MC10g0717 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g0717
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC10: 5986625 .. 5986768 (+)
RNA-Seq ExpressionMC10g0717
SyntenyMC10g0717
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAGCGCTTCGCGATCATCTCCACCACCAAAGAATAGAACCGTGATGAAAAACGAAACATTGCTCGATGAAACATGGGTTGTTCCACCCAAACCACGATCAACCAATATTCCAACCGAACATGGAGCATGCTCGAGAACATTC

mRNA sequence

GAAAGCGCTTCGCGATCATCTCCACCACCAAAGAATAGAACCGTGATGAAAAACGAAACATTGCTCGATGAAACATGGGTTGTTCCACCCAAACCACGATCAACCAATATTCCAACCGAACATGGAGCATGCTCGAGAACATTC

Coding sequence (CDS)

GAAAGCGCTTCGCGATCATCTCCACCACCAAAGAATAGAACCGTGATGAAAAACGAAACATTGCTCGATGAAACATGGGTTGTTCCACCCAAACCACGATCAACCAATATTCCAACCGAACATGGAGCATGCTCGAGAACATTC

Protein sequence

ESASRSSPPPKNRTVMKNETLLDETWVVPPKPRSTNIPTEHGACSRTF
Homology
BLAST of MC10g0717 vs. NCBI nr
Match: KAG2241432.1 (hypothetical protein Bca52824_096584 [Brassica carinata])

HSP 1 Score: 49.7 bits (117), Expect = 1.88e-05
Identity = 24/38 (63.16%), Postives = 26/38 (68.42%), Query Frame = 0

Query: 11  KNRTVMKNETLLDETWVVPPKPRSTNIPTEHGACSRTF 48
           KN+TV+ N   LD T V PP PRST I TEHGA S TF
Sbjct: 113 KNKTVITNVKSLDATRVAPPSPRSTRIATEHGASSITF 150

BLAST of MC10g0717 vs. ExPASy TrEMBL
Match: A0A5K0X5P1 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS4361 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 7.81e-11
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 0

Query: 3  ASRSSPPPKNRTVMKNETLLDETWVVPPKPRSTNIPTEHGACSRTF 48
          AS SS PPK +T ++  T L  TWVVPP+P ST +PTEHGA SRTF
Sbjct: 3  ASLSSGPPKKKTAIEWATSLAVTWVVPPRPLSTRMPTEHGAFSRTF 48

BLAST of MC10g0717 vs. ExPASy TrEMBL
Match: A0A7C9DM47 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.51e-06
Identity = 25/41 (60.98%), Postives = 27/41 (65.85%), Query Frame = 0

Query: 3   ASRSSPPPKNRTVMKNETLLDETWVVPPKPRSTNIPTEHGA 43
           ASRSS PPK +T +  ETLL  TW  PP PRST   TE GA
Sbjct: 95  ASRSSGPPKKKTWITEETLLAATWDEPPSPRSTRRATEQGA 135

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG2241432.11.88e-0563.16hypothetical protein Bca52824_096584 [Brassica carinata][more]
Match NameE-valueIdentityDescription
A0A5K0X5P17.81e-1163.04Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS43... [more]
A0A7C9DM475.51e-0660.98Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..48

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g0717.1MC10g0717.1mRNA