MC10g_new0005 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g_new0005
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC10: 262266 .. 262924 (+)
RNA-Seq ExpressionMC10g_new0005
SyntenyMC10g_new0005
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAAAACCTCTACCTTTCTTCTACCTATCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTCTTCCTTCTCTTCAGGTGAGAAAATTTTTGTTCAATACCCCATAGCTTACACAAATATAACCAACCTCCTCTCTTTCCATCTTTCCATTACAGTTGCAGAAGAGTTTGGGGATTTCAACACTCAGATGAGTCTTCATCACTCTCCTCACAAGGTACTGTAAAGCATAGCAGATCTGTGGAGAAATTGTTGAATATTTACTTTTTCGTGTTTGAAAGCTATTTACTTTTCTCTTCAACAACTGCCCTGCTACGAGAGATCCAAAGATTATATAAGTATCAAACATGATGTTTTCAACATCGCGATATTCCTAATTCGTAATCTAGAATTTTGATGGGTTTCATATATTTTCAGAAATCTGATATGGAGAACGAAGAATTCTTCCCTGCGAGTAATTTTCACTAAGAGGCAAATTTTAACCTCTGGAAGTTCTACTTACTTTGTCTAGGTTATCTAACAGAAATCTTTTCTTTCATGAAGGATGGATTCCAATCAGTGACTAAGAAGTTTTTGATGATTGAGAGACTAGATTACGAGGATCCTGTACCTAACCGTAAGCACGAGCCTCCGAAACCTGGCACCGGGAAGCCATAG

mRNA sequence

ATGGCTTCCAAAACCTCTACCTTTCTTCTACCTATCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTCTTCCTTCTCTTCAGTTGCAGAAGAGTTTGGGGATTTCAACACTCAGATGAGTCTTCATCACTCTCCTCACAAGGATGGATTCCAATCAGTGACTAAGAAGTTTTTGATGATTGAGAGACTAGATTACGAGGATCCTGTACCTAACCGTAAGCACGAGCCTCCGAAACCTGGCACCGGGAAGCCATAG

Coding sequence (CDS)

ATGGCTTCCAAAACCTCTACCTTTCTTCTACCTATCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTCTTCCTTCTCTTCAGTTGCAGAAGAGTTTGGGGATTTCAACACTCAGATGAGTCTTCATCACTCTCCTCACAAGGATGGATTCCAATCAGTGACTAAGAAGTTTTTGATGATTGAGAGACTAGATTACGAGGATCCTGTACCTAACCGTAAGCACGAGCCTCCGAAACCTGGCACCGGGAAGCCATAG

Protein sequence

MASKTSTFLLPILLLLLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMIERLDYEDPVPNRKHEPPKPGTGKP
Homology
BLAST of MC10g_new0005 vs. NCBI nr
Match: KAG7013312.1 (hypothetical protein SDJN02_26071, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.9 bits (154), Expect = 2.48e-11
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 26 SSVAEEFGDFNTQMSLHHSPHK-----DGFQSVTKKFLMIERLDYEDPVPNRKHEPPKPG 83
          +++  EFG  NT+M+L+HSP+K     DGFQ   +K L++ R DY+DPV N  HEP KP 
Sbjct: 3  AAIGGEFGASNTKMNLNHSPNKVYRKVDGFQMEMRKLLIVYRPDYDDPVDN--HEPQKPA 62

BLAST of MC10g_new0005 vs. NCBI nr
Match: XP_025014387.1 (uncharacterized protein LOC112535876 [Ricinus communis] >EEF36131.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 53.5 bits (127), Expect = 4.23e-07
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 14 LLLLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMIERLDYEDPVPNRK 73
          LLLL LL L  FSS   E   F   M+ +HS HKD FQ +  + L++  LDY+D  PN K
Sbjct: 10 LLLLSLLLLIPFSSGMVE--GFREGMNPNHSLHKDVFQMINTRKLLMNMLDYDDTGPNTK 69

Query: 74 HEPPKPGTGKP 84
          H+P K G GKP
Sbjct: 70 HDPRKKG-GKP 77

BLAST of MC10g_new0005 vs. NCBI nr
Match: KAA8533583.1 (hypothetical protein F0562_030983 [Nyssa sinensis])

HSP 1 Score: 51.2 bits (121), Expect = 4.01e-06
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 0

Query: 1  MASKTSTFLLPILLLLLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMI 60
          MA K  T    +L+LLLL +FLSS   +AE F D    M+  +S HKDGF   ++K L++
Sbjct: 1  MALKIKT---SLLVLLLLHIFLSS--GIAEGFSD---SMNHIYSVHKDGFPMNSRKLLVL 60

Query: 61 ER-LDYEDPVPNRKHEPPKPGTGKP 84
          +R LDY+   PN KH+P  P  GKP
Sbjct: 61 DRMLDYDYAGPNPKHDP-SPRKGKP 76

BLAST of MC10g_new0005 vs. NCBI nr
Match: XP_038686325.1 (uncharacterized protein LOC119985918 [Tripterygium wilfordii] >KAF5731277.1 hypothetical protein HS088_TW19G00884 [Tripterygium wilfordii])

HSP 1 Score: 50.8 bits (120), Expect = 5.94e-06
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 15 LLLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKD--GFQSVTKKFLMIER-LDYEDPVPN 74
          LL+LLL +  +S ++E F D   Q   HHS +KD  GF+  ++K LM++  LDY+D  PN
Sbjct: 12 LLVLLLVIPFYSGMSEGFKDGMNQN--HHSLYKDEVGFEINSRKLLMLDAMLDYDDAGPN 71

Query: 75 RKHEPP-KPGTG 82
           KH+P  KPGTG
Sbjct: 72 PKHDPRRKPGTG 81

BLAST of MC10g_new0005 vs. NCBI nr
Match: PNT08961.1 (hypothetical protein POPTR_012G017400 [Populus trichocarpa] >PNT08962.1 hypothetical protein POPTR_012G017400 [Populus trichocarpa] >PNT08963.1 hypothetical protein POPTR_012G017400 [Populus trichocarpa])

HSP 1 Score: 49.3 bits (116), Expect = 2.23e-05
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 15 LLLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMIERLDYEDPVPNRKH 74
          LL+ LL L+  SS   E   F+  M+ + S HKDG Q  T+K L+++ LDY+D   NR+H
Sbjct: 12 LLVSLLLLAPLSSGFVE--GFDEGMNSYPSLHKDGIQVNTRKLLLVDELDYDDAGANRRH 71

Query: 75 EPP-KPGTG 82
          +P  +PG G
Sbjct: 72 DPRGRPGVG 78

BLAST of MC10g_new0005 vs. ExPASy TrEMBL
Match: B9SJU3 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0736750 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.05e-07
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 0

Query: 14 LLLLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMIERLDYEDPVPNRK 73
          LLLL LL L  FSS   E   F   M+ +HS HKD FQ +  + L++  LDY+D  PN K
Sbjct: 10 LLLLSLLLLIPFSSGMVE--GFREGMNPNHSLHKDVFQMINTRKLLMNMLDYDDTGPNTK 69

Query: 74 HEPPKPGTGKP 84
          H+P K G GKP
Sbjct: 70 HDPRKKG-GKP 77

BLAST of MC10g_new0005 vs. ExPASy TrEMBL
Match: A0A5J5ARF7 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_030983 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.94e-06
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = 0

Query: 1  MASKTSTFLLPILLLLLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMI 60
          MA K  T    +L+LLLL +FLSS   +AE F D    M+  +S HKDGF   ++K L++
Sbjct: 1  MALKIKT---SLLVLLLLHIFLSS--GIAEGFSD---SMNHIYSVHKDGFPMNSRKLLVL 60

Query: 61 ER-LDYEDPVPNRKHEPPKPGTGKP 84
          +R LDY+   PN KH+P  P  GKP
Sbjct: 61 DRMLDYDYAGPNPKHDP-SPRKGKP 76

BLAST of MC10g_new0005 vs. ExPASy TrEMBL
Match: A0A7J7CBN4 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW19G00884 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.88e-06
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 0

Query: 15 LLLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKD--GFQSVTKKFLMIER-LDYEDPVPN 74
          LL+LLL +  +S ++E F D   Q   HHS +KD  GF+  ++K LM++  LDY+D  PN
Sbjct: 12 LLVLLLVIPFYSGMSEGFKDGMNQN--HHSLYKDEVGFEINSRKLLMLDAMLDYDDAGPN 71

Query: 75 RKHEPP-KPGTG 82
           KH+P  KPGTG
Sbjct: 72 PKHDPRRKPGTG 81

BLAST of MC10g_new0005 vs. ExPASy TrEMBL
Match: B9I1Y0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G017400 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.08e-05
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 0

Query: 15 LLLLLLFLSSFSSVAEEFGDFNTQMSLHHSPHKDGFQSVTKKFLMIERLDYEDPVPNRKH 74
          LL+ LL L+  SS   E   F+  M+ + S HKDG Q  T+K L+++ LDY+D   NR+H
Sbjct: 12 LLVSLLLLAPLSSGFVE--GFDEGMNSYPSLHKDGIQVNTRKLLLVDELDYDDAGANRRH 71

Query: 75 EPP-KPGTG 82
          +P  +PG G
Sbjct: 72 DPRGRPGVG 78

BLAST of MC10g_new0005 vs. ExPASy TrEMBL
Match: A0A6J1G0E0 (uncharacterized protein LOC111449569 OS=Cucurbita moschata OX=3662 GN=LOC111449569 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 5.69e-05
Identity = 22/37 (59.46%), Postives = 27/37 (72.97%), Query Frame = 0

Query: 47  KDGFQSVTKKFLMIERLDYEDPVPNRKHEPPKPGTGK 83
           +DGFQ   +K L++ R DY+DPV N  HEP KPGTGK
Sbjct: 78  EDGFQMEMRKLLIVYRPDYDDPVDN--HEPQKPGTGK 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7013312.12.48e-1150.79hypothetical protein SDJN02_26071, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_025014387.14.23e-0749.30uncharacterized protein LOC112535876 [Ricinus communis] >EEF36131.1 conserved hy... [more]
KAA8533583.14.01e-0645.88hypothetical protein F0562_030983 [Nyssa sinensis][more]
XP_038686325.15.94e-0647.22uncharacterized protein LOC119985918 [Tripterygium wilfordii] >KAF5731277.1 hypo... [more]
PNT08961.12.23e-0543.48hypothetical protein POPTR_012G017400 [Populus trichocarpa] >PNT08962.1 hypothet... [more]
Match NameE-valueIdentityDescription
B9SJU32.05e-0749.30Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0736750 PE=4 SV=1[more]
A0A5J5ARF71.94e-0645.88Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_030983 PE=4 SV=1[more]
A0A7J7CBN42.88e-0647.22Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW19G00884 ... [more]
B9I1Y01.08e-0543.48Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_012G017400 PE=4 ... [more]
A0A6J1G0E05.69e-0559.46uncharacterized protein LOC111449569 OS=Cucurbita moschata OX=3662 GN=LOC1114495... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g_new0005.1MC10g_new0005.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane