MC10g_new0036 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g_new0036
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC10: 1337531 .. 1339815 (+)
RNA-Seq ExpressionMC10g_new0036
SyntenyMC10g_new0036
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCATATTGAAACAGGAAGCAAGGAAAAAACCAATTTTATTAGTTGGGTCTACACTACATCCATTGAAAGATCAAGATCTTCTAGGTTAATGGGCCTAAATGGGATACCGATCGATTGCTTGGGCCCATGGATCGTTCTTGGACTCTCCAATAATGGGCCGCACACACTCCCAAATCAAACTAACACATTTGGGCCCAGTGCCCATCCCTATTTGCCAAACCGTGTCTCCTTTTTCGACTCTCTCTTTAGCTTCCAAATACGCAAGTTCATACCACAGCGCAGAAGACGACTGGTTCCCAAATCTATGGAGAGTCATCAATCCCGCCTCCAAATCCTTCTCCTTAAGCTTCAGCACTTTTCCGATCGCCCTTATCACCGGACCCCCCGATACCGGCAAGCAAAAATGCCGAATCACGCTCTTGAAATTCGGCACGTAAATTTCTTGCGATTTGTCCACGTATCGCTTTCGCAGCCTGGAAACGCCGTGACGGAGTTTCTCCGACAGCGGCAAGATCGAAGAACCCATAATGGTTATGTTTGTTCGGAGAGTTTCGGGGAAAACCTGAAGCGTATCTCGTGTCACAGAGACTCCGAGTTTTCCGTCCGCGTCCTCCTCGCGAATGGCTGAAAGGTAACTTTTGTCGTCGAATGATGTCTGATTTCGAAGCGTTTTAAGTAGTTTATATTTTGAAGAATCTTTCGCTTCTTTTCTGTTTGTGAGTAGAATAGCTGCACTTCCCATACGGAAGAAACAGTTCAGGAGTAGTTTAGAGTGTTCTTTTCCTGCATACCAACCGTTCGACAAAATTTCTGTACTAAGCACAATGGCATAAGAGTTCTCGTGGACCTGAAGAAGATTTTCAGCTAATTGAATGGCAACAGCACTTGCACTGCACCCCATTCCAGAGAGATTATAGCTCTTAATGTCACTTCTCATGGAGAATCGATTGATAACTATGGAGGAGAGGGAAGGAGAAGGACAAAAGCCACTGCAATTAACGATCAGAATGTCAATGTCACGAGGAGAGAGATGGGTTTTGGTTAAAAGATCTTCCATGACAGGAAACAGCACCATATGGACTTCATTGATGGATTCCTGTTGATGGGTCTTGGGTGGAATGAAGTGTAAAGCTGGAGGGAGACATGTTTCTTCACTTTGTCCAGAAGATTTGAGAGTTTTGGCCATGAAACTGATGCTATCGCTATCAAAAGTATCAATCAAAGTCGCATTTTCTAGGAAAAAAGAGAAGGGAATTCTGCAGAAGCTTGGGGGTTTAAGGCATGAGAAGTCAACTAAATAAACTGAACGAGGAGCATTCAGAATGGAAGGCTTTATGATAATGAAGACGACATAACAAGACAGGAGTAGGAAGATGTGGAAAATGGGGTTCCATCCTTTTAAGAAAATATAAATTTCAATGGAACTCACGAGAATGAGAACGAGAAAGTTTAGAAGTTGGAAGAAAGTCAAGCGAAGGTGTGTGAATAATTGAGTGGAATGGAGGACAGTGCCGCCATGGCTGACCTTGGGAGCATAATCCATTGGTTATGGAGGAAAGGTTGAGGTGGCGATATGGAGAAATGGGAATCTTAATGGCGGTGCAGGTATGGCTTTTGAATTTTAGTGAAAAAAGGCAGCACCACACACACACAGAGTTGTATTGTAATGTTTTCCACATTCTGTACTGAGCTCTTAAAGCAGTATATATAGGAAAGAAATTACAGTACTAAATAGAAATACAGTAGGTAAAAAGGAAAAAAAAAAGAGAGATAATTGTGATCTTGAAAAACATAGTTGAATCAGGAGATGGTGAGGAAGTGACTTTTGGTTGCCCCACCTTTTGTTTGGTTCCCCAACACCCCATCCACCCATCCACCCACCCACCCACTCTTAACTCTCTCTCTCTCCCTCTACTCTTTACCTTATTGAATGCTGCTCTCCCCTCGCCTACAGCCTGCCACTTAATGTTGTTTGACCATTGGGGATGCCAACCCTGTTCCAATATTAGATTAGAAATGGAGAAAACTTCGAAGAAAGCTCCTCGAATACCGTGGTCCAGATAAATGTTTTCTTTTTAATTACTTATATCTCCTATATTTTCTCTTCTTCCATCTCAGATTAAGTCACATCTCCCTCCTTTTTCTCTCTTTTGTGTTCTTCGTATTTTGTTTTTTTATCTCCAATCTATCAGCTTAATATTTTAGGTTGAGTGGTGATCTTAACCAGGTATCAGAAAGGGAAGTCTATATAAATAAAGACAAATACTATGAGATTTTATGGA

mRNA sequence

ATGAAGTGTAAAGCTGGAGGGAGACATGTTTCTTCACTTTGTCCAGAAGATTTGAGAGTTTTGGCCATGAAACTGATGCTATCGCTATCAAAAGTATCAATCAAAGTCGCATTTTCTAGGAAAAAAGAGAAGGGAATTCTGCAGAAGCTTGGGGGTTTAAGGCATGAGAAGTCAACTAAATAA

Coding sequence (CDS)

ATGAAGTGTAAAGCTGGAGGGAGACATGTTTCTTCACTTTGTCCAGAAGATTTGAGAGTTTTGGCCATGAAACTGATGCTATCGCTATCAAAAGTATCAATCAAAGTCGCATTTTCTAGGAAAAAAGAGAAGGGAATTCTGCAGAAGCTTGGGGGTTTAAGGCATGAGAAGTCAACTAAATAA

Protein sequence

MKCKAGGRHVSSLCPEDLRVLAMKLMLSLSKVSIKVAFSRKKEKGILQKLGGLRHEKSTK
Homology
[Close]
BLAST of MC10g_new0036 vs. NCBI nr
Match: KAF7820843.1 (hypothetical protein G2W53_026298 [Senna tora])

HSP 1 Score: 62.4 bits (150), Expect = 7.93e-10
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 3   CKAGGRHVSSLCPEDLRVLAMKLMLSLSKVSIKVAFSRKKEKGILQKL 50
           CKAGGRHVSSLCPE++R+LAMK MLSL K     AFSR  E G LQ L
Sbjct: 94  CKAGGRHVSSLCPEEVRILAMKFMLSLLKEPNMEAFSRNVEMGALQYL 141

[Close]
BLAST of MC10g_new0036 vs. ExPASy TrEMBL
Match: A0A0A0L5P9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G178515 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 2.21e-26
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 0 

Query: 1  MKCKAGGRHVSSLCPEDLRVLAMKLMLSLSKVSIKVAFSRKKEKGILQKLGGLRHEKSTK 60
          MKC+AGGR V SLCPEDLRVLAMKL+LSLSK+SIKVAFSRK EKG L+KLGGLRHEKSTK
Sbjct: 22 MKCRAGGRQVCSLCPEDLRVLAMKLILSLSKISIKVAFSRKVEKGTLKKLGGLRHEKSTK 81

The following BLAST results are available for this feature:
BLAST of MC10g_new0036 vs.
Match NameE-valueIdentityDescription
BLAST of MC10g_new0036 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7820843.17.93e-1068.75hypothetical protein G2W53_026298 [Senna tora][more]
BLAST of MC10g_new0036 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5P92.21e-2686.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G178515 PE=4 SV=1[more]
BLAST of MC10g_new0036 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 55..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g_new0036.1MC10g_new0036.1mRNA