MC10g1182 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g1182
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	NAC transcription factor 29-like
Location	MC10: 14925513 .. 14925620 (+)
RNA-Seq Expression	MC10g1182
Synteny	MC10g1182

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAAGACCATATTGGGTACTATGAAACATTTTCATTATGAGAATGGTCAAGATTGTGGTTATTTTTCGTGGATCATGTATGAGTACTCTCTTGATCCTTCCCATCTA

mRNA sequence

GACAAGACCATATTGGGTACTATGAAACATTTTCATTATGAGAATGGTCAAGATTGTGGTTATTTTTCGTGGATCATGTATGAGTACTCTCTTGATCCTTCCCATCTA

Coding sequence (CDS)

GACAAGACCATATTGGGTACTATGAAACATTTTCATTATGAGAATGGTCAAGATTGTGGTTATTTTTCGTGGATCATGTATGAGTACTCTCTTGATCCTTCCCATCTA

Protein sequence

DKTILGTMKHFHYENGQDCGYFSWIMYEYSLDPSHL

Homology

[Close]

BLAST of MC10g1182 vs. NCBI nr
Match: XP_022159029.1 (NAC transcription factor 29-like [Momordica charantia])

HSP 1 Score: 69.3 bits (168), Expect = 2.07e-12
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 2   KTILGTMKHFHYENGQDCGYFSWIMYEYSLDPSHL 36
           KT+LGTMK FHYENGQDC  FSWIMYEYSLDPS L
Sbjct: 104 KTLLGTMKRFHYENGQDCSQFSWIMYEYSLDPSIL 138

[Close]

BLAST of MC10g1182 vs. NCBI nr
Match: XP_022145773.1 (NAC domain-containing protein 12-like [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 1.43e-11
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 2   KTILGTMKHFHYENGQDCGYFSWIMYEYSLDPSHL 36
           + +LGTMK FHYENGQDCG FSWIMYEYSLDPS L
Sbjct: 101 EILLGTMKRFHYENGQDCGPFSWIMYEYSLDPSIL 135

[Close]

BLAST of MC10g1182 vs. NCBI nr
Match: KAA0057812.1 (NAC domain-containing protein 105-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 45.8 bits (107), Expect = 5.17e-04
Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 1   DKTILGTMKHFHYENGQ-----DCG-YFSWIMYEYSLDPS 34
           D T++GT K FHYEN +     DC   +SWIMYEY+L P+
Sbjct: 100 DNTLVGTFKRFHYENSKMTKVDDCNNIYSWIMYEYTLQPN 139

[Close]

BLAST of MC10g1182 vs. NCBI nr
Match: TYJ98496.1 (NAC domain-containing protein 105-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 45.8 bits (107), Expect = 5.17e-04
Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 1   DKTILGTMKHFHYENGQ-----DCG-YFSWIMYEYSLDPS 34
           D T++GT K FHYEN +     DC   +SWIMYEY+L P+
Sbjct: 100 DNTLVGTFKRFHYENSKMTKVDDCNNIYSWIMYEYTLQPN 139

[Close]

BLAST of MC10g1182 vs. ExPASy TrEMBL
Match: A0A6J1E162 (NAC transcription factor 29-like OS=Momordica charantia OX=3673 GN=LOC111025473 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.00e-12
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 2   KTILGTMKHFHYENGQDCGYFSWIMYEYSLDPSHL 36
           KT+LGTMK FHYENGQDC  FSWIMYEYSLDPS L
Sbjct: 104 KTLLGTMKRFHYENGQDCSQFSWIMYEYSLDPSIL 138

[Close]

BLAST of MC10g1182 vs. ExPASy TrEMBL
Match: A0A6J1CWV5 (NAC domain-containing protein 12-like OS=Momordica charantia OX=3673 GN=LOC111015148 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.91e-12
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 2   KTILGTMKHFHYENGQDCGYFSWIMYEYSLDPSHL 36
           + +LGTMK FHYENGQDCG FSWIMYEYSLDPS L
Sbjct: 101 EILLGTMKRFHYENGQDCGPFSWIMYEYSLDPSIL 135

[Close]

BLAST of MC10g1182 vs. ExPASy TrEMBL
Match: A0A5A7UPM7 (NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00950 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.50e-04
Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 1   DKTILGTMKHFHYENGQ-----DCG-YFSWIMYEYSLDPS 34
           D T++GT K FHYEN +     DC   +SWIMYEY+L P+
Sbjct: 100 DNTLVGTFKRFHYENSKMTKVDDCNNIYSWIMYEYTLQPN 139

[Close]

BLAST of MC10g1182 vs. ExPASy TrEMBL
Match: A0A5D3BHG6 (NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00980 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.50e-04
Identity = 21/40 (52.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 1   DKTILGTMKHFHYENGQ-----DCG-YFSWIMYEYSLDPS 34
           D T++GT K FHYEN +     DC   +SWIMYEY+L P+
Sbjct: 100 DNTLVGTFKRFHYENSKMTKVDDCNNIYSWIMYEYTLQPN 139

The following BLAST results are available for this feature:

BLAST of MC10g1182 vs.


Match Name	E-value	Identity	Description

BLAST of MC10g1182 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159029.1	2.07e-12	85.71	NAC transcription factor 29-like [Momordica charantia]	[more]
XP_022145773.1	1.43e-11	82.86	NAC domain-containing protein 12-like [Momordica charantia]	[more]
KAA0057812.1	5.17e-04	52.50	NAC domain-containing protein 105-like protein [Cucumis melo var. makuwa]	[more]
TYJ98496.1	5.17e-04	52.50	NAC domain-containing protein 105-like protein [Cucumis melo var. makuwa]	[more]

BLAST of MC10g1182 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E162	1.00e-12	85.71	NAC transcription factor 29-like OS=Momordica charantia OX=3673 GN=LOC111025473 ...	[more]
A0A6J1CWV5	6.91e-12	82.86	NAC domain-containing protein 12-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A5A7UPM7	2.50e-04	52.50	NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5D3BHG6	2.50e-04	52.50	NAC domain-containing protein 105-like protein OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of MC10g1182 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g1182.1	MC10g1182.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding