQKD
Sbjct: 5   NKTHSRGRVAFSWENKPGVCKAA-VAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKD 64

Query: 61  EGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWI--KMFGTLSCKHFTAVRDDSLIS 119
            G AEDPFLAAY+ECT +      K  KN SGFGGW+    F  LSCK  TAVRDDSLIS
Sbjct: 65  GG-AEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSLIS 123

[Close]

BLAST of MC11g0303 vs. ExPASy TrEMBL
Match: A0A5A7VA56 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002450 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 3.69e-46
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDG--DVLMPKQLRPPPCSSARKGNRKLQ 60
           NKTHSRGRVAFSWE +PGVCK+A VAPP+   D   D  + K+L+PPPC+ ARKGN+KL 
Sbjct: 5   NKTHSRGRVAFSWENRPGVCKAA-VAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLL 64

Query: 61  KDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWIKM--FGTLSCKHFTAVRDDSL 119
           + +G AEDPFLAAYRECT +    N K  KN  GFGGW+ M  FG LSCK  TAVRDDSL
Sbjct: 65  QKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSL 124

[Close]

BLAST of MC11g0303 vs. ExPASy TrEMBL
Match: A0A2C9VZY0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G183500 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.59e-16
Identity = 55/139 (39.57%), Postives = 70/139 (50.36%), Query Frame = 0


Query: 2   KTHSRGRVAFSWEKKPGVCKS-----------AEVAPPH-----------SRRDGDV-LM 61
           K H +G V FSWEKKPGV K+            ++ PP            S  D  + L 
Sbjct: 5   KAHPKGNVPFSWEKKPGVSKAISQMFHSEADFVKLPPPPCLIENQSPARVSTHDIQIPLP 64

Query: 62  PKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWIK 117
           P   +PP  SS+RKG  K Q      EDPFLAAY+ECT   S +N K+   L    G  K
Sbjct: 65  PCTFQPPSRSSSRKGGLKKQ------EDPFLAAYKECTKSTSDSNKKTGGKLCRNVGLRK 124

[Close]

BLAST of MC11g0303 vs. ExPASy TrEMBL
Match: A0A1R3HKK6 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.73e-15
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 0


Query: 2   KTHSRGRVAFSWEKKPGVCK------------------------SAEVAPPHSRRDGDVL 61
           K HS+G V FSWE KPGVCK                        +A V+  +S +D  + 
Sbjct: 5   KVHSQGNVPFSWENKPGVCKMTSQDCLKEDFFLQKLPPPPCPPETARVSISNSIQDNKIP 64

Query: 62  MPK-QLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGW 117
            P    +PP  SS+R+G +K       ++DPFLAAY+ECT  +S+N  K  KN++G G  
Sbjct: 65  PPPGAFQPPSRSSSRRGLKK-------SDDPFLAAYKECT--KSTNKGKLAKNVNGGGSG 124

[Close]

BLAST of MC11g0303 vs. ExPASy TrEMBL
Match: A0A2N9EQJ5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8969 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.05e-14
Identity = 56/143 (39.16%), Postives = 69/143 (48.25%), Query Frame = 0


Query: 1   NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDGDVLMPKQLRPPPC------------- 60
           +K HS+G + FSWE KPGV K  +   P    DGD ++  +L PPPC             
Sbjct: 5   SKAHSQGTIPFSWENKPGVSKVTQQECPI---DGDFVL--KLPPPPCLSEPAKISVHDFQ 64

Query: 61  -------------SSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFG 117
                        SS++KG RK        EDPFLAAY ECT  +S    KS KN  G  
Sbjct: 65  IPLPPCAFQPPSRSSSKKGLRKQ-------EDPFLAAYMECT--KSIRKGKSIKNDVG-S 124

The following BLAST results are available for this feature:

BLAST of MC11g0303 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0303 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064468.1	7.63e-46	65.04	hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK201...	[more]
KAE8649893.1	1.76e-32	75.64	hypothetical protein Csa_012691 [Cucumis sativus]	[more]
KAG7024319.1	2.99e-29	61.29	hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591440.1	3.01e-26	61.29	Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF3960963.1	1.74e-16	41.43	hypothetical protein CMV_014368 [Castanea mollissima]	[more]

BLAST of MC11g0303 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2M9	7.48e-50	69.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1	[more]
A0A5A7VA56	3.69e-46	65.04	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2C9VZY0	1.59e-16	39.57	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G183500 PE=4 SV=...	[more]
A0A1R3HKK6	1.73e-15	37.06	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1	[more]
A0A2N9EQJ5	1.05e-14	39.16	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8969 PE=4 SV=1	[more]

BLAST of MC11g0303 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..65
None	No IPR available	PANTHER	PTHR33696:SF15	SUBFAMILY NOT NAMED	coord: 35..121
None	No IPR available	PANTHER	PTHR33696	T22J18.15-RELATED	coord: 35..121 coord: 2..49
None	No IPR available	PANTHER	PTHR33696:SF15	SUBFAMILY NOT NAMED	coord: 2..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0303.1	MC11g0303.1	mRNA