MC10g0730 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g0730
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	arabinogalactan peptide 22-like
Location	MC10: 6096615 .. 6097449 (-)
RNA-Seq Expression	MC10g0730
Synteny	MC10g0730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCTAGGGCTTCTTTTGGATTTGTGGCTGCCGCCGCCCTCATCTTCGCCATCTTCTTGCCGGTCGCCCACCCTCACTCCTTGCCTCCCGCACCCGCTCCCTCCAGCGACGGTTAGTTCTCTTCTTCCATTCGATTTCCTCCTGTTCTGTTTTACATTTCCGTTCCAGATCTGTGAAATCGGTTTGATCTCTCTGCCTCCGAATGCTCCACTTTTGCTGGATTTGGAAGAATGTTTGGCGTTCTGTTGAGTTTCAGTTTCTTCGTTTGCTAAAATTGTGAAAGAATAATTCCGATTTACGTTTCTCGATTAACCTACCGAGCTTAAATCTTGATTTATTTCAAAAGAAGTTTCGTGTGTTTGTTCAAGCTTTCGGTGGATCTACTTTCGTAGAACTTGGAAGTACTCCAGAAATTATAGAAGCTATTTTTCTTGTAATAATTAAAATGGCAAACCAATTTGAGCTTTGTTTTAAAAAGGAAAAAAATGGCATTATTATATAATTGTATTTACTATTTGTGTAGCCTGCCACTACTTTATAATAAAGAAATGCGCGTTCTTCTAAAATTTATCAAGAAATTTAGCCACATGGCCAAAAGTTCCTTTGATCATCAGCAATTCTTTTTGTTTATACATATATATGCTTTATAAACTAAACAGTCTCCCTTAAATATAAATTTGAGAAAATTAAGCTAAGAATTGAGATGTTGAAAATGGGATTTGACAAATGGCAGGGACATCCATAGATCAAGGAATAGCATATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAATGCAGACTTATCCAACAGCTTC

mRNA sequence

ATGGCGGTTTCTAGGGCTTCTTTTGGATTTGTGGCTGCCGCCGCCCTCATCTTCGCCATCTTCTTGCCGGTCGCCCACCCTCACTCCTTGCCTCCCGCACCCGCTCCCTCCAGCGACGGGACATCCATAGATCAAGGAATAGCATATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAATGCAGACTTATCCAACAGCTTC

Coding sequence (CDS)

ATGGCGGTTTCTAGGGCTTCTTTTGGATTTGTGGCTGCCGCCGCCCTCATCTTCGCCATCTTCTTGCCGGTCGCCCACCCTCACTCCTTGCCTCCCGCACCCGCTCCCTCCAGCGACGGGACATCCATAGATCAAGGAATAGCATATGTGTTGATGTTGGTGGCATTGGCACTCACATATCTCATCCACAATGCAGACTTATCCAACAGCTTC

Protein sequence

MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIHNADLSNSF

Homology

[Close]

BLAST of MC10g0730 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.5e-15
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          M+ SR  FG     ++IFAI LP+AH  S  PAPAP+SDGT+IDQGIAYVLMLVAL LTY
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTY 60

Query: 61 LIH 64
          LIH
Sbjct: 61 LIH 63

[Close]

BLAST of MC10g0730 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.2e-14
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 4  SRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S   +A  A +FA+  P A   SL PAP+P+SDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNS 71
            D S+S
Sbjct: 63 PLDASSS 69

[Close]

BLAST of MC10g0730 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-13
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 4  SRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S    A  + +FA+ L +A   SL PAPAP+SDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNSF 72
            D S+S+
Sbjct: 63 PLDASSSY 70

[Close]

BLAST of MC10g0730 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-12
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          MA  +     +A   +I  I LP+A  HS  PAPAP+SDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIH 64
           IH
Sbjct: 61 FIH 63

[Close]

BLAST of MC10g0730 vs. NCBI nr
Match: XP_022136454.1 (arabinogalactan peptide 22-like [Momordica charantia])

HSP 1 Score: 134 bits (336), Expect = 3.18e-39
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of MC10g0730 vs. NCBI nr
Match: XP_022931316.1 (arabinogalactan peptide 22-like [Cucurbita moschata])

HSP 1 Score: 122 bits (305), Expect = 1.71e-34
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of MC10g0730 vs. NCBI nr
Match: KAG6577157.1 (Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015155.1 Arabinogalactan peptide 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121 bits (304), Expect = 2.43e-34
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRMSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of MC10g0730 vs. NCBI nr
Match: XP_038882280.1 (arabinogalactan protein 22-like [Benincasa hispida])

HSP 1 Score: 121 bits (303), Expect = 3.46e-34
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          MAVS ASFGF+AAAALIFAIFLPVA PHSL PAPAP+SDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSTASFGFLAAAALIFAIFLPVAQPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLSN+F
Sbjct: 61 LIHNADLSNTF 71

[Close]

BLAST of MC10g0730 vs. NCBI nr
Match: XP_022985432.1 (arabinogalactan peptide 20 [Cucurbita maxima])

HSP 1 Score: 120 bits (300), Expect = 9.92e-34
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLS+SF
Sbjct: 61 LIHNADLSSSF 71

[Close]

BLAST of MC10g0730 vs. ExPASy TrEMBL
Match: A0A6J1C4C2 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111008162 PE=4 SV=1)

HSP 1 Score: 134 bits (336), Expect = 1.54e-39
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of MC10g0730 vs. ExPASy TrEMBL
Match: A0A6J1ETC6 (arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111437536 PE=4 SV=1)

HSP 1 Score: 122 bits (305), Expect = 8.29e-35
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLSNSF
Sbjct: 61 LIHNADLSNSF 71

[Close]

BLAST of MC10g0730 vs. ExPASy TrEMBL
Match: A0A6J1J4V7 (arabinogalactan peptide 20 OS=Cucurbita maxima OX=3661 GN=LOC111483439 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 4.80e-34
Identity = 65/71 (91.55%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR SFGFVAAAALIFAIFLPVA P SL PAPAP+SDGTSIDQGIAYVLMLVALALTY
Sbjct: 1  MAVSRTSFGFVAAAALIFAIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYVLMLVALALTY 60

Query: 61 LIHNADLSNSF 71
          LIHNADLS+SF
Sbjct: 61 LIHNADLSSSF 71

[Close]

BLAST of MC10g0730 vs. ExPASy TrEMBL
Match: A0A0A0KZS8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051380 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 4.15e-32
Identity = 60/67 (89.55%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR+SFG +AA ALIFAIFLPVAHPHSL PAPAP+SDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRSSFGLLAATALIFAIFLPVAHPHSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADL 67
          LIHNADL
Sbjct: 61 LIHNADL 67

[Close]

BLAST of MC10g0730 vs. ExPASy TrEMBL
Match: A0A5D3CYF3 (Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004150 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 5.41e-31
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          MAVSR+SF  +AA ALIFAIFLPVAHP SL PAPAP+SDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MAVSRSSFELLAATALIFAIFLPVAHPLSLAPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIHNADLSNS 70
          LIHNADLSN+
Sbjct: 61 LIHNADLSNN 70

[Close]

BLAST of MC10g0730 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 80.9 bits (198), Expect = 4.6e-16
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          M+ SR  FG     ++IFAI LP+AH  S  PAPAP+SDGT+IDQGIAYVLMLVAL LTY
Sbjct: 1  MSGSRLFFGVSTIVSIIFAILLPMAHAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTY 60

Query: 61 LIH 64
          LIH
Sbjct: 61 LIH 63

[Close]

BLAST of MC10g0730 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 77.4 bits (189), Expect = 5.1e-15
Identity = 41/67 (61.19%), Postives = 49/67 (73.13%), Query Frame = 0


Query: 4  SRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S   +A  A +FA+  P A   SL PAP+P+SDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVAVIALFAFVFAVISPFAGAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNS 71
            D S+S
Sbjct: 63 PLDASSS 69

[Close]

BLAST of MC10g0730 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-14
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 4  SRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTYLIH 63
          SR S    A  + +FA+ L +A   SL PAPAP+SDGTSIDQGIAY+LM+VAL LTYLIH
Sbjct: 3  SRNSVTGFALFSFVFAVILSLAGAQSLAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

Query: 64 NADLSNSF 72
            D S+S+
Sbjct: 63 PLDASSSY 70

[Close]

BLAST of MC10g0730 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 72.0 bits (175), Expect = 2.2e-13
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 1  MAVSRASFGFVAAAALIFAIFLPVAHPHSLPPAPAPSSDGTSIDQGIAYVLMLVALALTY 60
          MA  +     +A   +I  I LP+A  HS  PAPAP+SDGTSIDQGIAYVLM+VALALTY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 LIH 64
           IH
Sbjct: 61 FIH 63

The following BLAST results are available for this feature:

BLAST of MC10g0730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9T8	6.5e-15	68.25	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9M373	7.2e-14	61.19	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]
O82337	2.7e-13	60.29	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9FK16	3.0e-12	61.90	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]

BLAST of MC10g0730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136454.1	3.18e-39	100.00	arabinogalactan peptide 22-like [Momordica charantia]	[more]
XP_022931316.1	1.71e-34	92.96	arabinogalactan peptide 22-like [Cucurbita moschata]	[more]
KAG6577157.1	2.43e-34	92.96	Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_038882280.1	3.46e-34	90.14	arabinogalactan protein 22-like [Benincasa hispida]	[more]
XP_022985432.1	9.92e-34	91.55	arabinogalactan peptide 20 [Cucurbita maxima]	[more]

BLAST of MC10g0730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4C2	1.54e-39	100.00	arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111008162 P...	[more]
A0A6J1ETC6	8.29e-35	92.96	arabinogalactan peptide 22-like OS=Cucurbita moschata OX=3662 GN=LOC111437536 PE...	[more]
A0A6J1J4V7	4.80e-34	91.55	arabinogalactan peptide 20 OS=Cucurbita maxima OX=3661 GN=LOC111483439 PE=4 SV=1	[more]
A0A0A0KZS8	4.15e-32	89.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G051380 PE=4 SV=1	[more]
A0A5D3CYF3	5.41e-31	85.71	Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MC10g0730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24105.1	4.6e-16	68.25	arabinogalactan protein 41	[more]
AT3G61640.1	5.1e-15	61.19	arabinogalactan protein 20	[more]
AT2G46330.1	1.9e-14	60.29	arabinogalactan protein 16	[more]
AT5G53250.1	2.2e-13	61.90	arabinogalactan protein 22	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 32..63 e-value: 7.2E-18 score: 64.2
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 1..70
None	No IPR available	PANTHER	PTHR33374:SF34	ARABINOGALACTAN PROTEIN 22	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g0730.1	MC10g0730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane