Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: utr5polypeptideCDSutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGAAAATAATCAAGTTCGCGTACCACTAACAATGGCCGCTACGAGCATCGGAGCTCTGTGGAGTCTCAGAAGAGCAGCTCAAGCTTCGAGTTTCCGCATTCCCCTTGCCCTAAACCTCTCCTTCCACCAGGCCCGTTTTCCTCCTTCGCCGTCTTCTCCTCCGGGGTCGTCAGGTCTCGATTCCCTTTCTTCTCCATTGTTTCTTCTTCTACAATGCAAAATCCTCTGAATGCAATTACGAAACTATGAATTGTTATTGATTAGTAGGCGCATTTTTTCTCCAATTGCCCTGTGGTAGCTCACTAAGATCGAAATTGTAGAACAATTAGTTTTAGTTCGGGAGATAATAACCTTTGGATTGGGAATCAATTGGAAGTAAATTTCCATTTTTTTAAACTTATCTATGATTGCTTAAATTCCATTTTGAATTAATGGCATAAAGGGTGAGCATGATTGACGATTTCCATAATGTTCCTTGGTCTCTACTGCATCAAGTGCTTCTGCAGCGTATCTGCTTTTGTAGTTTTATTTTTACTCTAGGGTCTCATTCAATTGTGAAAGAGCACTTGAGCTTGCAGGTACCCAAGGGGTGCCTATGAGCTATGGGGTTCAAGCTTCCAAGTTAAAAACTTAATAATTTAAAGTCCACGTTGTCTCTTCGAGTCGGTCTTAATAGTGGCCAAAACTTCCCTAGAACGACATGAGTATAATGCAAGGAGTGAGACCTTTTGATACCTTAGATATCACAAAAAAAAAAACATAACAAATTATGAGCAACGTAACCTTCGTTTGGCAAAAAGTACTTCCTGCCTGTCTCCTACACCTATCAAATCCTTGAATTATTTCATTGTGGAAATGTAGTAAGAATGCAATTTATAACTCTAAAAATAATACATATTGTACGTGGAATGGGATAAAGGCTCATTTGTACTTCTTCTCGACACAGTCCTTTATGGTAACCCAAATATTGTTACTTAAATGATTCAATATTTGCATGTTAAGAGTCCACCCTATACTGTTTCAGGAATATGTCAATTAGTGCAAGCTGTAAAAGGAGACATTGATGTTTTACTCAACGGAGTAGGAGATAAAGGTGTTATTGTAGATGTGAAGCATATTCTTGTGATGGTATTGGTTATCAAAAGAAATCCTTCCTTTCCCTTCTAATTTGATGAATTTTGTATAAAAACAGCAATACGATAACCCTTTTGTCTCTTAGTTGTGAGGGATGATTCTGATTCTTCACTCTTTTGGTTTCATTTAGGCCAAACGTTCATTGTCAAGACGAGAAGTTCTCCATACGAACTTTCTCACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGTGAATATAAAAGTTTTGCTTCTCTCTTTTTTATTTTTTAAGTTGGGGCTTGGGTTTATGAATCTAAGACCTCTTGCTGATACCACACTTCTTTCAAGTTGACCAAATGTTTAGGCAGAGCGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACATAATTTCGGCATTGAGGTATCTTTCTTTAATCTTCTGCATTAATCCATTTTATCTTAGCTTTGGAAAAATCAGTTGTTCTTTTGTTCTTTCTTCTTCTTAATATAGTTTTCCTTCCCAGTATCACAGGAAATTTTACGTTTCACCCTTGCTCACACGGGGACTTCCTTGGATCAATTCTTGGTACAGGAATTGCTAGGGAAAAGCTTGGCGATATCATACTCCAGGTATCATTGCATTCAGTATTTACTTTGTATCCATTTGAAGTATAGTTACAACTGTCTGTTCTTATTCTTTGTGCACATTGCTACTTTCGGTTTCTTTTAAATGACTTGTGTTCTTTGTTTGAATTTGACTCATCAAGTATTATAAATGCATTACACTTTGGCTCTCTGCATTTGGTTCTATAATGAAAAAGTAGAATTATCTTTAACAAATCCCAAAAACGGATGGTAAAATTTGTGTTTCGGGTTATCATGCTCTGCCACCTGACTGTGTCCAGAACTTTGATCTGAAATGCTACTTCTTAAAATCTATGTTTCACTCCATCCACGTGGAACAAAACTTTATGAAAAAAATTAAGCTACAATGTCTAATTCCTTGCCTTGTCTATATGACTATATCCACAAGTACCTTTGTGTATATCTTTTAGATTTTTTATCCAAAGCAGCAACAAGGTTATCGTGAGCCATGTTTCTTTTATTCTCTTATTGTTACCATATTTTCAGGGAGAAAATGGAGCTCAAGTAGTACTTGTTCCAGAACTCGTCGACTTCCTTATATCGTCACTGCGCAAGGTAGTGTCATTGTCCTGGGTGATTGCTTCTAACACGATGACACAAAAATTAACACAAGAATGAAATATGTTCTTCCTCTGGGTGCATTTCTCGTGTGTTTAAACTATAAATACATATTTTGGTGAAGCCTACATAGCCTAATAGATACTCAAACTATTTGTATATTTGCTTCATTGATATCTTTATTTGTTATCTTTTTTTTTTTAAATGTAATTATTTGTTATGGCATTCTTAATTTCAGGTTGGTAATGTCACAGTTTCTTGTACGAGGATTCCGTTGACAGCTCTTGATTATGAACCACCAAAGTATGAAGTTATATCAGTGATTTTCATATTGGTTTCCATGTTTATTTTGATGTACTATTTTATTTTCTCCTTTGCAGGACTAAGACATTTAACACCATTGAGGCATCTCTTAGGGTGGATGCTATAGCAAGTGCTGGGTTCAAGATTTCACGGTCCAAACTAGTGGATTTAATCAGGTACAACGGCTTCTACTAACCAACTGATCTTTCACATTGCTATCATTTGTAGAATAGAATGAGTCAATCATGAACTTTGGTATCTTATTGAAAAAATGGTGATGTTTCTCCATTGATCAAGTATTTCAATTTTTAGGAAATATCATGATCATCCAAGAAGAAGGGTTTCAATTTTTTTTTTCAAATGAATGATTCGAAGAATATTTTCTAAGTTTCTACCCTGAAAAATAAAGGAATAATTTATAACAATTTTTGGTTTTTGTGTTGTTGATTCCTAAGCATAGTGTTTCCTCTCCTCTACTGCCTATTTTAGTGGAGCATAGTTGTCTTAATCATCGGTTACACCTTTTGCTCAATATTAAAATGGGCAATTAAAACATATGAAGTTACATTAAACTGGGTATACACAACAAACTCTCATAATAATGTAATGCTTTGCTTATATTCTTTGTTGAATTACGGCATCGAAGTATTTGTAAGTGGTTAAAACGTGCCATCATATGGTAGTGAATGATAATAGATAACTTTCTCAAAGTTTCTGGGGAATAGGGTGTAGCAATGTATTATCTTCCATTTCTTTTGTGAAAGTACATGAACCTGAAATTGTTATATGAGCAGCAGTGGTGATGTTCGTGTCAATTGGACACCGGTTACAAAAAATGGAACCACACTGAAGACTGGTGATGTTGTTTCTGTTAGTGGTAAAGGCAGACTAAAGGTGAGCTTTTCAGCTCAATGGAAACTGAAACTAGTTGCACCGAGTTTATATATTTGCTAACTTAGCATTCCTGACTTCTGGTTATTTTCCTCATATTCAGATTGGAGAAATAAATTCTACGAAAAAAGGGAAATTTTCTGTTGAGCTTATCAGGTACGTGTAAGCTCTGGCGTTATTGGATCGTTTCGAGTTGAACCAAGTAAGATATCAGTAGCAAAAGCTCCCTCATGAACATCATGATTCCTTCTTTGGGAAGAAGGAAGGTAAGTCACTGTTCAACATGACACGAACCTGATTGTACATAAAATCTGAACATCCATTCATCCATTCTTAAAAATTTTGCATTTGGAAAATTTATCTCTTCACATTTCTATGCCGGGAAATATTGGTTCTTTTGTCTTTGGGATGTGTGATTTTATGTCCCTGGAATGGAATTTATTATGCAAATTAATGTTGTCAAAGGGAGGGAATGTAAATACAAAAGTTATAGCTTCGCAGTAACTATTTGTAGATCCAATGATATTTGACCTATTTCCATCCCGTAATATGCAGTTATTAATGTATATTGGTTGGTGTACAACTATCAATTTTTGTTAATTACTGATTTAGTTTTCAA
mRNA sequence
GCAGAAAATAATCAAGTTCGCGTACCACTAACAATGGCCGCTACGAGCATCGGAGCTCTGTGGAGTCTCAGAAGAGCAGCTCAAGCTTCGAGTTTCCGCATTCCCCTTGCCCTAAACCTCTCCTTCCACCAGGCCCGTTTTCCTCCTTCGCCGTCTTCTCCTCCGGGGTCGTCAGGAATATGTCAATTAGTGCAAGCTGTAAAAGGAGACATTGATGTTTTACTCAACGGAGTAGGAGATAAAGGTGTTATTGTAGATGTGAAGCATATTCTTGTGATGGCCAAACGTTCATTGTCAAGACGAGAAGTTCTCCATACGAACTTTCTCACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACATAATTTCGGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGCTCACACGGGGACTTCCTTGGATCAATTCTTGGTACAGGAATTGCTAGGGAAAAGCTTGGCGATATCATACTCCAGGGAGAAAATGGAGCTCAAGTAGTACTTGTTCCAGAACTCGTCGACTTCCTTATATCGTCACTGCGCAAGGTTGGTAATGTCACAGTTTCTTGTACGAGGATTCCGTTGACAGCTCTTGATTATGAACCACCAAAGACTAAGACATTTAACACCATTGAGGCATCTCTTAGGGTGGATGCTATAGCAAGTGCTGGGTTCAAGATTTCACGGTCCAAACTAGTGGATTTAATCAGCAGTGGTGATGTTCGTGTCAATTGGACACCGGTTACAAAAAATGGAACCACACTGAAGACTGGTGATGTTGTTTCTGTTAGTGGTAAAGGCAGACTAAAGATTGGAGAAATAAATTCTACGAAAAAAGGGAAATTTTCTGTTGAGCTTATCAGGTACGTGTAAGCTCTGGCGTTATTGGATCGTTTCGAGTTGAACCAAGTAAGATATCAGTAGCAAAAGCTCCCTCATGAACATCATGATTCCTTCTTTGGGAAGAAGGAAGGTAAGTCACTGTTCAACATGACACGAACCTGATTGTACATAAAATCTGAACATCCATTCATCCATTCTTAAAAATTTTGCATTTGGAAAATTTATCTCTTCACATTTCTATGCCGGGAAATATTGGTTCTTTTGTCTTTGGGATGTGTGATTTTATGTCCCTGGAATGGAATTTATTATGCAAATTAATGTTGTCAAAGGGAGGGAATGTAAATACAAAAGTTATAGCTTCGCAGTAACTATTTGTAGATCCAATGATATTTGACCTATTTCCATCCCGTAATATGCAGTTATTAATGTATATTGGTTGGTGTACAACTATCAATTTTTGTTAATTACTGATTTAGTTTTCAA
Coding sequence (CDS)
ATGGCCGCTACGAGCATCGGAGCTCTGTGGAGTCTCAGAAGAGCAGCTCAAGCTTCGAGTTTCCGCATTCCCCTTGCCCTAAACCTCTCCTTCCACCAGGCCCGTTTTCCTCCTTCGCCGTCTTCTCCTCCGGGGTCGTCAGGAATATGTCAATTAGTGCAAGCTGTAAAAGGAGACATTGATGTTTTACTCAACGGAGTAGGAGATAAAGGTGTTATTGTAGATGTGAAGCATATTCTTGTGATGGCCAAACGTTCATTGTCAAGACGAGAAGTTCTCCATACGAACTTTCTCACCCCACCTGTGGTGAAAGAGTCAATGCTAGCTATACAAAAACTAGCTGACGTGAAAGCAATAGCTCAGGGAGGATACCCAGAGGCAGAGCGCTGCCGGATTTCTGTTGGGCATGCAGATGAACTAACAAGTGATCCAGACATAATTTCGGCATTGAGTATCACAGGAAATTTTACGTTTCACCCTTGCTCACACGGGGACTTCCTTGGATCAATTCTTGGTACAGGAATTGCTAGGGAAAAGCTTGGCGATATCATACTCCAGGGAGAAAATGGAGCTCAAGTAGTACTTGTTCCAGAACTCGTCGACTTCCTTATATCGTCACTGCGCAAGGTTGGTAATGTCACAGTTTCTTGTACGAGGATTCCGTTGACAGCTCTTGATTATGAACCACCAAAGACTAAGACATTTAACACCATTGAGGCATCTCTTAGGGTGGATGCTATAGCAAGTGCTGGGTTCAAGATTTCACGGTCCAAACTAGTGGATTTAATCAGCAGTGGTGATGTTCGTGTCAATTGGACACCGGTTACAAAAAATGGAACCACACTGAAGACTGGTGATGTTGTTTCTGTTAGTGGTAAAGGCAGACTAAAGATTGGAGAAATAAATTCTACGAAAAAAGGGAAATTTTCTGTTGAGCTTATCAGGTACGTGTAA
Protein sequence
MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGEINSTKKGKFSVELIRYV
Homology
BLAST of MC10g0927 vs. ExPASy Swiss-Prot
Match:
P71020 (Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) OX=224308 GN=ylmH PE=4 SV=1)
HSP 1 Score: 94.4 bits (233), Expect = 2.5e-18
Identity = 68/225 (30.22%), Postives = 112/225 (49.78%), Query Frame = 0
Query: 95 TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDI-ISALS 154
T+FL P +E ++ A+ ADV GGY AER R + + D + A +
Sbjct: 35 TDFLDP---REQVILSAVTGQADVGLAFSGGYDRAERKRAILFPEYITPEESDFELQAFN 94
Query: 155 ITGNFTFHPCSHGDFLGSILGTGIAREKLGDIILQGENGAQVVLVPELVDFLISSLRKVG 214
+ F H LG+++G G+ R+K GDI+ E Q+++ + DF+ + L + G
Sbjct: 95 VRYADKFVSVDHRSLLGALMGIGLKRQKFGDIVF-SETAVQLIVSADTADFVAAQLTQAG 154
Query: 215 NVTVSCTRIPLTALDYEPPKTKTFNTIEASLRVDAIASAGFKISRSKLVDLISSGDVRVN 274
VS +I L+ L+ + + +SLR+DA+ ++ + SR K L+ +G V+VN
Sbjct: 155 KAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQTLVKNGLVKVN 214
Query: 275 WTPVTKNGTTLKTGDVVSVSGKGRLKIGEI-NSTKKGKFSVELIR 316
W V + GD++S+ G GR + +I TKK K+ V R
Sbjct: 215 WKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWRVTFER 255
BLAST of MC10g0927 vs. NCBI nr
Match:
XP_022142743.1 (uncharacterized protein LOC111012786 isoform X1 [Momordica charantia])
HSP 1 Score: 608 bits (1568), Expect = 5.10e-219
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
Query: 1 MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDI 60
MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDI
Sbjct: 1 MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDI 60
Query: 61 DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA 120
DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA
Sbjct: 61 DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA 120
Query: 121 QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 180
QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL
Sbjct: 121 QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 180
Query: 181 GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA 240
GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA
Sbjct: 181 GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA 240
Query: 241 SLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE 300
SLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
Sbjct: 241 SLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE 300
Query: 301 INSTKKGKFSVELIRYV 317
INSTKKGKFSVELIRYV
Sbjct: 301 INSTKKGKFSVELIRYV 317
BLAST of MC10g0927 vs. NCBI nr
Match:
XP_022142745.1 (uncharacterized protein LOC111012786 isoform X2 [Momordica charantia])
HSP 1 Score: 602 bits (1552), Expect = 1.35e-216
Identity = 316/317 (99.68%), Postives = 316/317 (99.68%), Query Frame = 0
Query: 1 MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDI 60
MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDI
Sbjct: 1 MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDI 60
Query: 61 DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA 120
DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA
Sbjct: 61 DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA 120
Query: 121 QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 180
QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL
Sbjct: 121 QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 180
Query: 181 GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA 240
GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA
Sbjct: 181 GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA 240
Query: 241 SLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE 300
SLRVDAIASAGFKISRSKLVDLIS GDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
Sbjct: 241 SLRVDAIASAGFKISRSKLVDLIS-GDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE 300
Query: 301 INSTKKGKFSVELIRYV 317
INSTKKGKFSVELIRYV
Sbjct: 301 INSTKKGKFSVELIRYV 316
BLAST of MC10g0927 vs. NCBI nr
Match:
XP_038899605.1 (putative RNA-binding protein YlmH [Benincasa hispida])
HSP 1 Score: 561 bits (1445), Expect = 3.17e-200
Identity = 293/320 (91.56%), Postives = 305/320 (95.31%), Query Frame = 0
Query: 1 MAATSIGALWSLRRAAQASSFRIPLALNL---SFHQARFPPSPSSPPGSSGICQLVQAVK 60
MAATSIGA WSLRRAAQ+SSFR PLA+NL SFH+ARFP SPSSP GSSGICQLVQAVK
Sbjct: 1 MAATSIGARWSLRRAAQSSSFRSPLAVNLNKLSFHEARFPSSPSSPLGSSGICQLVQAVK 60
Query: 61 GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVK 120
GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRR VLHTNFLTPPVVKES+LA+QKLADVK
Sbjct: 61 GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRRVVLHTNFLTPPVVKESILALQKLADVK 120
Query: 121 AIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAR 180
AIAQGGYPEAERCRISVGHADEL SDPDI+SALSITGNF FHPCSHGDFLG+ILGTGIAR
Sbjct: 121 AIAQGGYPEAERCRISVGHADELLSDPDIVSALSITGNFMFHPCSHGDFLGAILGTGIAR 180
Query: 181 EKLGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNT 240
EKLGDIILQ E GAQVV+VPELVDFL SSLRKVGNVTVSCTRIPLTALDYEPPKTKTF T
Sbjct: 181 EKLGDIILQEEKGAQVVVVPELVDFLASSLRKVGNVTVSCTRIPLTALDYEPPKTKTFKT 240
Query: 241 IEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLK 300
IEASLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLK
Sbjct: 241 IEASLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLK 300
Query: 301 IGEINSTKKGKFSVELIRYV 317
IGEINSTKKGKF+VELIRYV
Sbjct: 301 IGEINSTKKGKFAVELIRYV 320
BLAST of MC10g0927 vs. NCBI nr
Match:
XP_004146247.1 (uncharacterized protein LOC101221944 [Cucumis sativus] >XP_031738291.1 uncharacterized protein LOC101221944 [Cucumis sativus] >KGN57626.1 hypothetical protein Csa_011390 [Cucumis sativus])
HSP 1 Score: 549 bits (1415), Expect = 1.14e-195
Identity = 292/318 (91.82%), Postives = 302/318 (94.97%), Query Frame = 0
Query: 3 ATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGD 62
ATSI ALWSLRRAAQ SSFR PLALNL+ F++ARFP SSP G+SGICQLVQAVKGD
Sbjct: 5 ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGD 64
Query: 63 IDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 122
IDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI
Sbjct: 65 IDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 124
Query: 123 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 182
AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK
Sbjct: 125 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 184
Query: 183 LGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIE 242
LGDI+LQ E GAQVV+VPELVDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIE
Sbjct: 185 LGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIE 244
Query: 243 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG 302
ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT +TKNGT LKTGD+VSVSGKGRLKIG
Sbjct: 245 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIG 304
Query: 303 EINSTKKGKFSVELIRYV 317
EINSTKKGKF+VELIRYV
Sbjct: 305 EINSTKKGKFAVELIRYV 319
BLAST of MC10g0927 vs. NCBI nr
Match:
KAG6600381.1 (hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031043.1 ylmH [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 549 bits (1415), Expect = 1.27e-195
Identity = 283/319 (88.71%), Postives = 300/319 (94.04%), Query Frame = 0
Query: 2 AATSIGALWSLRRAAQASSFRIPLALNL---SFHQARFPPSPSSPPGSSGICQLVQAVKG 61
A SIGALWSLRRAAQ+SSFR PLA+NL SFH+ARFP SPSSP G+SG+CQLVQAVKG
Sbjct: 4 ATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKG 63
Query: 62 DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 121
DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA
Sbjct: 64 DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 123
Query: 122 IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 181
IAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIARE
Sbjct: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIARE 183
Query: 182 KLGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTI 241
KLGDIILQ E GAQVV+VPELVDFL+SSLRKVGNVTVSCTRIPLT LDYEPPKTKTF TI
Sbjct: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243
Query: 242 EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKI 301
EASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT +TKNGT LKTGD+VSVSGKGRLKI
Sbjct: 244 EASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303
Query: 302 GEINSTKKGKFSVELIRYV 317
GEIN TKKGKF++ELI+YV
Sbjct: 304 GEINPTKKGKFAIELIKYV 322
BLAST of MC10g0927 vs. ExPASy TrEMBL
Match:
A0A6J1CP18 (uncharacterized protein LOC111012786 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012786 PE=4 SV=1)
HSP 1 Score: 608 bits (1568), Expect = 2.47e-219
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
Query: 1 MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDI 60
MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDI
Sbjct: 1 MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDI 60
Query: 61 DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA 120
DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA
Sbjct: 61 DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA 120
Query: 121 QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 180
QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL
Sbjct: 121 QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 180
Query: 181 GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA 240
GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA
Sbjct: 181 GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA 240
Query: 241 SLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE 300
SLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
Sbjct: 241 SLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE 300
Query: 301 INSTKKGKFSVELIRYV 317
INSTKKGKFSVELIRYV
Sbjct: 301 INSTKKGKFSVELIRYV 317
BLAST of MC10g0927 vs. ExPASy TrEMBL
Match:
A0A6J1CLT4 (uncharacterized protein LOC111012786 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111012786 PE=4 SV=1)
HSP 1 Score: 602 bits (1552), Expect = 6.54e-217
Identity = 316/317 (99.68%), Postives = 316/317 (99.68%), Query Frame = 0
Query: 1 MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDI 60
MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDI
Sbjct: 1 MAATSIGALWSLRRAAQASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVKGDI 60
Query: 61 DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA 120
DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA
Sbjct: 61 DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA 120
Query: 121 QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 180
QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL
Sbjct: 121 QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 180
Query: 181 GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA 240
GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA
Sbjct: 181 GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA 240
Query: 241 SLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE 300
SLRVDAIASAGFKISRSKLVDLIS GDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE
Sbjct: 241 SLRVDAIASAGFKISRSKLVDLIS-GDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE 300
Query: 301 INSTKKGKFSVELIRYV 317
INSTKKGKFSVELIRYV
Sbjct: 301 INSTKKGKFSVELIRYV 316
BLAST of MC10g0927 vs. ExPASy TrEMBL
Match:
A0A0A0LC56 (S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G233470 PE=4 SV=1)
HSP 1 Score: 549 bits (1415), Expect = 5.50e-196
Identity = 292/318 (91.82%), Postives = 302/318 (94.97%), Query Frame = 0
Query: 3 ATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGD 62
ATSI ALWSLRRAAQ SSFR PLALNL+ F++ARFP SSP G+SGICQLVQAVKGD
Sbjct: 5 ATSIAALWSLRRAAQFSSFRRPLALNLNRLCFNEARFP---SSPLGTSGICQLVQAVKGD 64
Query: 63 IDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 122
IDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI
Sbjct: 65 IDVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAI 124
Query: 123 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 182
AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK
Sbjct: 125 AQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREK 184
Query: 183 LGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIE 242
LGDI+LQ E GAQVV+VPELVDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIE
Sbjct: 185 LGDIMLQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIE 244
Query: 243 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIG 302
ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWT +TKNGT LKTGD+VSVSGKGRLKIG
Sbjct: 245 ASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTSITKNGTILKTGDIVSVSGKGRLKIG 304
Query: 303 EINSTKKGKFSVELIRYV 317
EINSTKKGKF+VELIRYV
Sbjct: 305 EINSTKKGKFAVELIRYV 319
BLAST of MC10g0927 vs. ExPASy TrEMBL
Match:
A0A6J1J103 (uncharacterized protein LOC111480897 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480897 PE=4 SV=1)
HSP 1 Score: 547 bits (1409), Expect = 5.04e-195
Identity = 284/319 (89.03%), Postives = 299/319 (93.73%), Query Frame = 0
Query: 2 AATSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKG 61
A SIGALWSLRRAAQ+SS R PLA+NLS FH+ARFP SPSSP GSSG+CQLVQAVKG
Sbjct: 4 ATASIGALWSLRRAAQSSSLRTPLAVNLSKVSFHEARFPTSPSSPLGSSGMCQLVQAVKG 63
Query: 62 DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKA 121
DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAI+KLADVKA
Sbjct: 64 DIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIKKLADVKA 123
Query: 122 IAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIARE 181
IAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIARE
Sbjct: 124 IAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFMFHTCTHGDFLGAILGTGIARE 183
Query: 182 KLGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTI 241
KLGDIILQ E GAQVV+VPELVDFL+SSL KVGNVTVSCTRIPLT LDYEPPKTKTF TI
Sbjct: 184 KLGDIILQEEKGAQVVIVPELVDFLVSSLHKVGNVTVSCTRIPLTDLDYEPPKTKTFKTI 243
Query: 242 EASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKI 301
EASLRVDA+ASAGFKISRSKLVD ISSGDVRVNWT +TKNGT LKTGD+VSVSGKGRLKI
Sbjct: 244 EASLRVDALASAGFKISRSKLVDFISSGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI 303
Query: 302 GEINSTKKGKFSVELIRYV 317
GEIN TKKGKF+VELIRYV
Sbjct: 304 GEINPTKKGKFAVELIRYV 322
BLAST of MC10g0927 vs. ExPASy TrEMBL
Match:
A0A1S3C3I2 (putative RNA-binding protein YlmH isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496076 PE=4 SV=1)
HSP 1 Score: 545 bits (1403), Expect = 3.70e-194
Identity = 286/317 (90.22%), Postives = 300/317 (94.64%), Query Frame = 0
Query: 4 TSIGALWSLRRAAQASSFRIPLALNLS---FHQARFPPSPSSPPGSSGICQLVQAVKGDI 63
T+IGALWSLR A+Q SSFR PL +NL+ FH+ RFP SSP G+SGICQLVQAVKGDI
Sbjct: 6 TTIGALWSLRIASQFSSFRRPLPVNLNRLYFHETRFP---SSPLGTSGICQLVQAVKGDI 65
Query: 64 DVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA 123
DVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA
Sbjct: 66 DVLLNGVGDKGVIVDVKQILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVKAIA 125
Query: 124 QGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 183
QGGYPEAERCRISVGH+DELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL
Sbjct: 126 QGGYPEAERCRISVGHSDELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAREKL 185
Query: 184 GDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNTIEA 243
GDII+Q E GAQVV+VPELVDFLISSLRKVGNVTVSCTRIPLTAL+YEPPKTKTF TIEA
Sbjct: 186 GDIIIQEETGAQVVIVPELVDFLISSLRKVGNVTVSCTRIPLTALEYEPPKTKTFKTIEA 245
Query: 244 SLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLKIGE 303
SLRVDA+ASAGFKISRSKLVDLISSGDVRVNWTP+TKNGT LKTGD+VSVSGKGRLKIGE
Sbjct: 246 SLRVDALASAGFKISRSKLVDLISSGDVRVNWTPITKNGTILKTGDIVSVSGKGRLKIGE 305
Query: 304 INSTKKGKFSVELIRYV 317
INSTKKGKF+VELIRYV
Sbjct: 306 INSTKKGKFAVELIRYV 319
BLAST of MC10g0927 vs. TAIR 10
Match:
AT1G53120.1 (RNA-binding S4 domain-containing protein )
HSP 1 Score: 405.6 bits (1041), Expect = 3.7e-113
Identity = 208/320 (65.00%), Postives = 253/320 (79.06%), Query Frame = 0
Query: 1 MAATSIGALWSLRRAA---QASSFRIPLALNLSFHQARFPPSPSSPPGSSGICQLVQAVK 60
MA TS+ W + R A A+S + P S + C +A+K
Sbjct: 1 MAVTSLAPPWVILRLAFRSVAASSCLHTNQKTLITNLSIPTSFPLRQSALRRCYSAEAIK 60
Query: 61 GDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKESMLAIQKLADVK 120
GD+D LL GVGD+ V +VK IL MA+R+ S+REVLHT+FLTPP+VKES+ ++K ADVK
Sbjct: 61 GDVDFLLKGVGDQAVAKEVKQILEMARRASSKREVLHTDFLTPPIVKESVSLLEKFADVK 120
Query: 121 AIAQGGYPEAERCRISVGHADELTSDPDIISALSITGNFTFHPCSHGDFLGSILGTGIAR 180
+AQGGYPEAERCRIS+GH D LTSDPDI++ALSITGNF F PCSHGDFLG+ILGTGI+R
Sbjct: 121 IVAQGGYPEAERCRISIGHPDVLTSDPDIVAALSITGNFGFQPCSHGDFLGAILGTGISR 180
Query: 181 EKLGDIILQGENGAQVVLVPELVDFLISSLRKVGNVTVSCTRIPLTALDYEPPKTKTFNT 240
EKLGDI++Q E GAQV++VPELVDF++++L KVGNV V+C++IPL AL+YEPP+T +F T
Sbjct: 181 EKLGDILIQEEKGAQVLIVPELVDFVVTALDKVGNVGVTCSKIPLLALEYEPPRTNSFKT 240
Query: 241 IEASLRVDAIASAGFKISRSKLVDLISSGDVRVNWTPVTKNGTTLKTGDVVSVSGKGRLK 300
+EASLR+DA+ASAGFKISRSKLVDLISS DVRVNW VTKNGT +KTGDVVSVSGKGRLK
Sbjct: 241 VEASLRIDAVASAGFKISRSKLVDLISSKDVRVNWATVTKNGTIVKTGDVVSVSGKGRLK 300
Query: 301 IGEINSTKKGKFSVELIRYV 318
IGEIN TKKGKF+VE+IRY+
Sbjct: 301 IGEINETKKGKFAVEIIRYL 320
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P71020 | 2.5e-18 | 30.22 | Putative RNA-binding protein YlmH OS=Bacillus subtilis (strain 168) OX=224308 GN... | [more] |
Match Name | E-value | Identity | Description | |
XP_022142743.1 | 5.10e-219 | 100.00 | uncharacterized protein LOC111012786 isoform X1 [Momordica charantia] | [more] |
XP_022142745.1 | 1.35e-216 | 99.68 | uncharacterized protein LOC111012786 isoform X2 [Momordica charantia] | [more] |
XP_038899605.1 | 3.17e-200 | 91.56 | putative RNA-binding protein YlmH [Benincasa hispida] | [more] |
XP_004146247.1 | 1.14e-195 | 91.82 | uncharacterized protein LOC101221944 [Cucumis sativus] >XP_031738291.1 uncharact... | [more] |
KAG6600381.1 | 1.27e-195 | 88.71 | hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1CP18 | 2.47e-219 | 100.00 | uncharacterized protein LOC111012786 isoform X1 OS=Momordica charantia OX=3673 G... | [more] |
A0A6J1CLT4 | 6.54e-217 | 99.68 | uncharacterized protein LOC111012786 isoform X2 OS=Momordica charantia OX=3673 G... | [more] |
A0A0A0LC56 | 5.50e-196 | 91.82 | S4 RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G233... | [more] |
A0A6J1J103 | 5.04e-195 | 89.03 | uncharacterized protein LOC111480897 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
A0A1S3C3I2 | 3.70e-194 | 90.22 | putative RNA-binding protein YlmH isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349... | [more] |
Match Name | E-value | Identity | Description | |
AT1G53120.1 | 3.7e-113 | 65.00 | RNA-binding S4 domain-containing protein | [more] |