MC10g1404 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g1404
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	cold shock domain-containing protein 3
Location	MC10: 17443320 .. 17444102 (+)
RNA-Seq Expression	MC10g1404
Synteny	MC10g1404

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAGCGATTCGAAAGGATTTGGCTTCATCAAGCCAGATGTAGAAGGCCCGGATCTGTTCGTGCATCAATCCTCGATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGACCATGTCGAGTTTCAGATCGCCCCGGGCGATGATGGGAAATCGAAAGCCATCGAGGTTGTTTCCCTCGATGGATCTTCGGGAAACAGGAGGGATAACTTTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGTTATGGGTTTGGTGGCAGTGGCTGGAGAGGCGGTGATCGGCGGAACGGGAGCAGCGGAGCTGGTGGGGCTGGGTGCTATCACTGTGGTGAACAAGGGCATTTGGCCAGAGACTGTACTCGTGCTAGTAACCGCGGCGGAGGCGGCGGTGGTGGGTGTTTCACTTGCGGTGAGATTGGACACTTAGCGAGGGATTGCCCACGAGGAAACAGCGGTGGAGGCGGCGGTGCCGGTGCTGGGGCTTGCTATAATTGTGGCGGTTTTGGGCACTTGGCTAGGGATTGCAATCGGGGTGGAGCTGGAGGCGGAAGTGGTGGTGGCGGTGGTGGTGGTTGCTTTAATTGTGGAGAATATGGACATTTGGCTAGAGAATGCCCGAATGAAAGCCGTAACAGTGGCGGCACTGGAAGATTTGGCGGCGGCGGTGGCGGTGGCTCAAACACCTGCTTCAATTGTGGGAAATCGGGGCATTTTGCCAGGGAGTGTCCTGATGCACCT

mRNA sequence

ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAGCGATTCGAAAGGATTTGGCTTCATCAAGCCAGATGTAGAAGGCCCGGATCTGTTCGTGCATCAATCCTCGATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGACCATGTCGAGTTTCAGATCGCCCCGGGCGATGATGGGAAATCGAAAGCCATCGAGGTTGTTTCCCTCGATGGATCTTCGGGAAACAGGAGGGATAACTTTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGTTATGGGTTTGGTGGCAGTGGCTGGAGAGGCGGTGATCGGCGGAACGGGAGCAGCGGAGCTGGTGGGGCTGGGTGCTATCACTGTGGTGAACAAGGGCATTTGGCCAGAGACTGTACTCGTGCTAGTAACCGCGGCGGAGGCGGCGGTGGTGGGTGTTTCACTTGCGGTGAGATTGGACACTTAGCGAGGGATTGCCCACGAGGAAACAGCGGTGGAGGCGGCGGTGCCGGTGCTGGGGCTTGCTATAATTGTGGCGGTTTTGGGCACTTGGCTAGGGATTGCAATCGGGGTGGAGCTGGAGGCGGAAGTGGTGGTGGCGGTGGTGGTGGTTGCTTTAATTGTGGAGAATATGGACATTTGGCTAGAGAATGCCCGAATGAAAGCCGTAACAGTGGCGGCACTGGAAGATTTGGCGGCGGCGGTGGCGGTGGCTCAAACACCTGCTTCAATTGTGGGAAATCGGGGCATTTTGCCAGGGAGTGTCCTGATGCACCT

Coding sequence (CDS)

ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAGCGATTCGAAAGGATTTGGCTTCATCAAGCCAGATGTAGAAGGCCCGGATCTGTTCGTGCATCAATCCTCGATTAAATCCGATGGCTACCGGAGCCTTGTCGTCGGAGACCATGTCGAGTTTCAGATCGCCCCGGGCGATGATGGGAAATCGAAAGCCATCGAGGTTGTTTCCCTCGATGGATCTTCGGGAAACAGGAGGGATAACTTTGGTGGTGGTGGTGGTGGAAGGGGTGGCCGCGGCGGCGGTTATGGGTTTGGTGGCAGTGGCTGGAGAGGCGGTGATCGGCGGAACGGGAGCAGCGGAGCTGGTGGGGCTGGGTGCTATCACTGTGGTGAACAAGGGCATTTGGCCAGAGACTGTACTCGTGCTAGTAACCGCGGCGGAGGCGGCGGTGGTGGGTGTTTCACTTGCGGTGAGATTGGACACTTAGCGAGGGATTGCCCACGAGGAAACAGCGGTGGAGGCGGCGGTGCCGGTGCTGGGGCTTGCTATAATTGTGGCGGTTTTGGGCACTTGGCTAGGGATTGCAATCGGGGTGGAGCTGGAGGCGGAAGTGGTGGTGGCGGTGGTGGTGGTTGCTTTAATTGTGGAGAATATGGACATTTGGCTAGAGAATGCCCGAATGAAAGCCGTAACAGTGGCGGCACTGGAAGATTTGGCGGCGGCGGTGGCGGTGGCTCAAACACCTGCTTCAATTGTGGGAAATCGGGGCATTTTGCCAGGGAGTGTCCTGATGCACCT

Protein sequence

MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGGSNTCFNCGKSGHFARECPDAP

Homology

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BLAST of MC10g1404 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 4.8e-55
Identity = 147/298 (49.33%), Postives = 177/298 (59.40%), Query Frame = 0


Query: 5   RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WFSD KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVSLDGSSGNRRDNFGGGGGGR--------------GGRGGGYGFGGSGWRGGDRR 124
           KAIEV +  G S N+++N   G GG                G  GG  FGG    GG RR
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG----GGGRR 129

Query: 125 NGSSGAGGAGCYHCGEQGHLARDCTRA--SNRGGGGGGG--CFTCGEIGHLARDCPRGNS 184
           +G  G     CY CG+ GH ARDC ++   N GGGGGGG  C++CGE+GHLA+DC  G+ 
Sbjct: 130 SGGEGE----CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSG 189

Query: 185 ----GGGGGAGAG--ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLAREC 244
               GGGGG G+G   CY CGG GH ARDC +   GGG+ GGGG  C+ CG  GH+A+ C
Sbjct: 190 GNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQN--GGGNVGGGGSTCYTCGGVGHIAKVC 249

Query: 245 PNESRNSGGTG-----RFGG----------------GGGGGSNTCFNCGKSGHFAREC 258
            ++  + GG G       GG                GGGGGSN CF CGK GHFAREC
Sbjct: 250 TSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297

[Close]

BLAST of MC10g1404 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.2e-52
Identity = 142/290 (48.97%), Postives = 170/290 (58.62%), Query Frame = 0


Query: 5   RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R TG V WF+ SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGFG-----------GSGWRGGDRRNG 124
           KA+ V +  G S  + +N  G G  RGG G G Y  G           G G  GG+RR+ 
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRS- 129

Query: 125 SSGAGGAGCYHCGEQGHLARDCTRASN---RGG--GGGGGCFTCGEIGHLARDCPRGNSG 184
               GG GCY+CG+ GH ARDCT A N   RG   GG  GC+TCG++GH+ARDC + + G
Sbjct: 130 ---RGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVG 189

Query: 185 GGGGAGA-----GACYNCGGFGHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLAREC 244
            G   GA       CY CG  GH ARDC +  A G   SGGGG G C++CG  GH+AR+C
Sbjct: 190 NGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC 249

Query: 245 PNESRNS------GGTGRF-------GGGGGGGSNTCFNCGKSGHFAREC 258
             + + S      GG+G         G GGGG  N C+ CGK GHFAREC
Sbjct: 250 ATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295

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BLAST of MC10g1404 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.3e-39
Identity = 126/261 (48.28%), Postives = 147/261 (56.32%), Query Frame = 0


Query: 1   MAEE---RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA 60
           MAEE   R  G V+WFSD KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++ 
Sbjct: 1   MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVE 60

Query: 61  PGDDGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAG 120
            G DG++KA++V   DG++       GGGGGGRG  GGGYG GGSG  GG  R GS    
Sbjct: 61  SGGDGRTKAVDVTGPDGAAVQGGRGGGGGGGGRG--GGGYG-GGSGGYGGGGRGGS---- 120

Query: 121 GAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGAC 180
                                 RG GGG G +                 GGGGG G G+ 
Sbjct: 121 ----------------------RGYGGGDGGY-----------------GGGGGYGGGSR 180

Query: 181 YNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRF-GGG 240
           Y  GG G+       GG  GG G GGG GCF CGE GH AR+C ++S   GG GRF GGG
Sbjct: 181 YGGGGGGY-----GGGGGYGGGGSGGGSGCFKCGESGHFARDC-SQSGGGGGGGRFGGGG 209

Query: 241 GGGGSNTCFNCGKSGHFAREC 258
           GGGG   C+ CG+ GHFAREC
Sbjct: 241 GGGGGGGCYKCGEDGHFAREC 209

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BLAST of MC10g1404 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.8e-33
Identity = 106/231 (45.89%), Postives = 127/231 (54.98%), Query Frame = 0


Query: 4   ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF   KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVSLDGS---------SGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSS 123
            KAI+V   DG+         S   R  FGGG GG  G GGGYG GG G+ G     G  
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGG----RGGG 128

Query: 124 GAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGA 183
           G GG+ CY CGE GH+ARDC+      GGGG G                   GGGGG G 
Sbjct: 129 GRGGSDCYKCGEPGHMARDCSE-----GGGGYG-------------------GGGGGYGG 188

Query: 184 GACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESR 226
           G  Y  GG G+        G GG  GGGGGG C++CGE GH AR+C +  R
Sbjct: 189 GGGYGGGGGGY--------GGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of MC10g1404 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.2e-31
Identity = 105/220 (47.73%), Postives = 123/220 (55.91%), Query Frame = 0


Query: 4   ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           +R  G V+WF   KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVSLDGS--SGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAGC 123
            KAIEV   DG+   GN      GGGG  GGRG   GFGG G RGG R  GS G GG G 
Sbjct: 73  PKAIEVSGPDGAPVQGN-----SGGGGSSGGRG---GFGGGGGRGGGRGGGSYG-GGYGG 132

Query: 124 YHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCG 183
              G +G            GGGG   CF CGE GH+AR+C +G  G  GG G G      
Sbjct: 133 RGSGGRG------------GGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGG------ 192

Query: 184 GFGHLARDCNRGGAGGGSGGGGGG-GCFNCGEYGHLAREC 221
                     R G+GGG GGGGGG  C++CGE GH AR+C
Sbjct: 193 ----------RYGSGGGGGGGGGGLSCYSCGESGHFARDC 195

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BLAST of MC10g1404 vs. NCBI nr
Match: XP_022145255.1 (cold shock domain-containing protein 3 [Momordica charantia])

HSP 1 Score: 515 bits (1327), Expect = 3.65e-184
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAG 120
           DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAG
Sbjct: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAG 120

Query: 121 CYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNC 180
           CYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNC
Sbjct: 121 CYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNC 180

Query: 181 GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGG 240
           GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGG
Sbjct: 181 GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGG 240

Query: 241 SNTCFNCGKSGHFARECPDAP 261
           SNTCFNCGKSGHFARECPDAP
Sbjct: 241 SNTCFNCGKSGHFARECPDAP 261

[Close]

BLAST of MC10g1404 vs. NCBI nr
Match: KAG6596667.1 (Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 464 bits (1195), Expect = 4.99e-164
Identity = 245/265 (92.45%), Postives = 250/265 (94.34%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGFGGSGWRGGDRRNGSSGAGGA 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGG RGGRGGG YGFGG  WRGGDRRNGSSGAGG 
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGG-RGGRGGGGYGFGG--WRGGDRRNGSSGAGGG 120

Query: 121 GCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGA 180
           GCY CGEQGHLARDC RASNRGGGGG  GGCFTCGE+GHLARDCPRGNSGGGGG AG G 
Sbjct: 121 GCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGG 180

Query: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGG 240
           CYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGGG
Sbjct: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFGGG 240

Query: 241 GGGGSNTCFNCGKSGHFARECPDAP 261
           GGGG+NTCFNCGKSGHFARECPDAP
Sbjct: 241 GGGGANTCFNCGKSGHFARECPDAP 262

[Close]

BLAST of MC10g1404 vs. NCBI nr
Match: KAG7028203.1 (Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 461 bits (1185), Expect = 1.61e-162
Identity = 245/265 (92.45%), Postives = 250/265 (94.34%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGFGGSGWRGGDRRNGSSGAGGA 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGG RGGRGGG YGFGG  WRGGDRRNGSSGAGG 
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGG-RGGRGGGGYGFGG--WRGGDRRNGSSGAGGG 120

Query: 121 GCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGA 180
           GCY CGEQGHLARDC RASNRGGGGG  GGCFTCGE+GHLARDCPRGNSGGGGG AG G 
Sbjct: 121 GCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGG 180

Query: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGG 240
           CYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLAR+C NESRNSGG GRFGGG
Sbjct: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARDCQNESRNSGG-GRFGGG 240

Query: 241 GGGGSNTCFNCGKSGHFARECPDAP 261
           GGGG+NTCFNCGKSGHFARECPDAP
Sbjct: 241 GGGGANTCFNCGKSGHFARECPDAP 261

[Close]

BLAST of MC10g1404 vs. NCBI nr
Match: XP_023540854.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo] >XP_023540855.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457 bits (1177), Expect = 2.97e-161
Identity = 244/267 (91.39%), Postives = 249/267 (93.26%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGFGGSGWRGGDRRNGSSGAGGA 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGG RGGRGGG YGFGG  WRGGDRRNGSSGAGG 
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGG-RGGRGGGGYGFGG--WRGGDRRNGSSGAGGG 120

Query: 121 GCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGA 180
           GCY CGEQGHLARDC R SNRGGGGG  GGCFTCGE+GHLARDCPRGNSGGGGG AG G 
Sbjct: 121 GCYQCGEQGHLARDCARPSNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGG 180

Query: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGG--CFNCGEYGHLARECPNESRNSGGTGRFG 240
           CYNCGGFGHLARDCNRGGAGGGSGGGGGGG  CFNCGEYGHLAR+C NESRNSGG GRFG
Sbjct: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGGGGCFNCGEYGHLARDCQNESRNSGGGGRFG 240

Query: 241 GGGGGGSNTCFNCGKSGHFARECPDAP 261
           GGGGGG+NTCFNCGKSGHFARECPDAP
Sbjct: 241 GGGGGGANTCFNCGKSGHFARECPDAP 264

[Close]

BLAST of MC10g1404 vs. NCBI nr
Match: XP_022948847.1 (cold shock protein 1-like [Cucurbita moschata] >XP_022948857.1 cold shock protein 1-like [Cucurbita moschata])

HSP 1 Score: 457 bits (1176), Expect = 3.78e-161
Identity = 243/265 (91.70%), Postives = 248/265 (93.58%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           M EERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGFGGSGWRGGDRRNGSSGAGGA 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGG RGGRGGG YGFGG  WRGGDRRNGSSGAGG 
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGG-RGGRGGGGYGFGG--WRGGDRRNGSSGAGGG 120

Query: 121 GCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGA 180
           GCY CGEQGHLARDC RASNRGGGGG  GGCFTCGE+GHLARDCPRGNSGGGGG AG G 
Sbjct: 121 GCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGG 180

Query: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGG 240
           CYNCGGFGHLARDCNRGGAGGGSGG GGGGCFNCGEYGHLAR+C NESRNSGG GRFGGG
Sbjct: 181 CYNCGGFGHLARDCNRGGAGGGSGG-GGGGCFNCGEYGHLARDCQNESRNSGGGGRFGGG 240

Query: 241 GGGGSNTCFNCGKSGHFARECPDAP 261
           GGGG+NTCFNCGKSGHFARECPDAP
Sbjct: 241 GGGGANTCFNCGKSGHFARECPDAP 261

[Close]

BLAST of MC10g1404 vs. ExPASy TrEMBL
Match: A0A6J1CTY3 (cold shock domain-containing protein 3 OS=Momordica charantia OX=3673 GN=LOC111014753 PE=4 SV=1)

HSP 1 Score: 515 bits (1327), Expect = 1.77e-184
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAG 120
           DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAG
Sbjct: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAG 120

Query: 121 CYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNC 180
           CYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNC
Sbjct: 121 CYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNC 180

Query: 181 GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGG 240
           GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGG
Sbjct: 181 GGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGGGGGG 240

Query: 241 SNTCFNCGKSGHFARECPDAP 261
           SNTCFNCGKSGHFARECPDAP
Sbjct: 241 SNTCFNCGKSGHFARECPDAP 261

[Close]

BLAST of MC10g1404 vs. ExPASy TrEMBL
Match: A0A6J1GAE9 (cold shock protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452385 PE=4 SV=1)

HSP 1 Score: 457 bits (1176), Expect = 1.83e-161
Identity = 243/265 (91.70%), Postives = 248/265 (93.58%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           M EERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GD
Sbjct: 1   MGEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGFGGSGWRGGDRRNGSSGAGGA 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGG RGGRGGG YGFGG  WRGGDRRNGSSGAGG 
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGG-RGGRGGGGYGFGG--WRGGDRRNGSSGAGGG 120

Query: 121 GCYHCGEQGHLARDCTRASNRGGGGG--GGCFTCGEIGHLARDCPRGNSGGGGG-AGAGA 180
           GCY CGEQGHLARDC RASNRGGGGG  GGCFTCGE+GHLARDCPRGNSGGGGG AG G 
Sbjct: 121 GCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGG 180

Query: 181 CYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSGGTGRFGGG 240
           CYNCGGFGHLARDCNRGGAGGGSGG GGGGCFNCGEYGHLAR+C NESRNSGG GRFGGG
Sbjct: 181 CYNCGGFGHLARDCNRGGAGGGSGG-GGGGCFNCGEYGHLARDCQNESRNSGGGGRFGGG 240

Query: 241 GGGGSNTCFNCGKSGHFARECPDAP 261
           GGGG+NTCFNCGKSGHFARECPDAP
Sbjct: 241 GGGGANTCFNCGKSGHFARECPDAP 261

[Close]

BLAST of MC10g1404 vs. ExPASy TrEMBL
Match: A0A5D3CJR2 (Cold shock domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00680 PE=4 SV=1)

HSP 1 Score: 456 bits (1173), Expect = 7.82e-161
Identity = 242/273 (88.64%), Postives = 249/273 (91.21%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGG-------GYGFGGSGWRGGDRRNGS 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGGG GGRGG       GYGFGG  WRGGDRRNG+
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGG--WRGGDRRNGN 120

Query: 121 SGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEIGHLARDCPRGNSGGGG 180
           SG GG GCY CGEQGHLARDCTR SNR   GGGGGGGCFTCGE+GHLARDCPRGNSGGGG
Sbjct: 121 SGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGG 180

Query: 181 GAGAG--ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSG 240
           G G+G  ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGH+AR+C NESR SG
Sbjct: 181 GGGSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSG 240

Query: 241 GTG-RFGGGGGGGSNTCFNCGKSGHFARECPDA 260
           G G RFGGGGGGGSNTCFNCGKSGHFARECPDA
Sbjct: 241 GGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA 271

[Close]

BLAST of MC10g1404 vs. ExPASy TrEMBL
Match: E5RDD6 (Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 456 bits (1173), Expect = 7.82e-161
Identity = 242/273 (88.64%), Postives = 249/273 (91.21%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGG-------GYGFGGSGWRGGDRRNGS 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGGG GGRGG       GYGFGG  WRGGDRRNG+
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGG--WRGGDRRNGN 120

Query: 121 SGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEIGHLARDCPRGNSGGGG 180
           SG GG GCY CGEQGHLARDCTR SNR   GGGGGGGCFTCGE+GHLARDCPRGNSGGGG
Sbjct: 121 SGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGG 180

Query: 181 GAGAG--ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSG 240
           G G+G  ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGH+AR+C NESR SG
Sbjct: 181 GGGSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSG 240

Query: 241 GTG-RFGGGGGGGSNTCFNCGKSGHFARECPDA 260
           G G RFGGGGGGGSNTCFNCGKSGHFARECPDA
Sbjct: 241 GGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA 271

[Close]

BLAST of MC10g1404 vs. ExPASy TrEMBL
Match: A0A1S3BKK1 (cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 PE=4 SV=1)

HSP 1 Score: 456 bits (1173), Expect = 7.82e-161
Identity = 242/273 (88.64%), Postives = 249/273 (91.21%), Query Frame = 0


Query: 1   MAEERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWF+DSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVSLDGSSGNRRDNFGGGGGGRGGRGG-------GYGFGGSGWRGGDRRNGS 120
           DGKSKAIEVV+LDGSSGNRRDNFGGGGGG GGRGG       GYGFGG  WRGGDRRNG+
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGG--WRGGDRRNGN 120

Query: 121 SGAGGAGCYHCGEQGHLARDCTRASNR---GGGGGGGCFTCGEIGHLARDCPRGNSGGGG 180
           SG GG GCY CGEQGHLARDCTR SNR   GGGGGGGCFTCGE+GHLARDCPRGNSGGGG
Sbjct: 121 SGGGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGG 180

Query: 181 GAGAG--ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESRNSG 240
           G G+G  ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGH+AR+C NESR SG
Sbjct: 181 GGGSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHIARDCQNESRGSG 240

Query: 241 GTG-RFGGGGGGGSNTCFNCGKSGHFARECPDA 260
           G G RFGGGGGGGSNTCFNCGKSGHFARECPDA
Sbjct: 241 GGGGRFGGGGGGGSNTCFNCGKSGHFARECPDA 271

[Close]

BLAST of MC10g1404 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 216.1 bits (549), Expect = 3.4e-56
Identity = 147/298 (49.33%), Postives = 177/298 (59.40%), Query Frame = 0


Query: 5   RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WFSD KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVSLDGSSGNRRDNFGGGGGGR--------------GGRGGGYGFGGSGWRGGDRR 124
           KAIEV +  G S N+++N   G GG                G  GG  FGG    GG RR
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG----GGGRR 129

Query: 125 NGSSGAGGAGCYHCGEQGHLARDCTRA--SNRGGGGGGG--CFTCGEIGHLARDCPRGNS 184
           +G  G     CY CG+ GH ARDC ++   N GGGGGGG  C++CGE+GHLA+DC  G+ 
Sbjct: 130 SGGEGE----CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSG 189

Query: 185 ----GGGGGAGAG--ACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLAREC 244
               GGGGG G+G   CY CGG GH ARDC +   GGG+ GGGG  C+ CG  GH+A+ C
Sbjct: 190 GNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQN--GGGNVGGGGSTCYTCGGVGHIAKVC 249

Query: 245 PNESRNSGGTG-----RFGG----------------GGGGGSNTCFNCGKSGHFAREC 258
            ++  + GG G       GG                GGGGGSN CF CGK GHFAREC
Sbjct: 250 TSKIPSGGGGGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297

[Close]

BLAST of MC10g1404 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 207.2 bits (526), Expect = 1.6e-53
Identity = 142/290 (48.97%), Postives = 170/290 (58.62%), Query Frame = 0


Query: 5   RLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R TG V WF+ SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVSLDGSSGNRRDNFGGGGGGRGGRGGG-YGFG-----------GSGWRGGDRRNG 124
           KA+ V +  G S  + +N  G G  RGG G G Y  G           G G  GG+RR+ 
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRS- 129

Query: 125 SSGAGGAGCYHCGEQGHLARDCTRASN---RGG--GGGGGCFTCGEIGHLARDCPRGNSG 184
               GG GCY+CG+ GH ARDCT A N   RG   GG  GC+TCG++GH+ARDC + + G
Sbjct: 130 ---RGGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVG 189

Query: 185 GGGGAGA-----GACYNCGGFGHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLAREC 244
            G   GA       CY CG  GH ARDC +  A G   SGGGG G C++CG  GH+AR+C
Sbjct: 190 NGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDC 249

Query: 245 PNESRNS------GGTGRF-------GGGGGGGSNTCFNCGKSGHFAREC 258
             + + S      GG+G         G GGGG  N C+ CGK GHFAREC
Sbjct: 250 ATKRQPSRGCYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFAREC 295

[Close]

BLAST of MC10g1404 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 144.4 bits (363), Expect = 1.3e-34
Identity = 106/231 (45.89%), Postives = 127/231 (54.98%), Query Frame = 0


Query: 4   ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF   KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVSLDGS---------SGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSS 123
            KAI+V   DG+         S   R  FGGG GG  G GGGYG GG G+ G     G  
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGG----RGGG 128

Query: 124 GAGGAGCYHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGA 183
           G GG+ CY CGE GH+ARDC+      GGGG G                   GGGGG G 
Sbjct: 129 GRGGSDCYKCGEPGHMARDCSE-----GGGGYG-------------------GGGGGYGG 188

Query: 184 GACYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARECPNESR 226
           G  Y  GG G+        G GG  GGGGGG C++CGE GH AR+C +  R
Sbjct: 189 GGGYGGGGGGY--------GGGGRGGGGGGGSCYSCGESGHFARDCTSGGR 203

[Close]

BLAST of MC10g1404 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-32
Identity = 105/220 (47.73%), Postives = 123/220 (55.91%), Query Frame = 0


Query: 4   ERLTGVVQWFSDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           +R  G V+WF   KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVSLDGS--SGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAGC 123
            KAIEV   DG+   GN      GGGG  GGRG   GFGG G RGG R  GS G GG G 
Sbjct: 73  PKAIEVSGPDGAPVQGN-----SGGGGSSGGRG---GFGGGGGRGGGRGGGSYG-GGYGG 132

Query: 124 YHCGEQGHLARDCTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCG 183
              G +G            GGGG   CF CGE GH+AR+C +G  G  GG G G      
Sbjct: 133 RGSGGRG------------GGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGG------ 192

Query: 184 GFGHLARDCNRGGAGGGSGGGGGG-GCFNCGEYGHLAREC 221
                     R G+GGG GGGGGG  C++CGE GH AR+C
Sbjct: 193 ----------RYGSGGGGGGGGGGLSCYSCGESGHFARDC 195

[Close]

BLAST of MC10g1404 vs. TAIR 10
Match: AT2G36120.1 (Glycine-rich protein family )

HSP 1 Score: 46.2 bits (108), Expect = 4.6e-05
Identity = 80/184 (43.48%), Postives = 89/184 (48.37%), Query Frame = 0


Query: 74  GSSGNRRDNFGGGGGGRGGRGGGYGFGGSGWRGGDRRNGSSGAGGAGCYHCGEQGHLARD 133
           G+ G+   + GGGGG  GG GGG G GG G  GG    GS   GGAG Y  GE G     
Sbjct: 71  GAGGHGEGHIGGGGG--GGHGGGAGGGGGGGPGGGYGGGSGEGGGAG-YGGGEAG----- 130

Query: 134 CTRASNRGGGGGGGCFTCGEIGHLARDCPRGNSGGGGGAGAGACYNCGGFGHLARDCNRG 193
                  GGGGGGG    G  G  A     G  GGG GAGAG  Y  GG G      + G
Sbjct: 131 -----GHGGGGGGGAGGGGGGGGGAHG---GGYGGGQGAGAGGGYGGGGAGG-----HGG 190

Query: 194 GAGGGSGGGGGGGCFNCGEY--GHLARECPNESRNSG-GTGRFGGGGGGGSNTCFNCGKS 253
           G GGG+GGGGGGG    G +  G+ A     E    G G G  GGGGGGG  +    G  
Sbjct: 191 GGGGGNGGGGGGGSGEGGAHGGGYGAGGGAGEGYGGGAGAGGHGGGGGGGGGSGGGGGGG 233

Query: 254 GHFA 255
           G +A
Sbjct: 251 GGYA 233

The following BLAST results are available for this feature:

BLAST of MC10g1404 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94C69	4.8e-55	49.33	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	2.2e-52	48.97	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]
P27484	1.3e-39	48.28	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q41188	1.8e-33	45.89	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q38896	2.2e-31	47.73	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]

BLAST of MC10g1404 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145255.1	3.65e-184	100.00	cold shock domain-containing protein 3 [Momordica charantia]	[more]
KAG6596667.1	4.99e-164	92.45	Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7028203.1	1.61e-162	92.45	Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023540854.1	2.97e-161	91.39	cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo] >XP_023...	[more]
XP_022948847.1	3.78e-161	91.70	cold shock protein 1-like [Cucurbita moschata] >XP_022948857.1 cold shock protei...	[more]

BLAST of MC10g1404 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTY3	1.77e-184	100.00	cold shock domain-containing protein 3 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GAE9	1.83e-161	91.70	cold shock protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111452385 PE=4 SV=...	[more]
A0A5D3CJR2	7.82e-161	88.64	Cold shock domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
E5RDD6	7.82e-161	88.64	Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4...	[more]
A0A1S3BKK1	7.82e-161	88.64	cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 P...	[more]

BLAST of MC10g1404 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17870.1	3.4e-56	49.33	cold shock domain protein 3	[more]
AT4G36020.1	1.6e-53	48.97	cold shock domain protein 1	[more]
AT4G38680.1	1.3e-34	45.89	glycine rich protein 2	[more]
AT2G21060.1	1.5e-32	47.73	glycine-rich protein 2B	[more]
AT2G36120.1	4.6e-05	43.48	Glycine-rich protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 8..23 score: 56.18 coord: 44..62 score: 40.09 coord: 29..38 score: 59.44
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 7..71 e-value: 4.6E-22 score: 77.6
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 5..71 score: 29.305492
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 7..69 e-value: 4.38251E-24 score: 89.9454
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 147..163 e-value: 3.7E-5 score: 33.1 coord: 243..259 e-value: 5.9E-6 score: 35.8 coord: 176..192 e-value: 4.0E-4 score: 29.7 coord: 120..136 e-value: 3.4E-4 score: 29.9 coord: 206..222 e-value: 7.4E-6 score: 35.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 206..222 e-value: 1.2E-7 score: 31.5 coord: 176..190 e-value: 3.3E-6 score: 26.9 coord: 120..135 e-value: 1.4E-6 score: 28.1 coord: 242..258 e-value: 5.0E-8 score: 32.7 coord: 147..162 e-value: 1.3E-7 score: 31.4
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 121..136 score: 10.95486
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 244..259 score: 11.432861
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 177..190 score: 10.476859
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 207..222 score: 11.251551
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 148..163 score: 11.086722
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 7..72 e-value: 9.3E-24 score: 94.9
None	No IPR available	GENE3D	4.10.60.10		coord: 100..143 e-value: 1.7E-6 score: 29.8
None	No IPR available	GENE3D	2.40.50.140		coord: 1..70 e-value: 2.5E-24 score: 87.0
None	No IPR available	GENE3D	4.10.60.10		coord: 172..199 e-value: 1.4E-5 score: 26.6 coord: 238..261 e-value: 1.6E-8 score: 36.0 coord: 144..170 e-value: 2.7E-7 score: 32.1 coord: 203..229 e-value: 4.8E-8 score: 34.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..96
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 110..141
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 137..260 coord: 1..111
None	No IPR available	PANTHER	PTHR46565:SF12	COLD SHOCK PROTEIN 2	coord: 110..141
None	No IPR available	PANTHER	PTHR46565:SF12	COLD SHOCK PROTEIN 2	coord: 137..260 coord: 1..111
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 19..38
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 176..222
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 226..259
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 111..165
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 4..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g1404.1	MC10g1404.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding