MC10g1290 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g1290
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC10: 16362513 .. 16362725 (+)
RNA-Seq ExpressionMC10g1290
SyntenyMC10g1290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCTCCTCCTCATGATCAGAAGCTACACTGTTGTGGACGACACATACTGGCGCATGGTTCAGAGCGACACCAAAGAATTGACATTGAACTACACCTGCACCACCGATTCTGAATGCACCCCGATTCTATTAGACGACCTTTTAAACAACTTCTTCAAGCACGAGGTCATGGCCCTAAACTCATGCAGCTTTGTCGACACCACCACCATTGCC

mRNA sequence

TTCCTCCTCCTCATGATCAGAAGCTACACTGTTGTGGACGACACATACTGGCGCATGGTTCAGAGCGACACCAAAGAATTGACATTGAACTACACCTGCACCACCGATTCTGAATGCACCCCGATTCTATTAGACGACCTTTTAAACAACTTCTTCAAGCACGAGGTCATGGCCCTAAACTCATGCAGCTTTGTCGACACCACCACCATTGCC

Coding sequence (CDS)

TTCCTCCTCCTCATGATCAGAAGCTACACTGTTGTGGACGACACATACTGGCGCATGGTTCAGAGCGACACCAAAGAATTGACATTGAACTACACCTGCACCACCGATTCTGAATGCACCCCGATTCTATTAGACGACCTTTTAAACAACTTCTTCAAGCACGAGGTCATGGCCCTAAACTCATGCAGCTTTGTCGACACCACCACCATTGCC

Protein sequence

FLLLMIRSYTVVDDTYWRMVQSDTKELTLNYTCTTDSECTPILLDDLLNNFFKHEVMALNSCSFVDTTTIA
Homology
[Close]
BLAST of MC10g1290 vs. NCBI nr
Match: XP_004138961.2 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus])

HSP 1 Score: 50.8 bits (120), Expect = 2.35e-05
Identity = 28/80 (35.00%), Postives = 40/80 (50.00%), Query Frame = 0 

Query: 10  TVVDDTYWRMVQSDTK----ELTLNYTCTTDSECTPILLDDL--------------LNNF 69
           + VD  YW + +SD      +  L+Y C T +ECTPI+L+ L               N+F
Sbjct: 23  STVDGAYWCVARSDATYESLQAALDYACATGAECTPIMLNGLCFLPNTIQAHASYAFNSF 82

Query: 70  FKHEVMALNSCSFVDTTTIA 71
           F+ + MA  SC F  + TIA
Sbjct: 83  FQRKAMAPGSCDFAGSATIA 102

[Close]
BLAST of MC10g1290 vs. NCBI nr
Match: KAA0033304.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo var. makuwa] >TYK21601.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo var. makuwa])

HSP 1 Score: 49.7 bits (117), Expect = 2.39e-05
Identity = 29/89 (32.58%), Postives = 43/89 (48.31%), Query Frame = 0 

Query: 1   FLLLMIRSYTVVDDTYWRMVQSDTK----ELTLNYTCTTDSECTPILLDDL--------- 60
           F L  +   + VD  YW + +SD      +  ++Y C T ++CTPILL+ L         
Sbjct: 16  FFLFFLIGTSAVDGAYWCVARSDATYESLQAAIDYACATGADCTPILLNGLCFLPNTIQA 75

Query: 61  -----LNNFFKHEVMALNSCSFVDTTTIA 71
                 N+FF+ + MA  SC F  + TIA
Sbjct: 76  HASYAFNSFFQRKAMAPGSCDFGGSATIA 104

[Close]
BLAST of MC10g1290 vs. NCBI nr
Match: KAE8651770.1 (hypothetical protein Csa_006265 [Cucumis sativus])

HSP 1 Score: 50.8 bits (120), Expect = 2.90e-05
Identity = 28/80 (35.00%), Postives = 40/80 (50.00%), Query Frame = 0 

Query: 10  TVVDDTYWRMVQSDTK----ELTLNYTCTTDSECTPILLDDL--------------LNNF 69
           + VD  YW + +SD      +  L+Y C T +ECTPI+L+ L               N+F
Sbjct: 51  STVDGAYWCVARSDATYESLQAALDYACATGAECTPIMLNGLCFLPNTIQAHASYAFNSF 110

Query: 70  FKHEVMALNSCSFVDTTTIA 71
           F+ + MA  SC F  + TIA
Sbjct: 111 FQRKAMAPGSCDFAGSATIA 130

[Close]
BLAST of MC10g1290 vs. NCBI nr
Match: XP_008457240.1 (PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo])

HSP 1 Score: 49.7 bits (117), Expect = 6.42e-05
Identity = 29/89 (32.58%), Postives = 43/89 (48.31%), Query Frame = 0 

Query: 1   FLLLMIRSYTVVDDTYWRMVQSDTK----ELTLNYTCTTDSECTPILLDDL--------- 60
           F L  +   + VD  YW + +SD      +  ++Y C T ++CTPILL+ L         
Sbjct: 16  FFLFFLIGTSAVDGAYWCVARSDATYESLQAAIDYACATGADCTPILLNGLCFLPNTIQA 75

Query: 61  -----LNNFFKHEVMALNSCSFVDTTTIA 71
                 N+FF+ + MA  SC F  + TIA
Sbjct: 76  HASYAFNSFFQRKAMAPGSCDFGGSATIA 104

[Close]
BLAST of MC10g1290 vs. NCBI nr
Match: XP_038875835.1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Benincasa hispida])

HSP 1 Score: 48.9 bits (115), Expect = 1.37e-04
Identity = 27/80 (33.75%), Postives = 39/80 (48.75%), Query Frame = 0 

Query: 10  TVVDDTYWRMVQSDTK----ELTLNYTCTTDSECTPILLDDL--------------LNNF 69
           + VD  YW + +SD      +  L+Y C T ++C PILL+ L               N+F
Sbjct: 42  SAVDGAYWCVARSDASYEALQAALDYACATGADCNPILLNGLCFLPNTIQAHASYAFNSF 101

Query: 70  FKHEVMALNSCSFVDTTTIA 71
           F+ + MA  SC F  + TIA
Sbjct: 102 FQRKAMAPGSCDFAGSATIA 121

[Close]
BLAST of MC10g1290 vs. ExPASy TrEMBL
Match: A0A0A0LND4 (X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G139290 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.14e-05
Identity = 28/80 (35.00%), Postives = 40/80 (50.00%), Query Frame = 0 

Query: 10  TVVDDTYWRMVQSDTK----ELTLNYTCTTDSECTPILLDDL--------------LNNF 69
           + VD  YW + +SD      +  L+Y C T +ECTPI+L+ L               N+F
Sbjct: 23  STVDGAYWCVARSDATYESLQAALDYACATGAECTPIMLNGLCFLPNTIQAHASYAFNSF 82

Query: 70  FKHEVMALNSCSFVDTTTIA 71
           F+ + MA  SC F  + TIA
Sbjct: 83  FQRKAMAPGSCDFAGSATIA 102

[Close]
BLAST of MC10g1290 vs. ExPASy TrEMBL
Match: A0A5A7SQ29 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G001060 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.15e-05
Identity = 29/89 (32.58%), Postives = 43/89 (48.31%), Query Frame = 0 

Query: 1   FLLLMIRSYTVVDDTYWRMVQSDTK----ELTLNYTCTTDSECTPILLDDL--------- 60
           F L  +   + VD  YW + +SD      +  ++Y C T ++CTPILL+ L         
Sbjct: 16  FFLFFLIGTSAVDGAYWCVARSDATYESLQAAIDYACATGADCTPILLNGLCFLPNTIQA 75

Query: 61  -----LNNFFKHEVMALNSCSFVDTTTIA 71
                 N+FF+ + MA  SC F  + TIA
Sbjct: 76  HASYAFNSFFQRKAMAPGSCDFGGSATIA 104

[Close]
BLAST of MC10g1290 vs. ExPASy TrEMBL
Match: A0A1S3C4M3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo OX=3656 GN=LOC103496965 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.11e-05
Identity = 29/89 (32.58%), Postives = 43/89 (48.31%), Query Frame = 0 

Query: 1   FLLLMIRSYTVVDDTYWRMVQSDTK----ELTLNYTCTTDSECTPILLDDL--------- 60
           F L  +   + VD  YW + +SD      +  ++Y C T ++CTPILL+ L         
Sbjct: 16  FFLFFLIGTSAVDGAYWCVARSDATYESLQAAIDYACATGADCTPILLNGLCFLPNTIQA 75

Query: 61  -----LNNFFKHEVMALNSCSFVDTTTIA 71
                 N+FF+ + MA  SC F  + TIA
Sbjct: 76  HASYAFNSFFQRKAMAPGSCDFGGSATIA 104

The following BLAST results are available for this feature:
BLAST of MC10g1290 vs.
Match NameE-valueIdentityDescription
BLAST of MC10g1290 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138961.22.35e-0535.00PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis sativus][more]
KAA0033304.12.39e-0532.58PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo var. makuwa] >TYK21601.1 P... [more]
KAE8651770.12.90e-0535.00hypothetical protein Csa_006265 [Cucumis sativus][more]
XP_008457240.16.42e-0532.58PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Cucumis melo][more]
XP_038875835.11.37e-0433.75PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Benincasa hispida][more]
BLAST of MC10g1290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LND41.14e-0535.00X8 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G139290 PE=4 SV=... [more]
A0A5A7SQ291.15e-0532.58PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A1S3C4M33.11e-0532.58PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Cucumis melo OX=3656 GN=LOC103496965 ... [more]
BLAST of MC10g1290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g1290.1MC10g1290.1mRNA