MC10g0558 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g0558
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Tetratricopeptide-like helical
Location	MC10: 4640539 .. 4640892 (+)
RNA-Seq Expression	MC10g0558
Synteny	MC10g0558

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATGGATTCCAATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCATTTATTGGCAGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCTTTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTTAGAGCTATTTTAGGGTTTCTGATGGTGATGACAATCAAGATAATAACTGCGAACAGATCCAAG

mRNA sequence

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATGGATTCCAATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCATTTATTGGCAGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCTTTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTTAGAGCTATTTTAGGGTTTCTGATGGTGATGACAATCAAGATAATAACTGCGAACAGATCCAAG

Coding sequence (CDS)

ATGTCGGTTTCTTTAGAAGCTTTGGCAATGGCGGGGATGGATTCCAATGAGTGGGCTGTGGATGCTGAGGAATGGGAAAGATATGAAATGGAGAACCATGTTCCGCCTCATTTATTGGCAGACGAGGACGAGGAGGAAGTAAACGTGACAAGTACGACGACCGACGTCGGATTCTTTGGGAAAAATGGCAGAGGTGACGGAGGCCATTGCTTTTGGGGCATTCTCTGTAATATGAGCAGAAGCATAGAGAAGAAGGCTTATGATGGGCTGAACTCAGAGAGAATAATGGTTAGAGCTATTTTAGGGTTTCTGATGGTGATGACAATCAAGATAATAACTGCGAACAGATCCAAG

Protein sequence

MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEEEVNVTSTTTDVGFFGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKIITANRSK

Homology

[Close]

BLAST of MC10g0558 vs. NCBI nr
Match: KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150 bits (378), Expect = 5.18e-44
Identity = 79/126 (62.70%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEEEVNVTSTTTD----- 60
           MSVSLEALAMAG+ SNEWA+DAEEWER E+EN VPPHLLADED+++ NVTST ++     
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPV 60

Query: 61  VGFFGKNGRGDGG----HCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKI 117
            GFF    R DGG    HCFWGILC++S+S+EK+A +G++S RI+VR ILGFL+V  +KI
Sbjct: 61  AGFFDSLHREDGGADDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKILKI 120

[Close]

BLAST of MC10g0558 vs. NCBI nr
Match: KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150 bits (378), Expect = 5.18e-44
Identity = 79/126 (62.70%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEEEVNVTSTTTD----- 60
           MSVSLEALAMAG+ SNEWA+DAEEWER E+EN VPPHLLADED+++ NVTST ++     
Sbjct: 1   MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDNVTSTVSNYSFPV 60

Query: 61  VGFFGKNGRGDGG----HCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKI 117
            GFF    R DGG    HCFWGILC++S+S+EK+A +G++S RI+VR ILGFL+V  +KI
Sbjct: 61  AGFFDSLRREDGGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLLVKILKI 120

[Close]

BLAST of MC10g0558 vs. NCBI nr
Match: TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 4.98e-32
Identity = 73/129 (56.59%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEEEVN--VTSTTTDV-- 60
           MSVSLEALAMAG+DSNEW +DA+EWER E++  VPPHLLADE+++E    VTST ++   
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60

Query: 61  ---GFFG----KNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTI 118
              G FG    ++ + DG     GI  ++S+ IEK+A +G+NS RI+VR ILGFLMVMT+
Sbjct: 61  RVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 120

[Close]

BLAST of MC10g0558 vs. NCBI nr
Match: KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (278), Expect = 6.26e-29
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEEEVN--VTSTTTDV-- 60
           MSVSLEALAMAG+DSNEW +DA+EWER E++  VPPHLLADE+++E    VTST ++   
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60

Query: 61  ---GFFG----KNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMT 108
              G FG    ++ + DG H   GI  ++S+ IEK+A +G+NS RI+VR ILGFLMVMT
Sbjct: 61  RVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118

[Close]

BLAST of MC10g0558 vs. NCBI nr
Match: XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])

HSP 1 Score: 108 bits (271), Expect = 7.02e-28
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEEEVNVTST--TTDVGF 60
           MSVSLEALAMAG+DSNEWA+DAEEWER EME  +PPHLLADED+EE  +++    T    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPATRCSC 60

Query: 61  FGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKIITANRSK 118
             K+    G  C   I+ ++ +  EK+  + L+S  I+  A++GFLM MTIKII + RSK
Sbjct: 61  CRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRSK 120

[Close]

BLAST of MC10g0558 vs. ExPASy TrEMBL
Match: A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 5.02e-35
Identity = 77/133 (57.89%), Postives = 97/133 (72.93%), Query Frame = 0


Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEEE---VNVTSTT---- 60
           MSVSLEALAMAG+DSNEWA+DAEEWER E++  VPPHLLADE+++E    +VT++T    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60

Query: 61  ---TDVGFFGKNGR-----GDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLM 118
               D  F G  GR     G  GH   GI C++S+ IEK+A +G++S RI+VR ILGFLM
Sbjct: 61  CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120

[Close]

BLAST of MC10g0558 vs. ExPASy TrEMBL
Match: A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)

HSP 1 Score: 119 bits (299), Expect = 2.41e-32
Identity = 73/129 (56.59%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEEEVN--VTSTTTDV-- 60
           MSVSLEALAMAG+DSNEW +DA+EWER E++  VPPHLLADE+++E    VTST ++   
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60

Query: 61  ---GFFG----KNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTI 118
              G FG    ++ + DG     GI  ++S+ IEK+A +G+NS RI+VR ILGFLMVMT+
Sbjct: 61  RVDGSFGGWRRRDWKADGALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMTM 120

[Close]

BLAST of MC10g0558 vs. ExPASy TrEMBL
Match: A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 3.03e-29
Identity = 67/119 (56.30%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEEEVN--VTSTTTDV-- 60
           MSVSLEALAMAG+DSNEW +DA+EWER E++  VPPHLLADE+++E    VTST ++   
Sbjct: 1   MSVSLEALAMAGIDSNEWGMDAQEWERNEIDV-VPPHLLADEEDDEDGEYVTSTISNYCF 60

Query: 61  ---GFFG----KNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMT 108
              G FG    ++ + DG H   GI  ++S+ IEK+A +G+NS RI+VR ILGFLMVMT
Sbjct: 61  RVDGSFGGWRRRDWKADGAHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMVMT 118

[Close]

BLAST of MC10g0558 vs. ExPASy TrEMBL
Match: A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)

HSP 1 Score: 108 bits (271), Expect = 3.40e-28
Identity = 63/120 (52.50%), Postives = 82/120 (68.33%), Query Frame = 0


Query: 1   MSVSLEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEEEVNVTST--TTDVGF 60
           MSVSLEALAMAG+DSNEWA+DAEEWER EME  +PPHLLADED+EE  +++    T    
Sbjct: 1   MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEEDEMSTKFPATRCSC 60

Query: 61  FGKNGRGDGGHCFWGILCNMSRSIEKKAYDGLNSERIMVRAILGFLMVMTIKIITANRSK 118
             K+    G  C   I+ ++ +  EK+  + L+S  I+  A++GFLM MTIKII + RSK
Sbjct: 61  CRKDDGVGGVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSAVVGFLMFMTIKIIASKRSK 120

[Close]

BLAST of MC10g0558 vs. ExPASy TrEMBL
Match: A0A0A0KU90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.56e-13
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  MSVSLEALAMAGMDSNEWAVDAEEWER--YEMENH--VPPHLLADEDEEEV 47
          M VSLEALAMAG+DSNEWA+DAEEW+   ++MEN   +PPHLLADEDEE +
Sbjct: 1  MRVSLEALAMAGIDSNEWAMDAEEWKTNTHQMENDDIIPPHLLADEDEENI 51

[Close]

BLAST of MC10g0558 vs. TAIR 10
Match: AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.6e-05
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 0


Query: 5  LEALAMAGMDSNEWAVDAEEWERYEMENHVPPHLLADEDEEE 47
          +EALAMAG+D  EW +  EEWE    E+ VP HLLAD+ +EE
Sbjct: 1  MEALAMAGVDYQEWGLSIEEWEL--QESVVPLHLLADDFKEE 40

The following BLAST results are available for this feature:

BLAST of MC10g0558 vs.


Match Name	E-value	Identity	Description

BLAST of MC10g0558 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015383.1	5.18e-44	62.70	hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577295.1	5.18e-44	62.70	hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK16880.1	4.98e-32	56.59	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
KAA0044707.1	6.26e-29	56.30	Tetratricopeptide-like helical [Cucumis melo var. makuwa]	[more]
XP_022943015.1	7.02e-28	52.50	uncharacterized protein LOC111447880 [Cucurbita moschata]	[more]

BLAST of MC10g0558 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWE7	5.02e-35	57.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1	[more]
A0A5D3CZU0	2.41e-32	56.59	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TS68	3.03e-29	56.30	Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1FX98	3.40e-28	52.50	uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478...	[more]
A0A0A0KU90	5.56e-13	70.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026820 PE=4 SV=1	[more]

BLAST of MC10g0558 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22320.1	3.6e-05	57.14	unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g0558.1	MC10g0558.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane