MC10g1056 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g1056
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionDUF4228 domain protein
LocationMC10: 10616774 .. 10616950 (+)
RNA-Seq ExpressionMC10g1056
SyntenyMC10g1056
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGGAGGTAAAGATAAGAATCACAAAGAGAGAGTTGGAGAAGTTATTAAGAAAGGTGGACGTGGAGGAGCTCCCGGTAACGGAGCTGTTATCGCAGTTGATCGACGTCGGAGATGCGTTCGAGAGTACTCACCGGAGATCGTGGCGGCCTTCTCTGCAAACTATTCATGAGCTGAAC

mRNA sequence

ACGGAGGTAAAGATAAGAATCACAAAGAGAGAGTTGGAGAAGTTATTAAGAAAGGTGGACGTGGAGGAGCTCCCGGTAACGGAGCTGTTATCGCAGTTGATCGACGTCGGAGATGCGTTCGAGAGTACTCACCGGAGATCGTGGCGGCCTTCTCTGCAAACTATTCATGAGCTGAAC

Coding sequence (CDS)

ACGGAGGTAAAGATAAGAATCACAAAGAGAGAGTTGGAGAAGTTATTAAGAAAGGTGGACGTGGAGGAGCTCCCGGTAACGGAGCTGTTATCGCAGTTGATCGACGTCGGAGATGCGTTCGAGAGTACTCACCGGAGATCGTGGCGGCCTTCTCTGCAAACTATTCATGAGCTGAAC

Protein sequence

TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN
Homology
BLAST of MC10g1056 vs. NCBI nr
Match: XP_022151029.1 (uncharacterized protein LOC111019048 [Momordica charantia])

HSP 1 Score: 116 bits (290), Expect = 5.66e-32
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1   TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 59
           TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN
Sbjct: 49  TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 107

BLAST of MC10g1056 vs. NCBI nr
Match: XP_038904231.1 (uncharacterized protein LOC120090574 [Benincasa hispida])

HSP 1 Score: 104 bits (260), Expect = 1.93e-27
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = 0

Query: 1   TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 59
           TE+KIRITKRELEKLL KVDVEELPVTELLSQLIDVGDAFESTH+RSWRPSLQ+I E+N
Sbjct: 46  TELKIRITKRELEKLLSKVDVEELPVTELLSQLIDVGDAFESTHQRSWRPSLQSIPEVN 104

BLAST of MC10g1056 vs. NCBI nr
Match: XP_031739098.1 (uncharacterized protein LOC116402843 [Cucumis sativus])

HSP 1 Score: 100 bits (250), Expect = 6.63e-26
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1   TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 59
           TE+KIRITKRELEKLL KVDVEELPVTELLS+LIDVGD FESTH+RSWRPSLQ+I E+N
Sbjct: 47  TELKIRITKRELEKLLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

BLAST of MC10g1056 vs. NCBI nr
Match: KAA0033991.1 (DUF4228 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 5.20e-25
Identity = 49/59 (83.05%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1  TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 59
          TE+KIRITK+ELEKLL KVD+EELPV ELLS+LIDVGDAFESTHRRSW+PSLQ+I E+N
Sbjct: 33 TELKIRITKKELEKLLCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 91

BLAST of MC10g1056 vs. NCBI nr
Match: XP_008463409.1 (PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo] >TYK02554.1 DUF4228 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 7.51e-25
Identity = 49/59 (83.05%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1   TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 59
           TE+KIRITK+ELEKLL KVD+EELPV ELLS+LIDVGDAFESTHRRSW+PSLQ+I E+N
Sbjct: 46  TELKIRITKKELEKLLCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

BLAST of MC10g1056 vs. ExPASy TrEMBL
Match: A0A6J1DBT0 (uncharacterized protein LOC111019048 OS=Momordica charantia OX=3673 GN=LOC111019048 PE=4 SV=1)

HSP 1 Score: 116 bits (290), Expect = 2.74e-32
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0

Query: 1   TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 59
           TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN
Sbjct: 49  TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 107

BLAST of MC10g1056 vs. ExPASy TrEMBL
Match: A0A0A0L2D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076560 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 3.21e-26
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1   TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 59
           TE+KIRITKRELEKLL KVDVEELPVTELLS+LIDVGD FESTH+RSWRPSLQ+I E+N
Sbjct: 47  TELKIRITKRELEKLLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

BLAST of MC10g1056 vs. ExPASy TrEMBL
Match: A0A5A7SX05 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00540 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.52e-25
Identity = 49/59 (83.05%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1  TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 59
          TE+KIRITK+ELEKLL KVD+EELPV ELLS+LIDVGDAFESTHRRSW+PSLQ+I E+N
Sbjct: 33 TELKIRITKKELEKLLCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 91

BLAST of MC10g1056 vs. ExPASy TrEMBL
Match: A0A5D3BTQ9 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00050 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.63e-25
Identity = 49/59 (83.05%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1   TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 59
           TE+KIRITK+ELEKLL KVD+EELPV ELLS+LIDVGDAFESTHRRSW+PSLQ+I E+N
Sbjct: 46  TELKIRITKKELEKLLCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

BLAST of MC10g1056 vs. ExPASy TrEMBL
Match: A0A1S3CJ77 (uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.63e-25
Identity = 49/59 (83.05%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1   TEVKIRITKRELEKLLRKVDVEELPVTELLSQLIDVGDAFESTHRRSWRPSLQTIHELN 59
           TE+KIRITK+ELEKLL KVD+EELPV ELLS+LIDVGDAFESTHRRSW+PSLQ+I E+N
Sbjct: 46  TELKIRITKKELEKLLCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

BLAST of MC10g1056 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 2.8e-06
Identity = 27/65 (41.54%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 2   EVKIRITKRELEKLLRKVDVEELPVTELLSQLI-DVGDAF------ESTHRRSWRPSLQT 60
           E+KIRITK+ELE L+R + ++ L   E+LS+LI + GD         + H + W+P LQ+
Sbjct: 65  EIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNHHQPWKPVLQS 124

BLAST of MC10g1056 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 40.8 bits (94), Expect = 4.4e-04
Identity = 23/60 (38.33%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 2   EVKIRITKRELEKLLRKVDVEELPVTE--LLSQLIDVGDAFESTHRRSWRPSLQTIHELN 60
           E+KIR+TK++L  LL KV+V +L   +      +++     E+  +R WRP LQ+I E+N
Sbjct: 56  EIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPILNNRGYEEANQQRLWRPVLQSIPEVN 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022151029.15.66e-32100.00uncharacterized protein LOC111019048 [Momordica charantia][more]
XP_038904231.11.93e-2789.83uncharacterized protein LOC120090574 [Benincasa hispida][more]
XP_031739098.16.63e-2686.44uncharacterized protein LOC116402843 [Cucumis sativus][more]
KAA0033991.15.20e-2583.05DUF4228 domain protein [Cucumis melo var. makuwa][more]
XP_008463409.17.51e-2583.05PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo] >TYK02554.1 DUF42... [more]
Match NameE-valueIdentityDescription
A0A6J1DBT02.74e-32100.00uncharacterized protein LOC111019048 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A0A0L2D83.21e-2686.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076560 PE=4 SV=1[more]
A0A5A7SX052.52e-2583.05DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4... [more]
A0A5D3BTQ93.63e-2583.05DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9... [more]
A0A1S3CJ773.63e-2583.05uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=... [more]
Match NameE-valueIdentityDescription
AT4G21920.12.8e-0641.54unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT3G20340.14.4e-0438.33Expression of the gene is downregulated in the presence of paraquat, an inducer ... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33647:SF5OS01G0793900 PROTEINcoord: 1..57
NoneNo IPR availablePANTHERPTHR33647OS01G0793900 PROTEINcoord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g1056.1MC10g1056.1mRNA