MC10g_new0345 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g_new0345
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC10: 16798177 .. 16799404 (-)
RNA-Seq ExpressionMC10g_new0345
SyntenyMC10g_new0345
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAGGTGGAATGAGAATCTTGTCCGTGATAACTTTTGTGAGGAGGAAGCTGAAATGATTCTTAAAATTCCTTTACCGCGACAGAGTCAAGAAGATGAAATTATATGGAATAAAGACAAAAGAGAGTTTTTCACGGTTAAAAGCGCCTATCACTTGGGGATGGAATTGGAGCGAGCAAAAGAATGTTCTACTTCTAATGGCGAAAATCAAAAGTTGTGGTGGAAGAAGTTCTGGAAAACTAACGTGTCCCCATAGATTAAAATCTACTGTTGGAAGAGTTATAATGATATTCTTCCTTCTAAAATTAATCTGGTGAAAAAAGGAATTATTATTGATCAGTTTTGTCCTTTTTGCAGGAAAAAAGAAGAGACTACTCAACATATCCTATGGGAATGTAAGGTAATTAAAGATATATGGATAAATTGCACCCCTGTTGAAGCAAATTTTTTCTACATTGACAGGACAAACTGGACTACAAAAGAGTATTGGGAGTGGCTAATGGATAAGGCGAGTGAAGAAGAACGTAGAAGAAGCATGATAATAGCTTGGCAGATTTGGGAAATGCAGAACAAATCAATTTTCAAAGGTGTTCATTCAGAAACTAGAGACATTCAATTGGCGATTGACAGATACATAATCAACAGTGCAGGTCGAGACACAAATCTAAAAGAAAAGTCGACAAACAAGGACTTGCACCTGATAAGGCGAATTGGAGATAATACAGGTGCTTGATGGAAACATCCCACGTCAAATTCATGGAAGTTAAATACGGATGCAGCATGGCGAGCTGATACAAACATCAGCGGGATTGGCTGTATTTTAAGAGACAAGAAGGGAGAAGTCATCAAAGCAGGCTGTAGAATTATAAGAGCGGGAAGAAATATTACTTACCTAGAGGTGATGGCTATTTGCGAGGGATTGCGTGCGATTCGACAAGAACACTGTCAACCAATTCACTTGGAATCTGACTCCCTCAATGCCATTCATCTACTTCACAGACAGTGTCAAGATCAAACTGAAATTATTTGGCTTTTAGAAGAAATTCGGCAGATGATGGAAGATATGGAAATAGTTTCAATGAGACATATCAGTCGAGAGGCAAATAAGGTGGCCCATGACTTAGCCAGACGAACGATGGAAAACGATTTGAGGGAAGAGTGGAGTTGTCAAAGTCTCTAGTGGCTGGACAATTTAGTTTTTCCGAAATTTGTTTTATGTTAAGTTGTTT

mRNA sequence

ATGGATAAGGCGAGTGAAGAAGAACGTAGAAGAAGCATGATAATAGCTTGGCAGATTTGGGAAATGCAGAACAAATCAATTTTCAAAGGTGTTCATTCAGAAACTAGAGACATTCAATTGGCGATTGACAGATACATAATCAACAGTGCAGGTCGAGACACAAATCTAAAAGAAAAGTCGACAAACAAGGACTTGCACCTGATAAGGCGAATTGGAGATAATACAGGTGCTTGA

Coding sequence (CDS)

ATGGATAAGGCGAGTGAAGAAGAACGTAGAAGAAGCATGATAATAGCTTGGCAGATTTGGGAAATGCAGAACAAATCAATTTTCAAAGGTGTTCATTCAGAAACTAGAGACATTCAATTGGCGATTGACAGATACATAATCAACAGTGCAGGTCGAGACACAAATCTAAAAGAAAAGTCGACAAACAAGGACTTGCACCTGATAAGGCGAATTGGAGATAATACAGGTGCTTGA

Protein sequence

MDKASEEERRRSMIIAWQIWEMQNKSIFKGVHSETRDIQLAIDRYIINSAGRDTNLKEKSTNKDLHLIRRIGDNTGA
Homology
[Close]
BLAST of MC10g_new0345 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 147 bits (372), Expect = 1.42e-42
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MDKASEEERRRSMIIAWQIWEMQNKSIFKGVHSETRDIQLAIDRYIINSAGRDTNLKEKS 60
          MDKA EEERRRSMIIAWQIWEM+NKSIFKGVHSETRDIQL IDRYIINSAGRDTNLK KS
Sbjct: 1  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKS 60

Query: 61 TNKDLHLIRRIGDNTGA 77
           NKDLHLIRRIGDNTGA
Sbjct: 61 ANKDLHLIRRIGDNTGA 77

[Close]
BLAST of MC10g_new0345 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 144 bits (363), Expect = 2.62e-41
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MDKASEEERRRSMIIAWQIWEMQNKSIFKGVHSETRDIQLAIDRYIINSAGRDTNLKEKS 60
          MDKA EEERRRSMIIAWQIWEM+NKSIFKGVH ETRDIQLAIDRYIINSAGR+TNLK KS
Sbjct: 1  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKS 60

