MC10g_new0159 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g_new0159
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein CUP-SHAPED COTYLEDON 2-like
Location	MC10: 7950273 .. 7950951 (+)
RNA-Seq Expression	MC10g_new0159
Synteny	MC10g_new0159

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGATATTTGGGAAGCAGGATGAATGGGTGATATCCAGAGTTTTCAAGAAAAGCGGCTCCGGCGCCGGTGCCGCCCTGTGCGGCGGAGCAATGAAGAAGTCTCAGCTGAACCCTGAACCGAGCTCGCCTTCCTCGGTGTCTCTGCCCCCACTTCTCGACTCATCTCCCTACCCCTCCGCCGCCTTCACTGAACGTGACGGCTGCTCTCTCGACGACCCGAGAGAGCACGAGCTGCACGTGACCTGTTTCTCCACCAACAACAACCTTGCCGGCGCCGGCTTCCCCTCCGGCGGCGGCCTCGATTTCTCCACCTCCGGCTTCCCGAGCCTCCAGTCGCCGTTCTTCTCCACCGTGGCTCCGGCGCCGCTGCAGCCGCTGACGCATCTCCTCGCCGGCGGCACCGACTTTGATGGGTGCGGCGGAGGTACGGCGGCGGAGGAGTCGAGACCAATCGGTTTCGCTGACATGGCTGATACGTGGACCTTCTAAAAGTCAAACCTCTCTCTCTCTCTCGCTAGAATCTTGAGATTTTCATTAATAAATGATTAGCGAAGCAATTTGAATGGTTAAAATTTAGTACAAGTTTGTTGTTCTTCACGTTTTAAAACTTGTATCAGATTAGAAAAGAAAAATAGGCCACTGATCTTTGTATCATACTTTTTCGTTAAAAATATATACT

mRNA sequence

ATGAAGAAGTCTCAGCTGAACCCTGAACCGAGCTCGCCTTCCTCGGTGTCTCTGCCCCCACTTCTCGACTCATCTCCCTACCCCTCCGCCGCCTTCACTGAACGTGACGGCTGCTCTCTCGACGACCCGAGAGAGCACGAGCTGCACGTGACCTGTTTCTCCACCAACAACAACCTTGCCGGCGCCGGCTTCCCCTCCGGCGGCGGCCTCGATTTCTCCACCTCCGGCTTCCCGAGCCTCCAGTCGCCGTTCTTCTCCACCGTGGCTCCGGCGCCGCTGCAGCCGCTGACGCATCTCCTCGCCGGCGGCACCGACTTTGATGGGTGCGGCGGAGGTACGGCGGCGGAGGAGTCGAGACCAATCGGTTTCGCTGACATGGCTGATACGTGGACCTTCTAA

Coding sequence (CDS)

ATGAAGAAGTCTCAGCTGAACCCTGAACCGAGCTCGCCTTCCTCGGTGTCTCTGCCCCCACTTCTCGACTCATCTCCCTACCCCTCCGCCGCCTTCACTGAACGTGACGGCTGCTCTCTCGACGACCCGAGAGAGCACGAGCTGCACGTGACCTGTTTCTCCACCAACAACAACCTTGCCGGCGCCGGCTTCCCCTCCGGCGGCGGCCTCGATTTCTCCACCTCCGGCTTCCCGAGCCTCCAGTCGCCGTTCTTCTCCACCGTGGCTCCGGCGCCGCTGCAGCCGCTGACGCATCTCCTCGCCGGCGGCACCGACTTTGATGGGTGCGGCGGAGGTACGGCGGCGGAGGAGTCGAGACCAATCGGTTTCGCTGACATGGCTGATACGTGGACCTTCTAA

Protein sequence

MKKSQLNPEPSSPSSVSLPPLLDSSPYPSAAFTERDGCSLDDPREHELHVTCFSTNNNLAGAGFPSGGGLDFSTSGFPSLQSPFFSTVAPAPLQPLTHLLAGGTDFDGCGGGTAAEESRPIGFADMADTWTF

Homology

[Close]

BLAST of MC10g_new0159 vs. NCBI nr
Match: XP_022142777.1 (protein CUP-SHAPED COTYLEDON 2-like [Momordica charantia])

HSP 1 Score: 270 bits (691), Expect = 7.86e-89
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MKKSQLNPEPSSPSSVSLPPLLDSSPYPSAAFTERDGCSLDDPREHELHVTCFSTNNNLA 60
           MKKSQLNPEPSSPSSVSLPPLLDSSPYPSAAFTERDGCSLDDPREHELHVTCFSTNNNLA
Sbjct: 182 MKKSQLNPEPSSPSSVSLPPLLDSSPYPSAAFTERDGCSLDDPREHELHVTCFSTNNNLA 241

Query: 61  GAGFPSGGGLDFSTSGFPSLQSPFFSTVAPAPLQPLTHLLAGGTDFDGCGGGTAAEESRP 120
           GAGFPSGGGLDFSTSGFPSLQSPFFSTVAPAPLQPLTHLLAGGTDFDGCGGGTAAEESRP
Sbjct: 242 GAGFPSGGGLDFSTSGFPSLQSPFFSTVAPAPLQPLTHLLAGGTDFDGCGGGTAAEESRP 301

Query: 121 IGFADMADTWTF 132
           IGFADMADTWTF
Sbjct: 302 IGFADMADTWTF 313

[Close]

BLAST of MC10g_new0159 vs. NCBI nr
Match: XP_023543274.1 (protein CUP-SHAPED COTYLEDON 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148 bits (373), Expect = 1.03e-40
Identity = 87/150 (58.00%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 1   MKKSQLNPEPSSPSSVSLPPLLDSSPYPSAA---------FTERDGCSLDDPREHELHVT 60
           MKK++ +PEP+SPSSVSLPPLLDSSPY SAA         F  R+G SLDD REHELHVT
Sbjct: 177 MKKTRRDPEPTSPSSVSLPPLLDSSPYLSAAADTSISTSAFANREGSSLDDQREHELHVT 236

Query: 61  CFSTNN-NLAGAGFPSGGGLDFSTSGFPSL-------QSPFFSTVAPAPLQPLTHLLAGG 120
           CFSTNN +   A FP+GGG + S S FP+L       Q+PFFS V+P    PL HLL+G 
Sbjct: 237 CFSTNNLSYPAASFPAGGGPNLSVSAFPNLRSIQENLQAPFFSPVSP----PLVHLLSGA 296

Query: 121 TDFDGCGGGTAAEESRPIGFADM-ADTWTF 132
            D DGCGG  + E+SR IG AD+ A  WTF
Sbjct: 297 ADVDGCGGAPSPEDSRTIGSADLGAYMWTF 322

[Close]

BLAST of MC10g_new0159 vs. NCBI nr
Match: KAG6600382.1 (Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147 bits (370), Expect = 2.57e-40
Identity = 85/150 (56.67%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 1   MKKSQLNPEPSSPSSVSLPPLLDSSPY---------PSAAFTERDGCSLDDPREHELHVT 60
           MKK++ +PEP+SPSSVSLPPLLDSSPY          ++AF  RDG SLDD REHELHVT
Sbjct: 172 MKKTRRDPEPTSPSSVSLPPLLDSSPYLYAAADTSISTSAFANRDGSSLDDQREHELHVT 231

Query: 61  CFSTNN-NLAGAGFPSGGGLDFSTSGFPSL-------QSPFFSTVAPAPLQPLTHLLAGG 120
           CFSTNN +   A FP+GGG + S S FP+L       Q+PFFS V+P    PL HLL+G 
Sbjct: 232 CFSTNNLSYPAASFPAGGGHNLSVSAFPNLRSIQENLQAPFFSPVSP----PLVHLLSGA 291

Query: 121 TDFDGCGGGTAAEESRPIGFADM-ADTWTF 132
            D DGCGG  + E+SR +G AD+ A  WTF
Sbjct: 292 ADVDGCGGAPSPEDSRTMGSADLGAYMWTF 317

[Close]

BLAST of MC10g_new0159 vs. NCBI nr
Match: KAG7031044.1 (Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147 bits (370), Expect = 2.89e-40
Identity = 85/150 (56.67%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 1   MKKSQLNPEPSSPSSVSLPPLLDSSPY---------PSAAFTERDGCSLDDPREHELHVT 60
           MKK++ +PEP+SPSSVSLPPLLDSSPY          ++AF  RDG SLDD REHELHVT
Sbjct: 177 MKKTRRDPEPTSPSSVSLPPLLDSSPYLYAAADTSISTSAFANRDGSSLDDQREHELHVT 236

Query: 61  CFSTNN-NLAGAGFPSGGGLDFSTSGFPSL-------QSPFFSTVAPAPLQPLTHLLAGG 120
           CFSTNN +   A FP+GGG + S S FP+L       Q+PFFS V+P    PL HLL+G 
Sbjct: 237 CFSTNNLSYPAASFPAGGGHNLSVSAFPNLRSIQENLQAPFFSPVSP----PLVHLLSGA 296

Query: 121 TDFDGCGGGTAAEESRPIGFADM-ADTWTF 132
            D DGCGG  + E+SR +G AD+ A  WTF
Sbjct: 297 ADVDGCGGAPSPEDSRTMGSADLGAYMWTF 322

[Close]

BLAST of MC10g_new0159 vs. NCBI nr
Match: XP_022942010.1 (protein CUP-SHAPED COTYLEDON 2-like [Cucurbita moschata])

HSP 1 Score: 146 bits (369), Expect = 4.08e-40
Identity = 86/150 (57.33%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 1   MKKSQLNPEPSSPSSVSLPPLLDSSPYPSAA---------FTERDGCSLDDPREHELHVT 60
           MKK++ +PEP+SPSSVSLPPLLDSSPY SAA         F  RDG SLDD REH+LHVT
Sbjct: 177 MKKTRGDPEPTSPSSVSLPPLLDSSPYLSAAADTSISTSAFANRDGSSLDDQREHQLHVT 236

Query: 61  CFSTNN-NLAGAGFPSGGGLDFSTSGFPSL-------QSPFFSTVAPAPLQPLTHLLAGG 120
           CFSTNN +   A FP+GGG + S S FP+L       Q+PFFS V+P    PL HLL+G 
Sbjct: 237 CFSTNNLSYPAASFPAGGGHNLSVSAFPNLRSIQENLQAPFFSPVSP----PLVHLLSGA 296

Query: 121 TDFDGCGGGTAAEESRPIGFADM-ADTWTF 132
            D DGCGG  + E+SR +G AD+ A  WTF
Sbjct: 297 ADVDGCGGAPSPEDSRTMGSADLGAYMWTF 322

[Close]

BLAST of MC10g_new0159 vs. ExPASy TrEMBL
Match: A0A6J1CNU6 (protein CUP-SHAPED COTYLEDON 2-like OS=Momordica charantia OX=3673 GN=LOC111012816 PE=4 SV=1)

HSP 1 Score: 270 bits (691), Expect = 3.81e-89
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MKKSQLNPEPSSPSSVSLPPLLDSSPYPSAAFTERDGCSLDDPREHELHVTCFSTNNNLA 60
           MKKSQLNPEPSSPSSVSLPPLLDSSPYPSAAFTERDGCSLDDPREHELHVTCFSTNNNLA
Sbjct: 182 MKKSQLNPEPSSPSSVSLPPLLDSSPYPSAAFTERDGCSLDDPREHELHVTCFSTNNNLA 241

Query: 61  GAGFPSGGGLDFSTSGFPSLQSPFFSTVAPAPLQPLTHLLAGGTDFDGCGGGTAAEESRP 120
           GAGFPSGGGLDFSTSGFPSLQSPFFSTVAPAPLQPLTHLLAGGTDFDGCGGGTAAEESRP
Sbjct: 242 GAGFPSGGGLDFSTSGFPSLQSPFFSTVAPAPLQPLTHLLAGGTDFDGCGGGTAAEESRP 301

Query: 121 IGFADMADTWTF 132
           IGFADMADTWTF
Sbjct: 302 IGFADMADTWTF 313

[Close]

BLAST of MC10g_new0159 vs. ExPASy TrEMBL
Match: A0A6J1FVE0 (protein CUP-SHAPED COTYLEDON 2-like OS=Cucurbita moschata OX=3662 GN=LOC111447202 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 1.97e-40
Identity = 86/150 (57.33%), Postives = 102/150 (68.00%), Query Frame = 0


Query: 1   MKKSQLNPEPSSPSSVSLPPLLDSSPYPSAA---------FTERDGCSLDDPREHELHVT 60
           MKK++ +PEP+SPSSVSLPPLLDSSPY SAA         F  RDG SLDD REH+LHVT
Sbjct: 177 MKKTRGDPEPTSPSSVSLPPLLDSSPYLSAAADTSISTSAFANRDGSSLDDQREHQLHVT 236

Query: 61  CFSTNN-NLAGAGFPSGGGLDFSTSGFPSL-------QSPFFSTVAPAPLQPLTHLLAGG 120
           CFSTNN +   A FP+GGG + S S FP+L       Q+PFFS V+P    PL HLL+G 
Sbjct: 237 CFSTNNLSYPAASFPAGGGHNLSVSAFPNLRSIQENLQAPFFSPVSP----PLVHLLSGA 296

Query: 121 TDFDGCGGGTAAEESRPIGFADM-ADTWTF 132
            D DGCGG  + E+SR +G AD+ A  WTF
Sbjct: 297 ADVDGCGGAPSPEDSRTMGSADLGAYMWTF 322

[Close]

BLAST of MC10g_new0159 vs. ExPASy TrEMBL
Match: A0A6J1E4T0 (protein CUP-SHAPED COTYLEDON 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430609 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 6.97e-28
Identity = 72/139 (51.80%), Postives = 83/139 (59.71%), Query Frame = 0


Query: 2   KKSQLNPEPSSPSSVSLPPLLDSSPYPSAAFTERDGCSLDDPREHELHVTCFSTNNNLAG 61
           +K++L+PEPSSPS VSLPPLLDSS                DP EHELHVTCFSTNN    
Sbjct: 182 RKTRLDPEPSSPSLVSLPPLLDSSA---------------DPSEHELHVTCFSTNN---- 241

Query: 62  AGFPSGGGLDFSTSGFPSL-------QSPFFSTVAPAPLQPLTHLLAGGTDFDGCGGGTA 121
             +P+GGG D S S FP+L       Q+PFFS V P    PL HLL    +  GCG G A
Sbjct: 242 VNYPAGGGSDLSPSVFPNLLSFQENLQAPFFSPVGP----PLVHLLTDAAELVGCGDGPA 297

Query: 122 AEESRPIGFADMAD-TWTF 132
            E+SR +G ADMA   WTF
Sbjct: 302 PEDSRLVGSADMATYMWTF 297

[Close]

BLAST of MC10g_new0159 vs. ExPASy TrEMBL
Match: A0A6J1JAG2 (protein CUP-SHAPED COTYLEDON 2-like OS=Cucurbita maxima OX=3661 GN=LOC111482723 PE=4 SV=1)

HSP 1 Score: 110 bits (275), Expect = 1.06e-26
Identity = 72/139 (51.80%), Postives = 82/139 (58.99%), Query Frame = 0


Query: 2   KKSQLNPEPSSPSSVSLPPLLDSSPYPSAAFTERDGCSLDDPREHELHVTCFSTNNNLAG 61
           KK +L+PEPSSPSSVSLPP LDSS                DP E+ELHVTCFSTNN    
Sbjct: 182 KKIRLDPEPSSPSSVSLPPRLDSSA---------------DPSENELHVTCFSTNN---- 241

Query: 62  AGFPSGGGLDFSTSGFPSL-------QSPFFSTVAPAPLQPLTHLLAGGTDFDGCGGGTA 121
             +P+GGG D S S FP+L       Q+PFFS V P    PL HLL    +  GCG G A
Sbjct: 242 VNYPAGGGSDLSPSVFPNLLSFQENLQAPFFSPVGP----PLVHLLTDAAELVGCGDGPA 297

Query: 122 AEESRPIGFADMAD-TWTF 132
            E+SR +G ADMA   WTF
Sbjct: 302 PEDSRLVGSADMAAYMWTF 297

[Close]

BLAST of MC10g_new0159 vs. ExPASy TrEMBL
Match: A0A5A7UVV9 (Protein CUP-SHAPED COTYLEDON 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001020 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.23e-23
Identity = 63/127 (49.61%), Postives = 74/127 (58.27%), Query Frame = 0


Query: 2   KKSQLNPEPSSPSSVSLPPLLDSSPYPSAAFTERDGCSL----DDPREHELHVTCFSTNN 61
           K ++ NPEPSSPSSVSLPPLLDSSPY SAA       +     DD REHELHVTCFSTNN
Sbjct: 42  KTARPNPEPSSPSSVSLPPLLDSSPYTSAAADATVSSAAYADGDDTREHELHVTCFSTNN 101

Query: 62  NLAGAGFPSGGGLDF--STSGFPSLQSPFFSTVAPAPLQP-LTHLLAGGTDFDGCGGGTA 121
                       L++  S S FPS Q    +    +P+ P L HL+AG  + DGCGGG  
Sbjct: 102 ------------LNYCSSASAFPSFQENLQAPFLISPVGPSLVHLVAGAANLDGCGGGPT 156

The following BLAST results are available for this feature:

BLAST of MC10g_new0159 vs.


Match Name	E-value	Identity	Description

BLAST of MC10g_new0159 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142777.1	7.86e-89	100.00	protein CUP-SHAPED COTYLEDON 2-like [Momordica charantia]	[more]
XP_023543274.1	1.03e-40	58.00	protein CUP-SHAPED COTYLEDON 2-like [Cucurbita pepo subsp. pepo]	[more]
KAG6600382.1	2.57e-40	56.67	Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7031044.1	2.89e-40	56.67	Protein CUP-SHAPED COTYLEDON 2, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_022942010.1	4.08e-40	57.33	protein CUP-SHAPED COTYLEDON 2-like [Cucurbita moschata]	[more]

BLAST of MC10g_new0159 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNU6	3.81e-89	100.00	protein CUP-SHAPED COTYLEDON 2-like OS=Momordica charantia OX=3673 GN=LOC1110128...	[more]
A0A6J1FVE0	1.97e-40	57.33	protein CUP-SHAPED COTYLEDON 2-like OS=Cucurbita moschata OX=3662 GN=LOC11144720...	[more]
A0A6J1E4T0	6.97e-28	51.80	protein CUP-SHAPED COTYLEDON 2-like OS=Cucurbita moschata OX=3662 GN=LOC11143060...	[more]
A0A6J1JAG2	1.06e-26	51.80	protein CUP-SHAPED COTYLEDON 2-like OS=Cucurbita maxima OX=3661 GN=LOC111482723 ...	[more]
A0A5A7UVV9	3.23e-23	49.61	Protein CUP-SHAPED COTYLEDON 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of MC10g_new0159 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g_new0159.1	MC10g_new0159.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding