MC10g1054 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g1054
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionreactive Intermediate Deaminase A, chloroplastic-like
LocationMC10: 10579225 .. 10579317 (+)
RNA-Seq ExpressionMC10g1054
SyntenyMC10g1054
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCACACCATGCTCCTCCAGCTCGGTCGACATTTGCGGTGGGGGCATTGCCCAAAAATGCTAAGATCGAAATCGATGCAATTGCCGTGATT

mRNA sequence

TTTTCACACCATGCTCCTCCAGCTCGGTCGACATTTGCGGTGGGGGCATTGCCCAAAAATGCTAAGATCGAAATCGATGCAATTGCCGTGATT

Coding sequence (CDS)

TTTTCACACCATGCTCCTCCAGCTCGGTCGACATTTGCGGTGGGGGCATTGCCCAAAAATGCTAAGATCGAAATCGATGCAATTGCCGTGATT

Protein sequence

FSHHAPPARSTFAVGALPKNAKIEIDAIAVI
Homology
BLAST of MC10g1054 vs. NCBI nr
Match: XP_022151006.1 (reactive Intermediate Deaminase A, chloroplastic-like [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 4.08e-11
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0

Query: 1   FSHHAPPARSTFAVGALPKNAKIEIDAIAVI 31
           FSHHAPPARSTFAVGALPKNAKIEIDAIAVI
Sbjct: 137 FSHHAPPARSTFAVGALPKNAKIEIDAIAVI 167

BLAST of MC10g1054 vs. NCBI nr
Match: XP_023552960.1 (2-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 49.3 bits (116), Expect = 1.44e-05
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 1   FSHHAPPARSTFAVGALPKNAKIEIDAIAVI 31
           FS +  PARSTF  GALPKNAKIEIDAIAV+
Sbjct: 155 FSEYPAPARSTFQAGALPKNAKIEIDAIAVV 185

BLAST of MC10g1054 vs. NCBI nr
Match: XP_022985268.1 (2-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita maxima])

HSP 1 Score: 49.3 bits (116), Expect = 1.44e-05
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 1   FSHHAPPARSTFAVGALPKNAKIEIDAIAVI 31
           FS +  PARSTF  GALPKNAKIEIDAIAV+
Sbjct: 155 FSEYPAPARSTFQAGALPKNAKIEIDAIAVV 185

BLAST of MC10g1054 vs. NCBI nr
Match: KAA0033986.1 (ribonuclease UK114-like [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 1.95e-05
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 1   FSHHAPPARSTFAVGALPKNAKIEIDAIAVI 31
           F +   PARSTFA GALPKNAKIEIDAIAV+
Sbjct: 101 FPNSPAPARSTFAAGALPKNAKIEIDAIAVL 131

BLAST of MC10g1054 vs. NCBI nr
Match: XP_008463411.1 (PREDICTED: ribonuclease UK114-like [Cucumis melo] >TYK02559.1 ribonuclease UK114-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 48.1 bits (113), Expect = 3.98e-05
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 1   FSHHAPPARSTFAVGALPKNAKIEIDAIAVI 31
           F +   PARSTFA GALPKNAKIEIDAIAV+
Sbjct: 157 FPNSPAPARSTFAAGALPKNAKIEIDAIAVL 187

BLAST of MC10g1054 vs. ExPASy TrEMBL
Match: A0A6J1DD88 (reactive Intermediate Deaminase A, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111019026 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.98e-11
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0

Query: 1   FSHHAPPARSTFAVGALPKNAKIEIDAIAVI 31
           FSHHAPPARSTFAVGALPKNAKIEIDAIAVI
Sbjct: 137 FSHHAPPARSTFAVGALPKNAKIEIDAIAVI 167

BLAST of MC10g1054 vs. ExPASy TrEMBL
Match: A0A6J1JD57 (2-iminobutanoate/2-iminopropanoate deaminase-like OS=Cucurbita maxima OX=3661 GN=LOC111483310 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.97e-06
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 1   FSHHAPPARSTFAVGALPKNAKIEIDAIAVI 31
           FS +  PARSTF  GALPKNAKIEIDAIAV+
Sbjct: 155 FSEYPAPARSTFQAGALPKNAKIEIDAIAVV 185

BLAST of MC10g1054 vs. ExPASy TrEMBL
Match: A0A5A7SVJ7 (Ribonuclease UK114-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00490 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.44e-06
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 1   FSHHAPPARSTFAVGALPKNAKIEIDAIAVI 31
           F +   PARSTFA GALPKNAKIEIDAIAV+
Sbjct: 101 FPNSPAPARSTFAAGALPKNAKIEIDAIAVL 131

BLAST of MC10g1054 vs. ExPASy TrEMBL
Match: A0RZC7 (Plastid-lipid associated protein OS=Cucumis sativus OX=3659 GN=CHRD PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.92e-05
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 1   FSHHAPPARSTFAVGALPKNAKIEIDAIAVI 31
           F +   PARSTFA GALPKNAKIEIDAIAV+
Sbjct: 157 FPNSPAPARSTFAAGALPKNAKIEIDAIAVL 187

BLAST of MC10g1054 vs. ExPASy TrEMBL
Match: A0A5D3BWQ5 (Ribonuclease UK114-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00100 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.92e-05
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 0

Query: 1   FSHHAPPARSTFAVGALPKNAKIEIDAIAVI 31
           F +   PARSTFA GALPKNAKIEIDAIAV+
Sbjct: 157 FPNSPAPARSTFAAGALPKNAKIEIDAIAVL 187

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022151006.14.08e-11100.00reactive Intermediate Deaminase A, chloroplastic-like [Momordica charantia][more]
XP_023552960.11.44e-0577.422-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita pepo subsp. pepo][more]
XP_022985268.11.44e-0577.422-iminobutanoate/2-iminopropanoate deaminase-like [Cucurbita maxima][more]
KAA0033986.11.95e-0577.42ribonuclease UK114-like [Cucumis melo var. makuwa][more]
XP_008463411.13.98e-0577.42PREDICTED: ribonuclease UK114-like [Cucumis melo] >TYK02559.1 ribonuclease UK114... [more]
Match NameE-valueIdentityDescription
A0A6J1DD881.98e-11100.00reactive Intermediate Deaminase A, chloroplastic-like OS=Momordica charantia OX=... [more]
A0A6J1JD576.97e-0677.422-iminobutanoate/2-iminopropanoate deaminase-like OS=Cucurbita maxima OX=3661 GN... [more]
A0A5A7SVJ79.44e-0677.42Ribonuclease UK114-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0RZC71.92e-0577.42Plastid-lipid associated protein OS=Cucumis sativus OX=3659 GN=CHRD PE=2 SV=1[more]
A0A5D3BWQ51.92e-0577.42Ribonuclease UK114-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006175YjgF/YER057c/UK114 familyPFAMPF01042Ribonuc_L-PSPcoord: 2..31
e-value: 3.0E-7
score: 30.5
IPR035959RutC-like superfamilyGENE3D3.30.1330.40coord: 1..31
e-value: 1.1E-7
score: 33.6
IPR035959RutC-like superfamilySUPERFAMILY55298YjgF-likecoord: 3..31
IPR019897RidA, conserved sitePROSITEPS01094UPF0076coord: 7..25
NoneNo IPR availableCDDcd00448YjgF_YER057c_UK114_familycoord: 1..29
e-value: 1.8487E-8
score: 42.9307

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g1054.1MC10g1054.1mRNA