MC11g0303 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g0303
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPre-mRNA-processing protein 40A isoform X1
LocationMC11: 2396373 .. 2396747 (-)
RNA-Seq ExpressionMC11g0303
SyntenyMC11g0303
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAAAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAAGAAGCCAGGGGTGTGTAAATCAGCAGAGGTGGCGCCGCCGCACAGCCGCCGCGACGGCGACGTTCTGATGCCGAAGCAGCTCCGGCCACCGCCTTGTTCTTCGGCGAGAAAAGGGAACAGAAAGCTGCAGAAAGACGAGGGGCGCGCTGAAGACCCGTTTCTTGCGGCCTATAGGGAGTGCACCGGAGATCAGAGTAGTAATAATTACAAGTCGCACAAAAATTTGTCTGGTTTTGGAGGGTGGATAAAAATGTTTGGTACTTTGTCCTGCAAGCACTTCACGGCGGTTCGAGATGATAGTTTGATCAGTTCTTCTTCTTCTTCTTCTTCT

mRNA sequence

AACAAAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAAGAAGCCAGGGGTGTGTAAATCAGCAGAGGTGGCGCCGCCGCACAGCCGCCGCGACGGCGACGTTCTGATGCCGAAGCAGCTCCGGCCACCGCCTTGTTCTTCGGCGAGAAAAGGGAACAGAAAGCTGCAGAAAGACGAGGGGCGCGCTGAAGACCCGTTTCTTGCGGCCTATAGGGAGTGCACCGGAGATCAGAGTAGTAATAATTACAAGTCGCACAAAAATTTGTCTGGTTTTGGAGGGTGGATAAAAATGTTTGGTACTTTGTCCTGCAAGCACTTCACGGCGGTTCGAGATGATAGTTTGATCAGTTCTTCTTCTTCTTCTTCTTCT

Coding sequence (CDS)

AACAAAACCCATTCAAGAGGCAGAGTGGCTTTCTCGTGGGAGAAGAAGCCAGGGGTGTGTAAATCAGCAGAGGTGGCGCCGCCGCACAGCCGCCGCGACGGCGACGTTCTGATGCCGAAGCAGCTCCGGCCACCGCCTTGTTCTTCGGCGAGAAAAGGGAACAGAAAGCTGCAGAAAGACGAGGGGCGCGCTGAAGACCCGTTTCTTGCGGCCTATAGGGAGTGCACCGGAGATCAGAGTAGTAATAATTACAAGTCGCACAAAAATTTGTCTGGTTTTGGAGGGTGGATAAAAATGTTTGGTACTTTGTCCTGCAAGCACTTCACGGCGGTTCGAGATGATAGTTTGATCAGTTCTTCTTCTTCTTCTTCTTCT

Protein sequence

NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDGDVLMPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWIKMFGTLSCKHFTAVRDDSLISSSSSSSS
Homology
BLAST of MC11g0303 vs. NCBI nr
Match: KAA0064468.1 (hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK20120.1 hypothetical protein E5676_scaffold134G002450 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (391), Expect = 7.63e-46
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 0

Query: 1   NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDG--DVLMPKQLRPPPCSSARKGNRKLQ 60
           NKTHSRGRVAFSWE +PGVCK+A VAPP+   D   D  + K+L+PPPC+ ARKGN+KL 
Sbjct: 5   NKTHSRGRVAFSWENRPGVCKAA-VAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLL 64

Query: 61  KDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWIKM--FGTLSCKHFTAVRDDSL 119
           + +G AEDPFLAAYRECT +    N K  KN  GFGGW+ M  FG LSCK  TAVRDDSL
Sbjct: 65  QKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSL 124

BLAST of MC11g0303 vs. NCBI nr
Match: KAE8649893.1 (hypothetical protein Csa_012691 [Cucumis sativus])

HSP 1 Score: 121 bits (304), Expect = 1.76e-32
Identity = 59/78 (75.64%), Postives = 66/78 (84.62%), Query Frame = 0

Query: 1  NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDGDVLMPKQLRPPPCSSARKGNRKLQKD 60
          NKTHSRGRVAFSWE KPGVCK+A VAPPH   DGD  + KQL+PPPC+ ARKGN+KLQKD
Sbjct: 5  NKTHSRGRVAFSWENKPGVCKAA-VAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKD 64

Query: 61 EGRAEDPFLAAYRECTGD 78
           G AEDPFLAAY+ECT +
Sbjct: 65 GG-AEDPFLAAYKECTSE 80

BLAST of MC11g0303 vs. NCBI nr
Match: KAG7024319.1 (hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113 bits (283), Expect = 2.99e-29
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 0

Query: 1  NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDGDVLMPKQLRPPPCSSARKGNRKLQKD 60
          N+ HSRGRVAFSWE KPG CK+A VAPP  R   D L  K+LRPPPC+SARKG +K+QKD
Sbjct: 5  NRAHSRGRVAFSWENKPGECKAA-VAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKD 64

Query: 61 EGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGF 93
           G  EDPFLAA+REC+  +   N K  +N +GF
Sbjct: 65 -GVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 95

BLAST of MC11g0303 vs. NCBI nr
Match: KAG6591440.1 (Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113 bits (283), Expect = 3.01e-26
Identity = 57/93 (61.29%), Postives = 68/93 (73.12%), Query Frame = 0

Query: 1  NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDGDVLMPKQLRPPPCSSARKGNRKLQKD 60
          N+ HSRGRVAFSWE KPG CK+A VAPP  R   D L  K+LRPPPC+SARKG +K+QKD
Sbjct: 5  NRAHSRGRVAFSWENKPGECKAA-VAPPFYRLGDDDLGQKKLRPPPCTSARKGQKKVQKD 64

Query: 61 EGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGF 93
           G  EDPFLAA+REC+  +   N K  +N +GF
Sbjct: 65 -GVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 95

BLAST of MC11g0303 vs. NCBI nr
Match: KAF3960963.1 (hypothetical protein CMV_014368 [Castanea mollissima])

HSP 1 Score: 80.9 bits (198), Expect = 1.74e-16
Identity = 58/140 (41.43%), Postives = 70/140 (50.00%), Query Frame = 0

Query: 1   NKTHSRGRVAFSWEKKPGV----------------------CKSAEVAPPHSRRDGDV-L 60
           +K HS G + FSWE KPGV                      C S+E A  +S  D  + L
Sbjct: 4   SKAHSWGTIPFSWENKPGVSKVTQQECPTKGDFVLKLPPPPCPSSETARTNSVHDFQIPL 63

Query: 61  MPKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWI 117
            P    PP  SS++KG RK        EDPFLAAY+ECT  +S  N KS KN  GFG + 
Sbjct: 64  PPCAFHPPSRSSSKKGLRKQ-------EDPFLAAYKECT--KSIRNGKSVKNDIGFG-FR 123

BLAST of MC11g0303 vs. ExPASy TrEMBL
Match: A0A0A0L2M9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 7.48e-50
Identity = 84/121 (69.42%), Postives = 92/121 (76.03%), Query Frame = 0

Query: 1   NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDGDVLMPKQLRPPPCSSARKGNRKLQKD 60
           NKTHSRGRVAFSWE KPGVCK+A VAPPH   DGD  + KQL+PPPC+ ARKGN+KLQKD
Sbjct: 5   NKTHSRGRVAFSWENKPGVCKAA-VAPPHGFCDGDDPLKKQLQPPPCTPARKGNKKLQKD 64

Query: 61  EGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWI--KMFGTLSCKHFTAVRDDSLIS 119
            G AEDPFLAAY+ECT +      K  KN SGFGGW+    F  LSCK  TAVRDDSLIS
Sbjct: 65  GG-AEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRDDSLIS 123

BLAST of MC11g0303 vs. ExPASy TrEMBL
Match: A0A5A7VA56 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002450 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 3.69e-46
Identity = 80/123 (65.04%), Postives = 92/123 (74.80%), Query Frame = 0

Query: 1   NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDG--DVLMPKQLRPPPCSSARKGNRKLQ 60
           NKTHSRGRVAFSWE +PGVCK+A VAPP+   D   D  + K+L+PPPC+ ARKGN+KL 
Sbjct: 5   NKTHSRGRVAFSWENRPGVCKAA-VAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLL 64

Query: 61  KDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWIKM--FGTLSCKHFTAVRDDSL 119
           + +G AEDPFLAAYRECT +    N K  KN  GFGGW+ M  FG LSCK  TAVRDDSL
Sbjct: 65  QKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSL 124

BLAST of MC11g0303 vs. ExPASy TrEMBL
Match: A0A2C9VZY0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G183500 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.59e-16
Identity = 55/139 (39.57%), Postives = 70/139 (50.36%), Query Frame = 0

Query: 2   KTHSRGRVAFSWEKKPGVCKS-----------AEVAPPH-----------SRRDGDV-LM 61
           K H +G V FSWEKKPGV K+            ++ PP            S  D  + L 
Sbjct: 5   KAHPKGNVPFSWEKKPGVSKAISQMFHSEADFVKLPPPPCLIENQSPARVSTHDIQIPLP 64

Query: 62  PKQLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGWIK 117
           P   +PP  SS+RKG  K Q      EDPFLAAY+ECT   S +N K+   L    G  K
Sbjct: 65  PCTFQPPSRSSSRKGGLKKQ------EDPFLAAYKECTKSTSDSNKKTGGKLCRNVGLRK 124

BLAST of MC11g0303 vs. ExPASy TrEMBL
Match: A0A1R3HKK6 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.73e-15
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 0

Query: 2   KTHSRGRVAFSWEKKPGVCK------------------------SAEVAPPHSRRDGDVL 61
           K HS+G V FSWE KPGVCK                        +A V+  +S +D  + 
Sbjct: 5   KVHSQGNVPFSWENKPGVCKMTSQDCLKEDFFLQKLPPPPCPPETARVSISNSIQDNKIP 64

Query: 62  MPK-QLRPPPCSSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFGGW 117
            P    +PP  SS+R+G +K       ++DPFLAAY+ECT  +S+N  K  KN++G G  
Sbjct: 65  PPPGAFQPPSRSSSRRGLKK-------SDDPFLAAYKECT--KSTNKGKLAKNVNGGGSG 124

BLAST of MC11g0303 vs. ExPASy TrEMBL
Match: A0A2N9EQJ5 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8969 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.05e-14
Identity = 56/143 (39.16%), Postives = 69/143 (48.25%), Query Frame = 0

Query: 1   NKTHSRGRVAFSWEKKPGVCKSAEVAPPHSRRDGDVLMPKQLRPPPC------------- 60
           +K HS+G + FSWE KPGV K  +   P    DGD ++  +L PPPC             
Sbjct: 5   SKAHSQGTIPFSWENKPGVSKVTQQECPI---DGDFVL--KLPPPPCLSEPAKISVHDFQ 64

Query: 61  -------------SSARKGNRKLQKDEGRAEDPFLAAYRECTGDQSSNNYKSHKNLSGFG 117
                        SS++KG RK        EDPFLAAY ECT  +S    KS KN  G  
Sbjct: 65  IPLPPCAFQPPSRSSSKKGLRKQ-------EDPFLAAYMECT--KSIRKGKSIKNDVG-S 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0064468.17.63e-4665.04hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK201... [more]
KAE8649893.11.76e-3275.64hypothetical protein Csa_012691 [Cucumis sativus][more]
KAG7024319.12.99e-2961.29hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6591440.13.01e-2661.29Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia][more]
KAF3960963.11.74e-1641.43hypothetical protein CMV_014368 [Castanea mollissima][more]
Match NameE-valueIdentityDescription
A0A0A0L2M97.48e-5069.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1[more]
A0A5A7VA563.69e-4665.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2C9VZY01.59e-1639.57Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G183500 PE=4 SV=... [more]
A0A1R3HKK61.73e-1537.06Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1[more]
A0A2N9EQJ51.05e-1439.16Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8969 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..65
NoneNo IPR availablePANTHERPTHR33696:SF15SUBFAMILY NOT NAMEDcoord: 35..121
NoneNo IPR availablePANTHERPTHR33696T22J18.15-RELATEDcoord: 35..121
coord: 2..49
NoneNo IPR availablePANTHERPTHR33696:SF15SUBFAMILY NOT NAMEDcoord: 2..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g0303.1MC11g0303.1mRNA