MC10g_new0101 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g_new0101
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description40S ribosomal protein S16-like
LocationMC10: 3416854 .. 3420010 (-)
RNA-Seq ExpressionMC10g_new0101
SyntenyMC10g_new0101
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAAGTATAGTCTCAACGATAATTGACATCTATCCCTGACCAAGAAATCATGAGTTCAAAACTCCCCCGAATGTTGTGCTTACAAAAAATTGCAAAACCCTAAAAATATTGTAATAGTATGTGTTTTGTATTTAGCTACAAATTGAGGGTATTTTTGACAATTGTAAAACCCTAAAAATTAAGAGAATCATATAAATACTTTCTGATTCACCCATTAAGCTTTCTTCTCGAATACCTAACAATGGCGGCTCCAATCGAATCTGTGCAATGCTTCGGCCGGAAGAAGACGGCGGTTGCCGTGACATACTGCAAGCGCGGCCGGGGCTTGATTAAGATCAATGGCTGCCCAATCGAGCTCATCGAGCCAGAGATCTTGCGATTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGAGTCGACATGCGCATCAGAGTGAAAGGCGGAGGCCACACCTCACAGATCTACGCCATCCGCCAGAGCATCGCCAAGGCGCTAGTCGCATTCTACCAGAAGTATGTCGACGAGCAGAGCAAGAAGGAGATCAAGGACATTCTGGTCCGCTACGACCGGACTTTGCTCGTTGCCGATCCGAGGCGCTGTGAGCCGAAGAAGTTCGGTGGTCGTGGAGCTCGTGCAAGATTTCAGAAATCTTATCGTTGATCAGAGAGTTTTAGGCATCTATAGCGGAGAGTTGCCGCTTGTTGGTAATGGTTATTTTTGGGTTCTGAATTCAAATTACCTGCGGGGACTTGAAATTTTTTATCTGTTTATGTTTTGTAGTATAAGAATTTTTTACTTGAGACTTGAGTTTCTGATTACTGAGATAATTGCAATGAAATGCTTTCTTGAAACATCAGAGTTTATATTCCAATTGTTTCTATTTCTGTTCCTGTATAATAGGGTGAGAAATCAAGCCAATAGAACACCCCTAATTCCTCCCCTGCATCTTTTGTAACATTAGAGCTACTTTCCTTGGACTACACATTTCAATTTCCATCCTAGAATCTTCAATGTGAGCAAAAATCCCTACTATAATCTTGTACTTCCCAAGTGTATAGAAAGAGTTGTGTAACTGTTAATATTTTCTACTTTTGAGTTCTTGGTACTTAGGAACCACCTATCATCCTTCCATCTTGAATCACAAACTTGAAGTAGTGGCTGTTCAATTTCATCCTCTCTTTCAGAAACCCCACATAACTGATATAAATTCTAAATGCTCATAATTCTTGTCAAAGAGTTGATCTTACTATTACAGCTAAGCATCCTCTACCCTAATTTTTTGGTCAACTTGTAGTATAAGAGAAGTGCTTCTTCGGATGTTACTTTTTTTCTAGAGTAACAAGGCTCCACCGGGACCTGCCATGTACGGAGTGGGGATTCCCCATTTTGGGCGGGTTGGGGATGGACGAATCCCCAGCCTCTATCCCTGCCTTGTGTCGCCCCGATACACCCCTACTTCAAGTAGTTCATGAGGAGCGCTTCCTCTTTAAATATAGCATTACAATTGTAGTAGCGAGATTCAAGGGTATTGATACAACCTTTTAGGTTATGCATAGGTTGGCCATTATAAGCAATAGTTTGTTAGGACAAAGAACCTCATCCCTTTTTTTTTTTTTTGATAACTAGGAGTTGGAACTTTGCTCTCCTGTACCCAAGGGCACCTGTGCCTGCCCCGAGGTCCAGACCTAGGAGACATCAAGGATTTTTTGGTATTAAGTTCACTATAAGATTCGAACTTGAGACCTCTAAGCCAGTATGACCAAGAGACCCCAAATCTTTGTCGACTGGGCTGTCCCTTGAAGGCTATACCCCATCCATTCAATGTCAATGGATTGAAGATATTCTTGTTAAGCTATCAAGGAAATTTTGTTCTTATTTCTCTATGTAAAATTTCTTTTCATTGATGTAAGATTGTTCTCGTACAAGTCCCAGCACGAGAGATCAACCTAAAACCTTACTCAAATGATTTACATTTTGCTTTATGTTACCCCAATTATTGAATTTTACTCTCTAACTTGTGGCTTGTGACATAAGCGTTTGAGTATGATTGGATTTGATTTTCCCCAGCTAAGCTACACAAGAGCATTTTTGTTTGAACTAAAAATAAAGATTTGAGTGCAAGCTCAAGCCATTGTGTCTCTAAGATCCAAAGAAATAGAAGTCACCACGAAGGCTGGGATATTCTATTCTGATTCTAATATTTCGATTACAATGTCATTTATGCGATTGTGTTTCATGGGGTTTTTGATTTCTTCTACTGTATCGTGACAATGGATCTATAAATATAAGAAGGGAATGATAGGAGAAAATATTGTGAACTAATTAATGATTTACTATGTCAAAGTCAATGAGCATGAAAGTTAATGATTCATAATAAGAGAAATTAGGGGCGTAGAATAGTGAATAGATATGCAATACAATTGCAAGTTAAAGGGATTGGAACTTGATGATAATTATTAAAATTAGATAATTAGTCGAGGTAATTGATTAACTCAATCTAAATATATGGTCGGTAGCTTTATTGTGACTATTATATCGATTTAATTTTGCATTGCAATAGAAAAACATGATGTTGTTATCCAATCGGCAAGAAGCCATAAGTAGATTTTAATCATTTTCTTTTGGTTTTCTATATTTAAAATTTAAATTTGTGTTAGAGGATTTTTTCTTTTTGGGTAATCTTTTCTAAAGGCGTTTTTTATGTTTTGGTCAAATTTCTAATACCTGGTTTTTATTTTTTATTCCTATTTTTTAAGTTAAAAGGTTTCAATACTCACTCGGCTTCTTGCAATTTTTAAGCATGTTCTTTCCTGCATGTTTTACAGGAGGCGAATCGGGCGGTAGATGCACATTTGTAGCTCCATTGAATGGAAGCAAAACTTTCCCCCTGGACTTTTGCGAGTTGTTGAGGGGGAGTTTCATTCTTCTGTAGCCCCACTGTGGATGTTCCCCGTTAATAAAGCTTACTTCTTTATAAACAAAAAAAAATACTCTTCCACTAAGGTATGTCGTGGTGTCTTAATAGGATTTTTTATCTTATTTTACATACTAGTCTCCTTATACAAAAAAAAAATGTAAAATAGTTTTCTAATTTTAAAGGTAGCAATTAGTCAATCTCGACGTAACTCATTAATAAATAC

mRNA sequence

ATGGCGGCTCCAATCGAATCTGTGCAATGCTTCGGCCGGAAGAAGACGGCGGTTGCCGTGACATACTGCAAGCGCGGCCGGGGCTTGATTAAGATCAATGGCTGCCCAATCGAGCTCATCGAGCCAGAGATCTTGCGATTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGAGTCGACATGCGCATCAGAGTGAAAGGCGGAGGCCACACCTCACAGATCTACGCCATCCGCCAGAGCATCGCCAAGGCGCTAGTCGCATTCTACCAGAAGTATGTCGACGAGCAGAGCAAGAAGGAGATCAAGGACATTCTGGTCCGCTACGACCGGACTTTGCTCGTTGCCGATCCGAGGCGCTGTGAGCCGAAGAAGTTCGGTGGTCGTGGAGCTCGTGCAAGATTTCAGAAATCTTATCGTTGA

Coding sequence (CDS)

ATGGCGGCTCCAATCGAATCTGTGCAATGCTTCGGCCGGAAGAAGACGGCGGTTGCCGTGACATACTGCAAGCGCGGCCGGGGCTTGATTAAGATCAATGGCTGCCCAATCGAGCTCATCGAGCCAGAGATCTTGCGATTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGAGTCGACATGCGCATCAGAGTGAAAGGCGGAGGCCACACCTCACAGATCTACGCCATCCGCCAGAGCATCGCCAAGGCGCTAGTCGCATTCTACCAGAAGTATGTCGACGAGCAGAGCAAGAAGGAGATCAAGGACATTCTGGTCCGCTACGACCGGACTTTGCTCGTTGCCGATCCGAGGCGCTGTGAGCCGAAGAAGTTCGGTGGTCGTGGAGCTCGTGCAAGATTTCAGAAATCTTATCGTTGA

Protein sequence

MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR
Homology
BLAST of MC10g_new0101 vs. ExPASy Swiss-Prot
Match: P46293 (40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 6.9e-72
Identity = 134/140 (95.71%), Postives = 137/140 (97.86%), Query Frame = 0

Query: 5   IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHRFSGV 64
           IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIEL+EPEILRFKA EPILLLGR RF+GV
Sbjct: 6   IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGV 65

Query: 65  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 124
           DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRR
Sbjct: 66  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRR 125

Query: 125 CEPKKFGGRGARARFQKSYR 145
           CEPKKFGGRGARARFQKSYR
Sbjct: 126 CEPKKFGGRGARARFQKSYR 145

BLAST of MC10g_new0101 vs. ExPASy Swiss-Prot
Match: Q9SK22 (40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.3e-69
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 0

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

BLAST of MC10g_new0101 vs. ExPASy Swiss-Prot
Match: Q42340 (40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-68
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 0

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

BLAST of MC10g_new0101 vs. ExPASy Swiss-Prot
Match: O22647 (40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.6e-68
Identity = 127/145 (87.59%), Postives = 139/145 (95.86%), Query Frame = 0

Query: 1   MAAP-IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRH 60
           MA P  ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIEL++PEILR+KA+EPILLLGRH
Sbjct: 1   MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLV
Sbjct: 61  RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARARFQKSYR 145
           ADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145

BLAST of MC10g_new0101 vs. ExPASy Swiss-Prot
Match: Q9XEK7 (40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-65
Identity = 121/142 (85.21%), Postives = 137/142 (96.48%), Query Frame = 0

Query: 3   APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHRFS 62
           A +ESVQCFGRKKTAVAVTYC+RGRGLI++   PIEL+EPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 122
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 123 RRCEPKKFGGRGARARFQKSYR 145
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

BLAST of MC10g_new0101 vs. NCBI nr
Match: XP_022149351.1 (40S ribosomal protein S16-like [Momordica charantia])

HSP 1 Score: 291 bits (746), Expect = 1.86e-99
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

BLAST of MC10g_new0101 vs. NCBI nr
Match: XP_004136973.1 (40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protein S16 [Cucumis sativus] >XP_004149967.1 40S ribosomal protein S16 [Cucumis sativus] >XP_008454961.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456099.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456141.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_022136342.1 40S ribosomal protein S16 [Momordica charantia] >XP_022149129.1 40S ribosomal protein S16 [Momordica charantia] >XP_022927908.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943042.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943043.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022952362.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022972375.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_022983243.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_023535994.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_023553863.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_038877987.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038880326.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038886975.1 40S ribosomal protein S16 [Benincasa hispida] >KAA0031306.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAG6571970.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011649.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAA0037136.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAA0039084.1 40S ribosomal protein S16 [Cucumis melo var. makuwa])

HSP 1 Score: 291 bits (745), Expect = 2.65e-99
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

BLAST of MC10g_new0101 vs. NCBI nr
Match: XP_022989000.1 (40S ribosomal protein S16-like [Cucurbita maxima])

HSP 1 Score: 290 bits (742), Expect = 7.59e-99
Identity = 142/144 (98.61%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60
           MA+PIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MASPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

BLAST of MC10g_new0101 vs. NCBI nr
Match: XP_040987369.1 (40S ribosomal protein S16 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 290 bits (741), Expect = 1.08e-98
Identity = 141/144 (97.92%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60
           MAAP+ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

BLAST of MC10g_new0101 vs. NCBI nr
Match: KAE8645860.1 (hypothetical protein Csa_017052 [Cucumis sativus])

HSP 1 Score: 291 bits (745), Expect = 1.43e-98
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 170 DPRRCEPKKFGGRGARARFQKSYR 193

BLAST of MC10g_new0101 vs. ExPASy TrEMBL
Match: A0A6J1D842 (40S ribosomal protein S16-like OS=Momordica charantia OX=3673 GN=LOC111017782 PE=3 SV=1)

HSP 1 Score: 291 bits (746), Expect = 9.01e-100
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

BLAST of MC10g_new0101 vs. ExPASy TrEMBL
Match: A0A6J1J781 (40S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 SV=1)

HSP 1 Score: 291 bits (745), Expect = 1.28e-99
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

BLAST of MC10g_new0101 vs. ExPASy TrEMBL
Match: A0A0A0L6F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 291 bits (745), Expect = 1.28e-99
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

BLAST of MC10g_new0101 vs. ExPASy TrEMBL
Match: A0A1S3C210 (40S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1)

HSP 1 Score: 291 bits (745), Expect = 1.28e-99
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

BLAST of MC10g_new0101 vs. ExPASy TrEMBL
Match: A0A6J1D637 (40S ribosomal protein S16 OS=Momordica charantia OX=3673 GN=LOC111017623 PE=3 SV=1)

HSP 1 Score: 291 bits (745), Expect = 1.28e-99
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARARFQKSYR 144
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

BLAST of MC10g_new0101 vs. TAIR 10
Match: AT2G09990.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 260.8 bits (665), Expect = 6.6e-70
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 0

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

BLAST of MC10g_new0101 vs. TAIR 10
Match: AT5G18380.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 260.4 bits (664), Expect = 8.6e-70
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 0

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

BLAST of MC10g_new0101 vs. TAIR 10
Match: AT3G04230.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 246.9 bits (629), Expect = 9.9e-66
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 0

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARARFQKSYR 145
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146

BLAST of MC10g_new0101 vs. TAIR 10
Match: AT5G18380.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 227.6 bits (579), Expect = 6.2e-60
Identity = 108/125 (86.40%), Postives = 119/125 (95.20%), Query Frame = 0

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKF 131
           E  +F
Sbjct: 128 ELFRF 132

BLAST of MC10g_new0101 vs. TAIR 10
Match: AT5G18380.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 198.4 bits (503), Expect = 4.0e-51
Identity = 93/108 (86.11%), Postives = 104/108 (96.30%), Query Frame = 0

Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVR+
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRF 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P462936.9e-7295.7140S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1[more]
Q9SK229.3e-6989.2140S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1[more]
Q423401.2e-6888.4940S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1[more]
O226471.6e-6887.5940S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1[more]
Q9XEK71.3e-6585.2140S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
XP_022149351.11.86e-99100.0040S ribosomal protein S16-like [Momordica charantia][more]
XP_004136973.12.65e-9999.3140S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protei... [more]
XP_022989000.17.59e-9998.6140S ribosomal protein S16-like [Cucurbita maxima][more]
XP_040987369.11.08e-9897.9240S ribosomal protein S16 [Juglans microcarpa x Juglans regia][more]
KAE8645860.11.43e-9899.31hypothetical protein Csa_017052 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1D8429.01e-100100.0040S ribosomal protein S16-like OS=Momordica charantia OX=3673 GN=LOC111017782 PE... [more]
A0A6J1J7811.28e-9999.3140S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 ... [more]
A0A0A0L6F61.28e-9999.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1[more]
A0A1S3C2101.28e-9999.3140S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1[more]
A0A6J1D6371.28e-9999.3140S ribosomal protein S16 OS=Momordica charantia OX=3673 GN=LOC111017623 PE=3 SV... [more]
Match NameE-valueIdentityDescription
AT2G09990.16.6e-7089.21Ribosomal protein S5 domain 2-like superfamily protein [more]
AT5G18380.18.6e-7088.49Ribosomal protein S5 domain 2-like superfamily protein [more]
AT3G04230.19.9e-6684.89Ribosomal protein S5 domain 2-like superfamily protein [more]
AT5G18380.26.2e-6086.40Ribosomal protein S5 domain 2-like superfamily protein [more]
AT5G18380.34.0e-5186.11Ribosomal protein S5 domain 2-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000754Ribosomal protein S9PFAMPF00380Ribosomal_S9coord: 12..144
e-value: 2.4E-31
score: 108.8
IPR000754Ribosomal protein S9PANTHERPTHR21569RIBOSOMAL PROTEIN S9coord: 4..144
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 2..144
e-value: 1.8E-54
score: 185.9
NoneNo IPR availablePANTHERPTHR21569:SF28SUBFAMILY NOT NAMEDcoord: 4..144
IPR020574Ribosomal protein S9, conserved sitePROSITEPS00360RIBOSOMAL_S9coord: 72..90
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 7..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g_new0101.1MC10g_new0101.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome