MC10g0519 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g0519
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	cytochrome c oxidase subunit 6a, mitochondrial
Location	MC10: 4292488 .. 4293869 (-)
RNA-Seq Expression	MC10g0519
Synteny	MC10g0519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGCGACAATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCTCAAAACTCTGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGATGATGTTCGTAAGTCTCTCAATCTCTCTCGCTAAGAGAATATTGTTTGTAATCGAAATCTCTCTGGTATTTTTGATCGTGGTTGTGTCTGCGCTGCAATTGGTTCACGTCTCTCTCGATTTGCTTTTCTTTATATGGTCAGAATTATTTCTTGTTACTTTTGACAATTTCGTTTAGCCCCTGTATGTTAGATTTCTTTAATTTTTCTGCCCTATTTTCATCTGACGAAATGAGGGGAAAAGGATGATATTAATGATCGAGTCATATACACAAAGTCAGACCTAAATAATTTGATCGTACGTTTTTATGTTCCTTTTAAATTGGGAAGCTTGCAAAGGGAGCATTTGATACTTGTCTGTAACACATTTGATGAGGTTCTCAGTCGCTGAGGAGTAGATTTGATTTAAAAAGAAGGTGAGGAGGAAGACGAGAGGGAAGAAAATTTCTTGGTCGATTACTGAGTGGCACTAATATACTTCTTGATTTCTATAATTAGATAAGAATGCTCAATAAAGTTTTAGGTACATCTACTCCGCTCTCAGATATTAAGACATAAAGGAAAACTGGAAAAGAAACATAAATGTAGTAAGTTTATAAGTGGGGTTAGTTCTTCTATAAACAAATTCTCCTTTGAGATAAAGGGTGTGAAAAATTTTGGAACAAAGCCAAGGGCTTTTTTCAATGACTAACGAAGAGGATGTGGGGGTGATGGACAAATGAATCAATTCAGTGTCATGATTCTTCTGCTCAAATTCGTGTTGAAGTGAATTTATTTTCCTTTGATTTGCCAAAAAATATACTTGCTGGTTCTTTACTTTGACTAGGTACAATTATGTATTGTTATTTCAAGTACTATTTCTGACTTATAGTGGACAAGTAGCAAGTTCGATAAGAAATTGTATGCAGGAGTGCAATAAAGCTCCTTTTTTATGATATATCTTCTTCCTTTATGTTCATACTGCATATGTTTTATTTCTTATACGGACTTTCTTTCTTGATGTGATGTCAGGTGAGACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTATAGCTTGCACAACTTTAGCATTCTATAATTTATCAAAGGGCCACCCCCACCATGAAGAGCCTCCTGTGAGCTATAGCTTCAGTCAATTTATTTTTCCCTCCACATCTCAATATCTTAGTTTCACTATGCATTGTACTCTCATATGTGTCCCATTTATATTTGTTTTGTTTTCATTTTATGCAGGCATATCCCTATTTACACATACGCAATAAAGAGTTCCCATGGGGT

mRNA sequence

ATGGCGATGGCGACAATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCTCAAAACTCTGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGATGATGTTCGTGAGACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTATAGCTTGCACAACTTTAGCATTCTATAATTTATCAAAGGGCCACCCCCACCATGAAGAGCCTCCTGCATATCCCTATTTACACATACGCAATAAAGAGTTCCCATGGGGT

Coding sequence (CDS)

ATGGCGATGGCGACAATCCGATCCAATCTTCTTCGCGCCGCCTTCCGCGGTGCCTCTCAAAACTCTGCTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGATGATGTTCGTGAGACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTATAGCTTGCACAACTTTAGCATTCTATAATTTATCAAAGGGCCACCCCCACCATGAAGAGCCTCCTGCATATCCCTATTTACACATACGCAATAAAGAGTTCCCATGGGGT

Protein sequence

MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFYNLSKGHPHHEEPPAYPYLHIRNKEFPWG

Homology

[Close]

BLAST of MC10g0519 vs. ExPASy Swiss-Prot
Match: Q9T070 (Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=COX6A PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-26
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSA-HDDVRETAKWEKITYAGIIACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDD  E AKWEKITY GI +CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PPAYP++HIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

[Close]

BLAST of MC10g0519 vs. NCBI nr
Match: XP_022136571.1 (cytochrome c oxidase subunit 6a, mitochondrial [Momordica charantia])

HSP 1 Score: 183 bits (464), Expect = 4.23e-58
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of MC10g0519 vs. NCBI nr
Match: XP_022941809.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG6600678.1 Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031316.1 Cytochrome c oxidase subunit 6a, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175 bits (444), Expect = 4.77e-55
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAAFRGAS+NSAQPKRGFASSAHDD  ETAKWEKITYAGI ACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of MC10g0519 vs. NCBI nr
Match: XP_023001309.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 173 bits (438), Expect = 3.93e-54
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAA RGAS+NSAQPKRGFASSAHDD  ETAKWEKITYAGI ACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of MC10g0519 vs. NCBI nr
Match: XP_023545456.1 (cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173 bits (438), Expect = 3.93e-54
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          M+MATIRSNLLRAAFRGAS+NSAQPKRGF+SSAHDD  ETAKWEKITYAGI ACTTLAFY
Sbjct: 1  MSMATIRSNLLRAAFRGASRNSAQPKRGFSSSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of MC10g0519 vs. NCBI nr
Match: KAG7015416.1 (Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172 bits (436), Expect = 7.00e-54
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAAFRGAS+NSAQPKRGFASSAHDD RETAKWEKITYAGI++C+ LAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88
          NLSKGHPH+EEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of MC10g0519 vs. ExPASy TrEMBL
Match: A0A6J1C3V4 (cytochrome c oxidase subunit 6a, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008246 PE=3 SV=1)

HSP 1 Score: 183 bits (464), Expect = 2.05e-58
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of MC10g0519 vs. ExPASy TrEMBL
Match: A0A6J1FPI8 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111447063 PE=3 SV=1)

HSP 1 Score: 175 bits (444), Expect = 2.31e-55
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAAFRGAS+NSAQPKRGFASSAHDD  ETAKWEKITYAGI ACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of MC10g0519 vs. ExPASy TrEMBL
Match: A0A6J1KMD3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111495450 PE=3 SV=1)

HSP 1 Score: 173 bits (438), Expect = 1.90e-54
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAA RGAS+NSAQPKRGFASSAHDD  ETAKWEKITYAGI ACTTLAFY
Sbjct: 1  MAMATIRSNLLRAAIRGASRNSAQPKRGFASSAHDDALETAKWEKITYAGIAACTTLAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88
          NLSKGHPHHEEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of MC10g0519 vs. ExPASy TrEMBL
Match: A0A6J1ERW3 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111435960 PE=3 SV=1)

HSP 1 Score: 172 bits (436), Expect = 3.84e-54
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMATIRSNLLRAAFRGAS+NSAQPKRGFASSAHDD RETAKWEKITYAGI++C+ LAFY
Sbjct: 1  MAMATIRSNLLRAAFRGASRNSAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88
          NLSKGHPH+EEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of MC10g0519 vs. ExPASy TrEMBL
Match: A0A6J1J8L1 (cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111482732 PE=3 SV=1)

HSP 1 Score: 168 bits (425), Expect = 1.83e-52
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSAHDDVRETAKWEKITYAGIIACTTLAFY 60
          MAMA IRSNLLRAAFRGAS+N AQPKRGFASSAHDD RETAKWEKITYAGI++C+ LAFY
Sbjct: 1  MAMAMIRSNLLRAAFRGASRNPAQPKRGFASSAHDDARETAKWEKITYAGIVSCSILAFY 60

Query: 61 NLSKGHPHHEEPPAYPYLHIRNKEFPWG 88
          NLSKGHPH+EEPPAYPYLHIRNKEFPWG
Sbjct: 61 NLSKGHPHYEEPPAYPYLHIRNKEFPWG 88

[Close]

BLAST of MC10g0519 vs. TAIR 10
Match: AT4G37830.1 (cytochrome c oxidase-related )

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-27
Identity = 59/89 (66.29%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSA-HDDVRETAKWEKITYAGIIACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDD  E AKWEKITY GI +CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PPAYP++HIRNKEFPWG
Sbjct: 61 YVLSKGHHHGEDPPAYPHMHIRNKEFPWG 89

[Close]

BLAST of MC10g0519 vs. TAIR 10
Match: AT4G37830.2 (cytochrome c oxidase-related )

HSP 1 Score: 92.4 bits (228), Expect = 1.9e-19
Identity = 51/89 (57.30%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 1  MAMATIRSNLLRAAFRGASQNSAQPKRGFASSA-HDDVRETAKWEKITYAGIIACTTLAF 60
          MA A +RS L RA  R A + S  PKR F+SSA HDD  E AKWEKITY GI +CT LA 
Sbjct: 1  MATAIVRSALSRAVTRAAPKTSVAPKRNFSSSAGHDDAYEAAKWEKITYLGIASCTALAV 60

Query: 61 YNLSKGHPHHEEPPAYPYLHIRNKEFPWG 89
          Y LSKGH H E+PP          EFPWG
Sbjct: 61 YVLSKGHHHGEDPP----------EFPWG 79

The following BLAST results are available for this feature:

BLAST of MC10g0519 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9T070	1.6e-26	66.29	Cytochrome c oxidase subunit 6a, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of MC10g0519 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136571.1	4.23e-58	100.00	cytochrome c oxidase subunit 6a, mitochondrial [Momordica charantia]	[more]
XP_022941809.1	4.77e-55	95.45	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata] >KAG660...	[more]
XP_023001309.1	3.93e-54	94.32	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita maxima]	[more]
XP_023545456.1	3.93e-54	93.18	cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo]	[more]
KAG7015416.1	7.00e-54	92.05	Cytochrome c oxidase subunit 6a, mitochondrial, partial [Cucurbita argyrosperma ...	[more]

BLAST of MC10g0519 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3V4	2.05e-58	100.00	cytochrome c oxidase subunit 6a, mitochondrial OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1FPI8	2.31e-55	95.45	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1KMD3	1.90e-54	94.32	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1ERW3	3.84e-54	92.05	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita moschata OX=366...	[more]
A0A6J1J8L1	1.83e-52	89.77	cytochrome c oxidase subunit 6a, mitochondrial-like OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of MC10g0519 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37830.1	1.1e-27	66.29	cytochrome c oxidase-related	[more]
AT4G37830.2	1.9e-19	57.30	cytochrome c oxidase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001349	Cytochrome c oxidase, subunit VIa	PFAM	PF02046	COX6A	coord: 36..88 e-value: 1.7E-5 score: 25.2
IPR001349	Cytochrome c oxidase, subunit VIa	PANTHER	PTHR11504	CYTOCHROME C OXIDASE POLYPEPTIDE VIA	coord: 1..88
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	GENE3D	4.10.95.10	Cytochrome c oxidase, subunit VIa	coord: 29..88 e-value: 8.6E-14 score: 53.2
IPR036418	Cytochrome c oxidase, subunit VIa superfamily	SUPERFAMILY	81411	Mitochondrial cytochrome c oxidase subunit VIa	coord: 30..88
None	No IPR available	PANTHER	PTHR11504:SF0	CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIAL	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g0519.1	MC10g0519.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006123	mitochondrial electron transport, cytochrome c to oxygen
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005751	mitochondrial respiratory chain complex IV
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0004129	cytochrome-c oxidase activity
molecular_function	GO:0030234	enzyme regulator activity