MC10g0942 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g0942
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionfibroin heavy chain-like
LocationMC10: 8135616 .. 8135960 (+)
RNA-Seq ExpressionMC10g0942
SyntenyMC10g0942
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GACCCCAAGGGAGCCATGGGAGGAGGACTCAGCGGCGGCAGGAGAGGTGTTGATCCGATCATTAATGGATTTGGAGTTGGAGTCGGAGTTGGGGTCGGGTACAGGCCGGGATACGGTGGGCCGGGGGGGTACTGGTCTGGCCCAGGATTTGAGGGGCCGAACAGCGAGTGCATGTTGGGCTATGTTTGTCCATCCAGTGATCGTAGGGGATGCAATGGCTTTTCTTATGAAGGTTGCCGATCTTACGGCTTTTATCCACTGACTTCAATTGACCACCACGAAGTAGAAATCAATTGGGCCACATCCAAGCCCGTTGAAACGGCCCAATTTGGCAATTCTGGACCC

mRNA sequence

GACCCCAAGGGAGCCATGGGAGGAGGACTCAGCGGCGGCAGGAGAGGTGTTGATCCGATCATTAATGGATTTGGAGTTGGAGTCGGAGTTGGGGTCGGGTACAGGCCGGGATACGGTGGGCCGGGGGGGTACTGGTCTGGCCCAGGATTTGAGGGGCCGAACAGCGAGTGCATGTTGGGCTATGTTTGTCCATCCAGTGATCGTAGGGGATGCAATGGCTTTTCTTATGAAGGTTGCCGATCTTACGGCTTTTATCCACTGACTTCAATTGACCACCACGAAGTAGAAATCAATTGGGCCACATCCAAGCCCGTTGAAACGGCCCAATTTGGCAATTCTGGACCC

Coding sequence (CDS)

GACCCCAAGGGAGCCATGGGAGGAGGACTCAGCGGCGGCAGGAGAGGTGTTGATCCGATCATTAATGGATTTGGAGTTGGAGTCGGAGTTGGGGTCGGGTACAGGCCGGGATACGGTGGGCCGGGGGGGTACTGGTCTGGCCCAGGATTTGAGGGGCCGAACAGCGAGTGCATGTTGGGCTATGTTTGTCCATCCAGTGATCGTAGGGGATGCAATGGCTTTTCTTATGAAGGTTGCCGATCTTACGGCTTTTATCCACTGACTTCAATTGACCACCACGAAGTAGAAATCAATTGGGCCACATCCAAGCCCGTTGAAACGGCCCAATTTGGCAATTCTGGACCC

Protein sequence

DPKGAMGGGLSGGRRGVDPIINGFGVGVGVGVGYRPGYGGPGGYWSGPGFEGPNSECMLGYVCPSSDRRGCNGFSYEGCRSYGFYPLTSIDHHEVEINWATSKPVETAQFGNSGP
Homology
BLAST of MC10g0942 vs. NCBI nr
Match: XP_023551824.1 (fibroin heavy chain-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108 bits (270), Expect = 9.29e-27
Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 0

Query: 14  RRGVDPIINGFGVGVGVGVGYRPGYG---GPGGYWSGPGF--EGPNSECMLGYVCPSSDR 73
           RR VDP+ING G+G+GV +GYR G+    G G +W GPG    G ++EC LGYVCP+  R
Sbjct: 103 RRDVDPMINGLGLGLGVDIGYRSGFRAGVGGGEHWFGPGIGGRGVSNECTLGYVCPTYGR 162

Query: 74  RGCNGFSYEGCRSYGFYPL-TSIDHHEVEINWAT-SKPVETAQFG 111
           RGC+ FSY  C SYGF+PL  S+  HEVE+ WA  SKP  T Q G
Sbjct: 163 RGCDKFSYGNCDSYGFHPLMASMQLHEVEMKWAKGSKPAATPQNG 207

BLAST of MC10g0942 vs. NCBI nr
Match: XP_023551823.1 (fibroin heavy chain-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108 bits (270), Expect = 2.69e-26
Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 0

Query: 14  RRGVDPIINGFGVGVGVGVGYRPGYG---GPGGYWSGPGF--EGPNSECMLGYVCPSSDR 73
           RR VDP+ING G+G+GV +GYR G+    G G +W GPG    G ++EC LGYVCP+  R
Sbjct: 149 RRDVDPMINGLGLGLGVDIGYRSGFRAGVGGGEHWFGPGIGGRGVSNECTLGYVCPTYGR 208

Query: 74  RGCNGFSYEGCRSYGFYPL-TSIDHHEVEINWAT-SKPVETAQFG 111
           RGC+ FSY  C SYGF+PL  S+  HEVE+ WA  SKP  T Q G
Sbjct: 209 RGCDKFSYGNCDSYGFHPLMASMQLHEVEMKWAKGSKPAATPQNG 253

BLAST of MC10g0942 vs. NCBI nr
Match: XP_022929340.1 (fibroin heavy chain-like [Cucurbita moschata])

HSP 1 Score: 106 bits (264), Expect = 1.73e-25
Identity = 57/107 (53.27%), Postives = 71/107 (66.36%), Query Frame = 0

Query: 14  RRGVDPIINGFGVGVGVGVGYRPGYG---GPGGYWSGPGFE----GPNSECMLGYVCPSS 73
           RR VDP+ING G+G+GV +GYR G+    G G +W GPG      G ++EC LGYVCP+ 
Sbjct: 138 RRDVDPMINGLGLGLGVDIGYRSGFRAGLGGGEHWFGPGIGIGGGGVSNECTLGYVCPTY 197

Query: 74  DRRGCNGFSYEGCRSYGFYPLTSIDH-HEVEINWAT-SKPVETAQFG 111
            RRGC+ FSY  C +YGF+PL +  H HEVE+ WA  SKP  T Q G
Sbjct: 198 GRRGCDKFSYGNCDTYGFHPLMASMHLHEVEMKWAKGSKPAATPQNG 244

BLAST of MC10g0942 vs. NCBI nr
Match: KAG6577377.1 (hypothetical protein SDJN03_24951, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106 bits (264), Expect = 4.38e-25
Identity = 57/107 (53.27%), Postives = 71/107 (66.36%), Query Frame = 0

Query: 14  RRGVDPIINGFGVGVGVGVGYRPGYG---GPGGYWSGPGFE----GPNSECMLGYVCPSS 73
           RR VDP+ING G+G+GV +GYR G+    G G +W GPG      G ++EC LGYVCP+ 
Sbjct: 184 RRDVDPMINGLGLGLGVDIGYRSGFRAGLGGGEHWFGPGIGIGGGGVSNECTLGYVCPTY 243

Query: 74  DRRGCNGFSYEGCRSYGFYPLTSIDH-HEVEINWAT-SKPVETAQFG 111
            RRGC+ FSY  C +YGF+PL +  H HEVE+ WA  SKP  T Q G
Sbjct: 244 GRRGCDKFSYGNCDTYGFHPLMASMHLHEVEMKWAKGSKPAATPQNG 290

BLAST of MC10g0942 vs. NCBI nr
Match: KGN56231.1 (hypothetical protein Csa_011503 [Cucumis sativus])

HSP 1 Score: 101 bits (252), Expect = 8.75e-24
Identity = 58/115 (50.43%), Postives = 69/115 (60.00%), Query Frame = 0

Query: 13  GRRGVDPIINGFGVGVGVGV---------GYRPGYGGPGGYWSGPG--FEGPNSECMLGY 72
           G +GVDPI+ G GVGVGV +         G RPG GG    W GPG   + P + CMLGY
Sbjct: 118 GPKGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGG----WYGPGPIIQEPYNNCMLGY 177

Query: 73  VCPSSDRRGCNGFSYEGCRSYGFYPLT-SIDHHEVEINWATSKPVETAQFGNSGP 115
           VCP++    C    Y  C SY F PL+ S + H+V+INWA SK VETAQ G SGP
Sbjct: 178 VCPTNRPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSKSVETAQHGESGP 228

BLAST of MC10g0942 vs. ExPASy TrEMBL
Match: A0A6J1EU53 (fibroin heavy chain-like OS=Cucurbita moschata OX=3662 GN=LOC111435943 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 8.39e-26
Identity = 57/107 (53.27%), Postives = 71/107 (66.36%), Query Frame = 0

Query: 14  RRGVDPIINGFGVGVGVGVGYRPGYG---GPGGYWSGPGFE----GPNSECMLGYVCPSS 73
           RR VDP+ING G+G+GV +GYR G+    G G +W GPG      G ++EC LGYVCP+ 
Sbjct: 138 RRDVDPMINGLGLGLGVDIGYRSGFRAGLGGGEHWFGPGIGIGGGGVSNECTLGYVCPTY 197

Query: 74  DRRGCNGFSYEGCRSYGFYPLTSIDH-HEVEINWAT-SKPVETAQFG 111
            RRGC+ FSY  C +YGF+PL +  H HEVE+ WA  SKP  T Q G
Sbjct: 198 GRRGCDKFSYGNCDTYGFHPLMASMHLHEVEMKWAKGSKPAATPQNG 244

BLAST of MC10g0942 vs. ExPASy TrEMBL
Match: A0A0A0L7X7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104850 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 4.23e-24
Identity = 58/115 (50.43%), Postives = 69/115 (60.00%), Query Frame = 0

Query: 13  GRRGVDPIINGFGVGVGVGV---------GYRPGYGGPGGYWSGPG--FEGPNSECMLGY 72
           G +GVDPI+ G GVGVGV +         G RPG GG    W GPG   + P + CMLGY
Sbjct: 118 GPKGVDPIVTGLGVGVGVNLPPIFGGPKMGIRPGPGG----WYGPGPIIQEPYNNCMLGY 177

Query: 73  VCPSSDRRGCNGFSYEGCRSYGFYPLT-SIDHHEVEINWATSKPVETAQFGNSGP 115
           VCP++    C    Y  C SY F PL+ S + H+V+INWA SK VETAQ G SGP
Sbjct: 178 VCPTNRPWACGKVGYGLCESYNFRPLSASTELHDVKINWAKSKSVETAQHGESGP 228

BLAST of MC10g0942 vs. ExPASy TrEMBL
Match: A0A5A7V4J6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00010 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.11e-21
Identity = 57/118 (48.31%), Postives = 70/118 (59.32%), Query Frame = 0

Query: 9   GLSGGRRGVDPIINGFGVGVGVG---------VGYRPGYGGPGGYWS-GPGFEGPNSECM 68
           G+  G R     +NGFGVGVGV          +G +PG   PGG++  GP  + P   CM
Sbjct: 100 GIEAGPRAGPKGVNGFGVGVGVDLPPVFGGPKIGLKPG---PGGWYRPGPIIQEPYGNCM 159

Query: 69  LGYVCPSSDRRGCNGFSYEGCRSYGFYPLT-SIDHHEVEINWATSKPVETAQFGNSGP 115
           LGYVCP+     C+ F+Y  C SY F+PL+ S D HEV+INWA SKP  TAQ G SGP
Sbjct: 160 LGYVCPNRPW-ACSKFAYGLCDSYNFHPLSASTDLHEVKINWAKSKPDATAQHGESGP 213

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023551824.19.29e-2755.24fibroin heavy chain-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023551823.12.69e-2655.24fibroin heavy chain-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022929340.11.73e-2553.27fibroin heavy chain-like [Cucurbita moschata][more]
KAG6577377.14.38e-2553.27hypothetical protein SDJN03_24951, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN56231.18.75e-2450.43hypothetical protein Csa_011503 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1EU538.39e-2653.27fibroin heavy chain-like OS=Cucurbita moschata OX=3662 GN=LOC111435943 PE=4 SV=1[more]
A0A0A0L7X74.23e-2450.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104850 PE=4 SV=1[more]
A0A5A7V4J64.11e-2148.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g0942.1MC10g0942.1mRNA