MC11g0081 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g0081
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionLYR motif-containing protein 2
LocationMC11: 604275 .. 604736 (+)
RNA-Seq ExpressionMC11g0081
SyntenyMC11g0081
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTCTCCCTTGATTTACATGAATTTATTCTACGGGCAAGGGTGTTGAAACTGTTCAGGCAGGCTTTAAGAACTGCTCGCAAAGCTCCTGTTCACGCTAGAGGTTAAGCTCCTGATCATGAACATCCACTCTTTATACAATTTTCCTGTCATGATCTTCAAAGTTCATTTGAATTTTCCTTATCAGCATTAACAACGATGGGGTTGATCCAATGTCTATGCTTAATTCTTTGAATTCAAAAAGGTTTCCCCAGTTCTTTAATTGGATAAGGTGTTGTTTTGGTTTATTCTTGAGAATGTCTGTTTTGATTTTGAACAGAGGAACTGAGGCATACGATCAGGCAAGAAATGGAAAACAACCGCAGCTGTAATGACAAACAGAAAGTTAGGTATCTGATCAGTGAAGGAATAGAGAGTTTGAAGCGTTTAGACGAGATGTTGGATATGCAAGGTCATTCA

mRNA sequence

ATGGTTGTCTCCCTTGATTTACATGAATTTATTCTACGGGCAAGGGTGTTGAAACTGTTCAGGCAGGCTTTAAGAACTGCTCGCAAAGCTCCTGTTCACGCTAGAGAGGAACTGAGGCATACGATCAGGCAAGAAATGGAAAACAACCGCAGCTGTAATGACAAACAGAAAGTTAGGTATCTGATCAGTGAAGGAATAGAGAGTTTGAAGCGTTTAGACGAGATGTTGGATATGCAAGGTCATTCA

Coding sequence (CDS)

ATGGTTGTCTCCCTTGATTTACATGAATTTATTCTACGGGCAAGGGTGTTGAAACTGTTCAGGCAGGCTTTAAGAACTGCTCGCAAAGCTCCTGTTCACGCTAGAGAGGAACTGAGGCATACGATCAGGCAAGAAATGGAAAACAACCGCAGCTGTAATGACAAACAGAAAGTTAGGTATCTGATCAGTGAAGGAATAGAGAGTTTGAAGCGTTTAGACGAGATGTTGGATATGCAAGGTCATTCA

Protein sequence

MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRYLISEGIESLKRLDEMLDMQGHS
Homology
BLAST of MC11g0081 vs. NCBI nr
Match: XP_022140612.1 (uncharacterized protein LOC111011218 [Momordica charantia] >XP_022140617.1 uncharacterized protein LOC111011218 [Momordica charantia])

HSP 1 Score: 154 bits (390), Expect = 3.97e-47
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY
Sbjct: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 82
          LISEGIESLKRLDEMLDMQGHS
Sbjct: 61 LISEGIESLKRLDEMLDMQGHS 82

BLAST of MC11g0081 vs. NCBI nr
Match: XP_023535371.1 (uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372.1 uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139 bits (350), Expect = 5.04e-41
Identity = 72/82 (87.80%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV++LDL EFILRARVLKL+RQALRT RKAPVHAREELRHTIRQEMENNRSC+D+QKVR+
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKVRF 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 82
          L+SEGIE LKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

BLAST of MC11g0081 vs. NCBI nr
Match: KAG6591251.1 (LYR motif-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138 bits (347), Expect = 1.45e-40
Identity = 71/82 (86.59%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV++LDL EFILRARVLKL+RQALRT RKAPVHAREELRHTIRQEMENNRSC+D+QKVR+
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKVRF 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 82
          L+SEG+E LKRLDEMLDMQGHS
Sbjct: 61 LLSEGMERLKRLDEMLDMQGHS 82

BLAST of MC11g0081 vs. NCBI nr
Match: XP_022936861.1 (uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 uncharacterized protein LOC111443321 [Cucurbita moschata])

HSP 1 Score: 137 bits (346), Expect = 2.05e-40
Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV++LDL EFILRARVLKL+RQALRT RKAPVHAREELRHTIRQEMENNR C+D+QKVR+
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 82
          L+SEGIE LKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

BLAST of MC11g0081 vs. NCBI nr
Match: XP_038877724.1 (uncharacterized protein LOC120069952 [Benincasa hispida] >XP_038877725.1 uncharacterized protein LOC120069952 [Benincasa hispida] >XP_038877726.1 uncharacterized protein LOC120069952 [Benincasa hispida])

HSP 1 Score: 137 bits (346), Expect = 2.18e-40
Identity = 69/82 (84.15%), Postives = 79/82 (96.34%), Query Frame = 0

Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          M +SLDL +FILRARVLKL+RQALRTARKAPVHAREEL+HT+RQEMENNR+CN++QK+RY
Sbjct: 3  MALSLDLQDFILRARVLKLYRQALRTARKAPVHAREELKHTMRQEMENNRNCNERQKIRY 62

Query: 61 LISEGIESLKRLDEMLDMQGHS 82
          L+SEGIE LKRLDEMLDMQGHS
Sbjct: 63 LVSEGIERLKRLDEMLDMQGHS 84

BLAST of MC11g0081 vs. ExPASy TrEMBL
Match: A0A6J1CHJ1 (uncharacterized protein LOC111011218 OS=Momordica charantia OX=3673 GN=LOC111011218 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 1.92e-47
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY
Sbjct: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 82
          LISEGIESLKRLDEMLDMQGHS
Sbjct: 61 LISEGIESLKRLDEMLDMQGHS 82

BLAST of MC11g0081 vs. ExPASy TrEMBL
Match: A0A6J1F8N3 (uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC111443321 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 9.94e-41
Identity = 71/82 (86.59%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV++LDL EFILRARVLKL+RQALRT RKAPVHAREELRHTIRQEMENNR C+D+QKVR+
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRGCSDRQKVRF 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 82
          L+SEGIE LKRLDEMLDMQGHS
Sbjct: 61 LLSEGIERLKRLDEMLDMQGHS 82

BLAST of MC11g0081 vs. ExPASy TrEMBL
Match: A0A6J1IFA5 (uncharacterized protein LOC111476418 OS=Cucurbita maxima OX=3661 GN=LOC111476418 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 4.05e-40
Identity = 70/82 (85.37%), Postives = 78/82 (95.12%), Query Frame = 0

Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV++LDL EFILRARVLKL+RQALRT RKAPVHAREELRHTIRQEMENNRSC+D+QK+R+
Sbjct: 1  MVLALDLQEFILRARVLKLYRQALRTTRKAPVHAREELRHTIRQEMENNRSCSDRQKIRF 60

Query: 61 LISEGIESLKRLDEMLDMQGHS 82
          L+SEG E LKRLDEMLDMQGHS
Sbjct: 61 LLSEGRERLKRLDEMLDMQGHS 82

BLAST of MC11g0081 vs. ExPASy TrEMBL
Match: A0A6J1FM54 (uncharacterized protein LOC111446466 OS=Cucurbita moschata OX=3662 GN=LOC111446466 PE=4 SV=1)

HSP 1 Score: 131 bits (330), Expect = 2.67e-38
Identity = 68/81 (83.95%), Postives = 77/81 (95.06%), Query Frame = 0

Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV+SLDL EFILRARVLKL+R ALRTA+KAPVHAREELRHTIRQEMENNR CN++QKVR+
Sbjct: 1  MVLSLDLQEFILRARVLKLYRHALRTAQKAPVHAREELRHTIRQEMENNRGCNERQKVRF 60

Query: 61 LISEGIESLKRLDEMLDMQGH 81
          L+SEGIE LKRL+EMLDMQG+
Sbjct: 61 LLSEGIERLKRLEEMLDMQGN 81

BLAST of MC11g0081 vs. ExPASy TrEMBL
Match: A0A6J1IY12 (uncharacterized protein LOC111480962 OS=Cucurbita maxima OX=3661 GN=LOC111480962 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 1.04e-35
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 0

Query: 1  MVVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRY 60
          MV+SLDL EFILRARVLKL+RQALR A+KAPVHAREELR  IRQEMENNR CN++QKVR+
Sbjct: 1  MVLSLDLQEFILRARVLKLYRQALRIAQKAPVHAREELRLAIRQEMENNRGCNERQKVRF 60

Query: 61 LISEGIESLKRLDEMLDMQGH 81
          L+SEGIE LKRL+EMLDMQG+
Sbjct: 61 LLSEGIERLKRLEEMLDMQGN 81

BLAST of MC11g0081 vs. TAIR 10
Match: AT1G76065.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-27
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 0

Query: 2  VVSLDLHEFILRARVLKLFRQALRTARKAPVHAREELRHTIRQEMENNRSCNDKQKVRYL 61
          +V LDL  FILRARVLKL+RQAL+ A +APVH R EL+ T+RQEME NR CNDKQK+RYL
Sbjct: 1  MVQLDLQSFILRARVLKLYRQALKIAHRAPVHVRGELKQTVRQEMEKNRDCNDKQKIRYL 60

Query: 62 ISEGIESLKRLDEMLDMQGH 82
          ISEG+E +K LDEMLDMQGH
Sbjct: 61 ISEGLERIKGLDEMLDMQGH 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022140612.13.97e-47100.00uncharacterized protein LOC111011218 [Momordica charantia] >XP_022140617.1 uncha... [more]
XP_023535371.15.04e-4187.80uncharacterized protein LOC111796833 [Cucurbita pepo subsp. pepo] >XP_023535372.... [more]
KAG6591251.11.45e-4086.59LYR motif-containing protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022936861.12.05e-4086.59uncharacterized protein LOC111443321 [Cucurbita moschata] >XP_022936862.1 unchar... [more]
XP_038877724.12.18e-4084.15uncharacterized protein LOC120069952 [Benincasa hispida] >XP_038877725.1 unchara... [more]
Match NameE-valueIdentityDescription
A0A6J1CHJ11.92e-47100.00uncharacterized protein LOC111011218 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1F8N39.94e-4186.59uncharacterized protein LOC111443321 OS=Cucurbita moschata OX=3662 GN=LOC1114433... [more]
A0A6J1IFA54.05e-4085.37uncharacterized protein LOC111476418 OS=Cucurbita maxima OX=3661 GN=LOC111476418... [more]
A0A6J1FM542.67e-3883.95uncharacterized protein LOC111446466 OS=Cucurbita moschata OX=3662 GN=LOC1114464... [more]
A0A6J1IY121.04e-3581.48uncharacterized protein LOC111480962 OS=Cucurbita maxima OX=3661 GN=LOC111480962... [more]
Match NameE-valueIdentityDescription
AT1G76065.11.8e-2773.75LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 35..55
NoneNo IPR availablePANTHERPTHR13675:SF0LYR MOTIF-CONTAINING PROTEIN 2coord: 1..81
NoneNo IPR availablePANTHERPTHR13675LYR MOTIF-CONTAINING PROTEIN 2coord: 1..81
NoneNo IPR availableCDDcd20262Complex1_LYR_LYRM2coord: 11..72
e-value: 8.76265E-16
score: 62.9386
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 15..70
e-value: 3.5E-16
score: 59.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g0081.1MC11g0081.1mRNA