Query: 61 TNKDLHLIRRIGDNTGA 77
          TNKDLHLIRRI DNTGA
Sbjct: 61 TNKDLHLIRRIEDNTGA 77

[Close]
BLAST of MC10g_new0345 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 129 bits (324), Expect = 2.16e-34
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 0 

Query: 1   MDKASEEERRRSMIIAWQIWEMQNKSIFKGVHSETRDIQLAIDRYIINSAGRDTNLKEKS 60
           MDKA EEERRRSMIIA QIWEM+NKSIFKGVHSETRDIQLAIDRYIINSAG+DTNLK KS
Sbjct: 144 MDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDTNLKRKS 203

Query: 61  TNKDLHLIRRIGDNTGA 77
             KD H IRRIGDNT A
Sbjct: 204 --KDFHPIRRIGDNTRA 218

[Close]
BLAST of MC10g_new0345 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 129 bits (324), Expect = 4.33e-34
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 0 

Query: 1   MDKASEEERRRSMIIAWQIWEMQNKSIFKGVHSETRDIQLAIDRYIINSAGRDTNLKEKS 60
           MDKA EEERRRSMIIA QIWEM+NKSIFKGVHSETRDIQLAIDRYIINSAG+DTNLK KS
Sbjct: 179 MDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDTNLKRKS 238

Query: 61  TNKDLHLIRRIGDNTGA 77
             KD H IRRIGDNT A
Sbjct: 239 --KDFHPIRRIGDNTRA 253

[Close]
BLAST of MC10g_new0345 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 147 bits (372), Expect = 6.89e-43
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MDKASEEERRRSMIIAWQIWEMQNKSIFKGVHSETRDIQLAIDRYIINSAGRDTNLKEKS 60
          MDKA EEERRRSMIIAWQIWEM+NKSIFKGVHSETRDIQL IDRYIINSAGRDTNLK KS
Sbjct: 1  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHSETRDIQLVIDRYIINSAGRDTNLKGKS 60

Query: 61 TNKDLHLIRRIGDNTGA 77
           NKDLHLIRRIGDNTGA
Sbjct: 61 ANKDLHLIRRIGDNTGA 77

[Close]
BLAST of MC10g_new0345 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 1.27e-41
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0 

Query: 1  MDKASEEERRRSMIIAWQIWEMQNKSIFKGVHSETRDIQLAIDRYIINSAGRDTNLKEKS 60
          MDKA EEERRRSMIIAWQIWEM+NKSIFKGVH ETRDIQLAIDRYIINSAGR+TNLK KS
Sbjct: 1  MDKAGEEERRRSMIIAWQIWEMRNKSIFKGVHPETRDIQLAIDRYIINSAGRNTNLKGKS 60

Query: 61 TNKDLHLIRRIGDNTGA 77
          TNKDLHLIRRI DNTGA
Sbjct: 61 TNKDLHLIRRIEDNTGA 77

[Close]
BLAST of MC10g_new0345 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 1.05e-34
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 0 

Query: 1   MDKASEEERRRSMIIAWQIWEMQNKSIFKGVHSETRDIQLAIDRYIINSAGRDTNLKEKS 60
           MDKA EEERRRSMIIA QIWEM+NKSIFKGVHSETRDIQLAIDRYIINSAG+DTNLK KS
Sbjct: 144 MDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDTNLKRKS 203

Query: 61  TNKDLHLIRRIGDNTGA 77
             KD H IRRIGDNT A
Sbjct: 204 --KDFHPIRRIGDNTRA 218

[Close]
BLAST of MC10g_new0345 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 2.10e-34
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 0 

Query: 1   MDKASEEERRRSMIIAWQIWEMQNKSIFKGVHSETRDIQLAIDRYIINSAGRDTNLKEKS 60
           MDKA EEERRRSMIIA QIWEM+NKSIFKGVHSETRDIQLAIDRYIINSAG+DTNLK KS
Sbjct: 179 MDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDTNLKRKS 238

Query: 61  TNKDLHLIRRIGDNTGA 77
             KD H IRRIGDNT A
Sbjct: 239 --KDFHPIRRIGDNTRA 253

The following BLAST results are available for this feature:
BLAST of MC10g_new0345 vs.
Match NameE-valueIdentityDescription
BLAST of MC10g_new0345 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156777.11.42e-4293.51uncharacterized protein LOC111023608 [Momordica charantia][more]
XP_022143535.12.62e-4192.21uncharacterized protein LOC111013412 [Momordica charantia][more]
XP_022154991.12.16e-3487.01uncharacterized protein LOC111022134 isoform X2 [Momordica charantia][more]
XP_022154990.14.33e-3487.01uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
BLAST of MC10g_new0345 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DSV16.89e-4393.51uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CP261.27e-4192.21uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DQC91.05e-3487.01uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DL642.10e-3487.01uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
BLAST of MC10g_new0345 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g_new0345.1MC10g_new0345.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity