MC10g1394 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g1394
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Mediator of RNA polymerase II transcription subunit 10
Location	MC10: 17384474 .. 17385290 (+)
RNA-Seq Expression	MC10g1394
Synteny	MC10g1394

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCGGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCAGTCATTAACGATACATCAGCATCGGCAACAGTGGATGACTCGAAGCAAAACTTGAACCAAGTAATCAACTCCATACAGAAGACTTTGGGCCTCCTCCATCAGCTTAACCTCACCGTTTCTAACTTCAATGCGGCTTATCAGCTGCCTCTTTTACAACGCCTGTATGCTGATTTTGCTTCATCTAATATCTAATTCTTTATTATCTCCGTATTCCACTGAGTCCACTCTTTACCAGTGATATTCTTCTTGACTTTACAGTAATTCTCTCGTTATGGAGCTAGATAACATGGTTAAATTATCAGAGAAATGCAACATACAGGTTCCTATGGAGGTTCTTAAGTGAGTCTTCGCACCACCTTTTTTGATCTCTAACTCTGCGAACTTTTTCTATTTTGTACACTACATGGTTCTCTTGGTCCAATTCTTACTTTTCTTTTAATTAGTTTGATCGATGATGGGAAGAATCCGGATGAATTCACGAGGGACGTAATAAATAGTTGCATTGCAAAAAATCAGAGTACAAAAGGCAAAACTGATGCGTTCAAGGTAGTCTTTATGTCCCTATGTGACAGGCTGTTAAAATCTACTTCACTCATATTTGTATCTTGATTTTCAAAAATTCACAAAAATATTTACTGAACCTTGTACCACATACTATCTTCAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCTGATGAAGTCGAGTCATACAGAGAAATTCGTGCTGCTTCTGCTGCT

mRNA sequence

ATGGATTCGGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCAGTCATTAACGATACATCAGCATCGGCAACAGTGGATGACTCGAAGCAAAACTTGAACCAAGTAATCAACTCCATACAGAAGACTTTGGGCCTCCTCCATCAGCTTAACCTCACCGTTTCTAACTTCAATGCGGCTTATCAGCTGCCTCTTTTACAACGCCTTAATTCTCTCGTTATGGAGCTAGATAACATGGTTAAATTATCAGAGAAATGCAACATACAGGTTCCTATGGAGGTTCTTAATTTGATCGATGATGGGAAGAATCCGGATGAATTCACGAGGGACGTAATAAATAGTTGCATTGCAAAAAATCAGAGTACAAAAGGCAAAACTGATGCGTTCAAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCTGATGAAGTCGAGTCATACAGAGAAATTCGTGCTGCTTCTGCTGCT

Coding sequence (CDS)

ATGGATTCGGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCAGTCATTAACGATACATCAGCATCGGCAACAGTGGATGACTCGAAGCAAAACTTGAACCAAGTAATCAACTCCATACAGAAGACTTTGGGCCTCCTCCATCAGCTTAACCTCACCGTTTCTAACTTCAATGCGGCTTATCAGCTGCCTCTTTTACAACGCCTTAATTCTCTCGTTATGGAGCTAGATAACATGGTTAAATTATCAGAGAAATGCAACATACAGGTTCCTATGGAGGTTCTTAATTTGATCGATGATGGGAAGAATCCGGATGAATTCACGAGGGACGTAATAAATAGTTGCATTGCAAAAAATCAGAGTACAAAAGGCAAAACTGATGCGTTCAAGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCTGATGAAGTCGAGTCATACAGAGAAATTCGTGCTGCTTCTGCTGCT

Protein sequence

MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA

Homology

[Close]

BLAST of MC10g1394 vs. ExPASy Swiss-Prot
Match: F4HPA7 (Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana OX=3702 GN=MED10B PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.7e-58
Identity = 127/170 (74.71%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSV---INDTSASATV-DDSKQNLNQVINSIQKTLGLLHQL 60
           MD  QN S  AG GGS  NG++    ND +++ TV DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 61  NLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRD 120
           +LTV++F  A QL LLQRLNSLVMELDNM KLSEKCNIQ+PMEVLNLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 121 VINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           V+NSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAA
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAA 166

[Close]

BLAST of MC10g1394 vs. ExPASy Swiss-Prot
Match: Q9FHZ2 (Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana OX=3702 GN=MED10A PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-54
Identity = 121/167 (72.46%), Postives = 137/167 (82.04%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MD  QN  + AG G    NGS+  + +A ATVDDS + LNQ+INS QK L LLHQL LTV
Sbjct: 1   MDQTQN--TIAGIGEI--NGSIKTEINAIATVDDSNEKLNQIINSNQKILELLHQLKLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVIN- 120
           S+F  A QL LLQRLNSLVMELDNM KLS+KCNIQVP+EVLNLIDDGKNPDEFT+DV+N 
Sbjct: 61  SSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNK 120

Query: 121 SCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           +CIAKNQ TKGK+DAFKGLRKHLLEELEQ FPDEV+ YR+IRA+ AA
Sbjct: 121 NCIAKNQVTKGKSDAFKGLRKHLLEELEQAFPDEVDRYRDIRASYAA 163

[Close]

BLAST of MC10g1394 vs. ExPASy Swiss-Prot
Match: Q16G71 (Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti OX=7159 GN=MED10 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.6e-17
Identity = 43/123 (34.96%), Postives = 76/123 (61.79%), Query Frame = 0


Query: 39  LNQVINSIQKTLGLLHQLNLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPM 98
           L  + N ++  +  + Q+ + VS+F    Q  L Q++ SLV  L  + KL  + ++ VP+
Sbjct: 5   LENLENHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQVDVNVPL 64

Query: 99  EVLNLIDDGKNPDEFTRDVINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYR 158
           EV + ID G+NP  +T+D I+  + KN+  KGK D+++  + +L++EL++TFP E+  Y+
Sbjct: 65  EVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELDETFPTEIAKYK 124

Query: 159 EIR 162
            IR
Sbjct: 125 AIR 127

[Close]

BLAST of MC10g1394 vs. ExPASy Swiss-Prot
Match: Q7Q5R5 (Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae OX=7165 GN=MED10 PE=3 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 43/123 (34.96%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 39  LNQVINSIQKTLGLLHQLNLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPM 98
           L  + N ++  +  + Q+ + VS+F    Q  L Q++ SLV  L  + KL  + ++ VP+
Sbjct: 5   LENLENHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQIDVNVPL 64

Query: 99  EVLNLIDDGKNPDEFTRDVINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYR 158
           EV + ID G+NP  +T+D I+  + KN+  KGK D+++  + +L++EL +TFP E+  Y+
Sbjct: 65  EVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYRKFKSNLMKELSETFPVEISKYK 124

Query: 159 EIR 162
            IR
Sbjct: 125 AIR 127

[Close]

BLAST of MC10g1394 vs. ExPASy Swiss-Prot
Match: Q9CXU0 (Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus OX=10090 GN=Med10 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-14
Identity = 42/117 (35.90%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 46  IQKTLGLLHQLNLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKC-NIQVPMEVLNLI 105
           ++K +  + QL + VS+F  + Q  L Q+LN +V  L ++ K  ++  +I VP+EV   I
Sbjct: 12  LEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query: 106 DDGKNPDEFTRDVINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIR 162
           D G+NP  +T++ +   +AKN+  KGK D  K  +  L++EL + FP+++  YR IR
Sbjct: 72  DQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIR 128

[Close]

BLAST of MC10g1394 vs. NCBI nr
Match: XP_022145303.1 (mediator of RNA polymerase II transcription subunit 10b-like [Momordica charantia] >XP_022145304.1 mediator of RNA polymerase II transcription subunit 10b-like [Momordica charantia] >XP_022145305.1 mediator of RNA polymerase II transcription subunit 10b-like [Momordica charantia] >XP_022145306.1 mediator of RNA polymerase II transcription subunit 10b-like [Momordica charantia])

HSP 1 Score: 308 bits (790), Expect = 4.23e-105
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of MC10g1394 vs. NCBI nr
Match: XP_022923485.1 (mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923486.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923487.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923488.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923489.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923491.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022923492.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata] >XP_022965379.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965380.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965381.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965383.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965384.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965385.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_022965386.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita maxima] >XP_023553208.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553209.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553210.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553211.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo] >XP_023553212.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301 bits (770), Expect = 4.73e-102
Identity = 160/166 (96.39%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSAS TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of MC10g1394 vs. NCBI nr
Match: KAA0052968.1 (mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo var. makuwa] >TYK11424.1 mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 300 bits (767), Expect = 6.56e-102
Identity = 160/166 (96.39%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS S TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of MC10g1394 vs. NCBI nr
Match: XP_016900643.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X2 [Cucumis melo])

HSP 1 Score: 300 bits (767), Expect = 7.79e-102
Identity = 160/166 (96.39%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS S TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of MC10g1394 vs. NCBI nr
Match: KAG7015809.1 (Mediator of RNA polymerase II transcription subunit 10b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 301 bits (770), Expect = 1.16e-101
Identity = 160/166 (96.39%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSAS TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of MC10g1394 vs. ExPASy TrEMBL
Match: A0A6J1CVZ0 (Mediator of RNA polymerase II transcription subunit 10 OS=Momordica charantia OX=3673 GN=LOC111014791 PE=3 SV=1)

HSP 1 Score: 308 bits (790), Expect = 2.05e-105
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of MC10g1394 vs. ExPASy TrEMBL
Match: A0A6J1HLJ2 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita maxima OX=3661 GN=LOC111465259 PE=3 SV=1)

HSP 1 Score: 301 bits (770), Expect = 2.29e-102
Identity = 160/166 (96.39%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSAS TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of MC10g1394 vs. ExPASy TrEMBL
Match: A0A6J1E6X8 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita moschata OX=3662 GN=LOC111431167 PE=3 SV=1)

HSP 1 Score: 301 bits (770), Expect = 2.29e-102
Identity = 160/166 (96.39%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTSAS TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEV+NLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCTIQVPMEVVNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of MC10g1394 vs. ExPASy TrEMBL
Match: A0A5D3CJS3 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo var. makuwa OX=1194695 GN=MED10 PE=3 SV=1)

HSP 1 Score: 300 bits (767), Expect = 3.17e-102
Identity = 160/166 (96.39%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS S TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of MC10g1394 vs. ExPASy TrEMBL
Match: A0A1S4DXE0 (Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 GN=LOC103490703 PE=3 SV=1)

HSP 1 Score: 300 bits (767), Expect = 3.77e-102
Identity = 160/166 (96.39%), Postives = 163/166 (98.19%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MDSAQNASSAAGTGGSGGNGSVINDTS S TVDDSKQNLNQVINSIQKTLG+LHQLNLTV
Sbjct: 1   MDSAQNASSAAGTGGSGGNGSVINDTSVSTTVDDSKQNLNQVINSIQKTLGILHQLNLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVINS 120
           SNFNAAYQLPLLQRLNSLV+ELDNMVKLSEKC IQVPMEVLNLIDDGKNPDEFTRDV+NS
Sbjct: 61  SNFNAAYQLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNS 120

Query: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166
           CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA
Sbjct: 121 CIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 166

[Close]

BLAST of MC10g1394 vs. TAIR 10
Match: AT1G26665.2 (Mediator complex, subunit Med10 )

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-59
Identity = 127/170 (74.71%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSV---INDTSASATV-DDSKQNLNQVINSIQKTLGLLHQL 60
           MD  QN S  AG GGS  NG++    ND +++ TV DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 61  NLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRD 120
           +LTV++F  A QL LLQRLNSLVMELDNM KLSEKCNIQ+PMEVLNLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 121 VINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           V+NSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAA
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAA 166

[Close]

BLAST of MC10g1394 vs. TAIR 10
Match: AT1G26665.1 (Mediator complex, subunit Med10 )

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-59
Identity = 127/170 (74.71%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSV---INDTSASATV-DDSKQNLNQVINSIQKTLGLLHQL 60
           MD  QN S  AG GGS  NG++    ND +++ TV DDSK+NL+QVINSI+KTLG+LHQL
Sbjct: 1   MDPTQNTS--AGIGGS--NGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQL 60

Query: 61  NLTVSNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRD 120
           +LTV++F  A QL LLQRLNSLVMELDNM KLSEKCNIQ+PMEVLNLIDDGKNPDEFT+D
Sbjct: 61  HLTVTSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKD 120

Query: 121 VINSCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           V+NSCIA+NQ TKGKTDAFK LRKH+LEELEQ FPDEV+ YREIRA+SAA
Sbjct: 121 VLNSCIARNQVTKGKTDAFKDLRKHILEELEQNFPDEVDMYREIRASSAA 166

[Close]

BLAST of MC10g1394 vs. TAIR 10
Match: AT5G41910.1 (Mediator complex, subunit Med10 )

HSP 1 Score: 212.2 bits (539), Expect = 3.1e-55
Identity = 121/167 (72.46%), Postives = 137/167 (82.04%), Query Frame = 0


Query: 1   MDSAQNASSAAGTGGSGGNGSVINDTSASATVDDSKQNLNQVINSIQKTLGLLHQLNLTV 60
           MD  QN  + AG G    NGS+  + +A ATVDDS + LNQ+INS QK L LLHQL LTV
Sbjct: 1   MDQTQN--TIAGIGEI--NGSIKTEINAIATVDDSNEKLNQIINSNQKILELLHQLKLTV 60

Query: 61  SNFNAAYQLPLLQRLNSLVMELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFTRDVIN- 120
           S+F  A QL LLQRLNSLVMELDNM KLS+KCNIQVP+EVLNLIDDGKNPDEFT+DV+N 
Sbjct: 61  SSFTPASQLHLLQRLNSLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNK 120

Query: 121 SCIAKNQSTKGKTDAFKGLRKHLLEELEQTFPDEVESYREIRAASAA 167
           +CIAKNQ TKGK+DAFKGLRKHLLEELEQ FPDEV+ YR+IRA+ AA
Sbjct: 121 NCIAKNQVTKGKSDAFKGLRKHLLEELEQAFPDEVDRYRDIRASYAA 163

The following BLAST results are available for this feature:

BLAST of MC10g1394 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HPA7	1.7e-58	74.71	Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana ...	[more]
Q9FHZ2	4.4e-54	72.46	Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana ...	[more]
Q16G71	5.6e-17	34.96	Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti OX=7159 ...	[more]
Q7Q5R5	1.2e-16	34.96	Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae OX=7...	[more]
Q9CXU0	1.2e-14	35.90	Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus OX=10090 ...	[more]

BLAST of MC10g1394 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145303.1	4.23e-105	100.00	mediator of RNA polymerase II transcription subunit 10b-like [Momordica charanti...	[more]
XP_022923485.1	4.73e-102	96.39	mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata...	[more]
KAA0052968.1	6.56e-102	96.39	mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo...	[more]
XP_016900643.1	7.79e-102	96.39	PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X2 [C...	[more]
KAG7015809.1	1.16e-101	96.39	Mediator of RNA polymerase II transcription subunit 10b [Cucurbita argyrosperma ...	[more]

BLAST of MC10g1394 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVZ0	2.05e-105	100.00	Mediator of RNA polymerase II transcription subunit 10 OS=Momordica charantia OX...	[more]
A0A6J1HLJ2	2.29e-102	96.39	Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita maxima OX=36...	[more]
A0A6J1E6X8	2.29e-102	96.39	Mediator of RNA polymerase II transcription subunit 10 OS=Cucurbita moschata OX=...	[more]
A0A5D3CJS3	3.17e-102	96.39	Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo var. maku...	[more]
A0A1S4DXE0	3.77e-102	96.39	Mediator of RNA polymerase II transcription subunit 10 OS=Cucumis melo OX=3656 G...	[more]

BLAST of MC10g1394 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26665.2	1.2e-59	74.71	Mediator complex, subunit Med10	[more]
AT1G26665.1	1.2e-59	74.71	Mediator complex, subunit Med10	[more]
AT5G41910.1	3.1e-55	72.46	Mediator complex, subunit Med10	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019145	Mediator complex, subunit Med10	PFAM	PF09748	Med10	coord: 45..158 e-value: 4.1E-30 score: 104.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR13345:SF9	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10A-RELATED	coord: 1..166
None	No IPR available	PANTHER	PTHR13345	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10	coord: 1..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g1394.1	MC10g1394.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0000785	chromatin
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity