MC10g_new0259 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g_new0259
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRibonuclease H
LocationMC10: 11806359 .. 11807231 (-)
RNA-Seq ExpressionMC10g_new0259
SyntenyMC10g_new0259
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGGGGTTGAAAATCGTATTGCCGCATGGAGGACAGAAAAAGGTCCAACTTTGGAGGTTTTCCCTTTGTTGGCCGACCTGAAGTGGTCGACTTGAAGATCTTCCCTTTAGTGGCCGACCTGAAGATCTTCCTTTTGGTGGCCGACCTGAAGTGGCAGACCTAAAAAGCTCCACTGAGGGCAGACCTGAAGAGCTCCATTGAGGGCCGACCTGAAGAGCTCCCCTAAGGGCCGACCTGAAGGCTTTGCCTGATGGCCGACCTGAAAAGCTTCCTTGAAGGCCAACCTGAAGGCCTTGCCTAATGGCCGACCTGAGGCCTTCCCTAAAGGCTGATCTGAAGGTCTTCCCTGAAGATCATCCAAGGGAGGAACGACCTTCCATACTTAGTCAAATTCCAAATGACAAGAGTATGAGCTGGAATAGCTACTCCCGACAGGCCGACCTTGGTCTCGACATGCTCAACTGCTGGTCGGATTCCTTGTCGGGTACCTCAATCTATAAATAGGGCACTTCACTCTTCAGTCAGGTATCGTATTCTAGCTCGGTCTCCACACTAAGGTCGGACTCAAAACTGACTTGAGGGTCGGAGTATTTGTTCCCTTGTGCAGGTCTTTCTTCGCCAAGTGACCTTTCAACTCATTCTTGACACCTGCTCATCCGAGTCAGCCGACCTTGACCCTTCAAGTTGGTCATCCCTTTCCAAGGATACGTTAGCTCTTCCCACTGTCATACTTGAAGCAAGTTAAGCTCTTCCCGCGATCATACCTAGAGCATGTCGAGCTCTTCCGCATGGCCGTCCTTGACCAGGTCATACCATGTCACATTTTTTGCATAAACAAAATTCAAGCTTTATCCCATTCAAGTTAAAATTGGT

mRNA sequence

ATGGCCGACCTGAGGCCTTCCCTAAAGGCTGATCTGAAGGTCTTCCCTGAAGATCATCCAAGGGAGGAACGACCTTCCATACTTAGTCAAATTCCAAATGACAAGAGTATGAGCTGGAATAGCTACTCCCGACAGGCCGACCTTGGTCTCGACATGCTCAACTGCTGGTCGGATTCCTTGTCGGGTACCTCAATCTATAAATAG

Coding sequence (CDS)

ATGGCCGACCTGAGGCCTTCCCTAAAGGCTGATCTGAAGGTCTTCCCTGAAGATCATCCAAGGGAGGAACGACCTTCCATACTTAGTCAAATTCCAAATGACAAGAGTATGAGCTGGAATAGCTACTCCCGACAGGCCGACCTTGGTCTCGACATGCTCAACTGCTGGTCGGATTCCTTGTCGGGTACCTCAATCTATAAATAG

Protein sequence

MADLRPSLKADLKVFPEDHPREERPSILSQIPNDKSMSWNSYSRQADLGLDMLNCWSDSLSGTSIYK
Homology
[Close]
BLAST of MC10g_new0259 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 114 bits (285), Expect = 1.55e-27
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1  MADLRPSLKADLKVFPEDHPREERPSILSQIPNDKSMSWNSYSRQADLGLDMLNCWSDSL 60
          MADLRPSLKADLKVFPEDH  EERPSILSQ+P+DKSM+WNSYSRQADLG DMLN WSDSL
Sbjct: 1  MADLRPSLKADLKVFPEDHSWEERPSILSQVPDDKSMNWNSYSRQADLGPDMLNRWSDSL 60

Query: 61 SG 62
          SG
Sbjct: 61 SG 62

[Close]
BLAST of MC10g_new0259 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 7.51e-28
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1  MADLRPSLKADLKVFPEDHPREERPSILSQIPNDKSMSWNSYSRQADLGLDMLNCWSDSL 60
          MADLRPSLKADLKVFPEDH  EERPSILSQ+P+DKSM+WNSYSRQADLG DMLN WSDSL
Sbjct: 1  MADLRPSLKADLKVFPEDHSWEERPSILSQVPDDKSMNWNSYSRQADLGPDMLNRWSDSL 60

Query: 61 SG 62
          SG
Sbjct: 61 SG 62

The following BLAST results are available for this feature:
BLAST of MC10g_new0259 vs.
Match NameE-valueIdentityDescription
BLAST of MC10g_new0259 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143495.11.55e-2788.71LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia][more]
BLAST of MC10g_new0259 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CNY77.51e-2888.71Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1[more]
BLAST of MC10g_new0259 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g_new0259.1MC10g_new0259.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity