MC10g0421 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g0421
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionpentatricopeptide repeat-containing protein At3g24000, mitochondrial
LocationMC10: 3432245 .. 3432343 (-)
RNA-Seq ExpressionMC10g0421
SyntenyMC10g0421
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCGAGGTATAGCAATAACGGAAGAATTTTTGGGTTGTTGCAATTTATTACTGATTTTGGGGTCTACTTAGCAAGAAGGTTAGTTAGAGCAAACCGA

mRNA sequence

ATCTCGAGGTATAGCAATAACGGAAGAATTTTTGGGTTGTTGCAATTTATTACTGATTTTGGGGTCTACTTAGCAAGAAGGTTAGTTAGAGCAAACCGA

Coding sequence (CDS)

ATCTCGAGGTATAGCAATAACGGAAGAATTTTTGGGTTGTTGCAATTTATTACTGATTTTGGGGTCTACTTAGCAAGAAGGTTAGTTAGAGCAAACCGA

Protein sequence

ISRYSNNGRIFGLLQFITDFGVYLARRLVRANR
Homology
BLAST of MC10g0421 vs. NCBI nr
Match: XP_022149179.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022149180.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia] >XP_022149182.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 1.97e-08
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0

Query: 1  ISRYSNNGRIFGLLQFITDFGVYLARR 27
          ISRYSNNGRIFGLLQFITDFGVYLARR
Sbjct: 15 ISRYSNNGRIFGLLQFITDFGVYLARR 41

BLAST of MC10g0421 vs. NCBI nr
Match: XP_008456092.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X2 [Cucumis melo])

HSP 1 Score: 47.4 bits (111), Expect = 1.26e-04
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0

Query: 1  ISRYSNNGRIFGLLQFITDFGVYLARR 27
          I +YSN GRIFGLLQFIT+FGV LARR
Sbjct: 15 ILKYSNKGRIFGLLQFITEFGVNLARR 41

BLAST of MC10g0421 vs. NCBI nr
Match: XP_008456095.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X3 [Cucumis melo])

HSP 1 Score: 47.4 bits (111), Expect = 1.26e-04
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0

Query: 1  ISRYSNNGRIFGLLQFITDFGVYLARR 27
          I +YSN GRIFGLLQFIT+FGV LARR
Sbjct: 15 ILKYSNKGRIFGLLQFITEFGVNLARR 41

BLAST of MC10g0421 vs. NCBI nr
Match: XP_022984381.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 [Cucurbita maxima])

HSP 1 Score: 47.4 bits (111), Expect = 1.26e-04
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0

Query: 1  ISRYSNNGRIFGLLQFITDFGVYLARR 27
          I +YSN GR FGLLQFITDFGV LARR
Sbjct: 15 ILKYSNKGRFFGLLQFITDFGVNLARR 41

BLAST of MC10g0421 vs. NCBI nr
Match: XP_011651270.1 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 [Cucumis sativus] >XP_011651271.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 [Cucumis sativus] >XP_031738959.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 [Cucumis sativus] >XP_031738960.1 pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 [Cucumis sativus] >KAE8650523.1 hypothetical protein Csa_010428 [Cucumis sativus])

HSP 1 Score: 47.4 bits (111), Expect = 1.26e-04
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0

Query: 1  ISRYSNNGRIFGLLQFITDFGVYLARR 27
          I +YSN GRIFGLLQFIT+FGV LARR
Sbjct: 15 ILKYSNKGRIFGLLQFITEFGVNLARR 41

BLAST of MC10g0421 vs. ExPASy TrEMBL
Match: A0A6J1D755 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111017668 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.55e-09
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0

Query: 1  ISRYSNNGRIFGLLQFITDFGVYLARR 27
          ISRYSNNGRIFGLLQFITDFGVYLARR
Sbjct: 15 ISRYSNNGRIFGLLQFITDFGVYLARR 41

BLAST of MC10g0421 vs. ExPASy TrEMBL
Match: A0A1S3C3P4 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496132 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 6.12e-05
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0

Query: 1  ISRYSNNGRIFGLLQFITDFGVYLARR 27
          I +YSN GRIFGLLQFIT+FGV LARR
Sbjct: 15 ILKYSNKGRIFGLLQFITEFGVNLARR 41

BLAST of MC10g0421 vs. ExPASy TrEMBL
Match: A0A0A0LAC1 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G215600 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 6.12e-05
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 0

Query: 1  ISRYSNNGRIFGLLQFITDFGVYLARR 27
          I +YSN GRIFGLLQFIT+FGV LARR
Sbjct: 15 ILKYSNKGRIFGLLQFITEFGVNLARR 41

BLAST of MC10g0421 vs. ExPASy TrEMBL
Match: A0A6J1E5W6 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430871 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 6.12e-05
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0

Query: 1  ISRYSNNGRIFGLLQFITDFGVYLARR 27
          I +YSN GR FGLLQFITDFGV LARR
Sbjct: 15 ILKYSNKGRFFGLLQFITDFGVNLARR 41

BLAST of MC10g0421 vs. ExPASy TrEMBL
Match: A0A6J1J531 (pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482698 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 6.12e-05
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 0

Query: 1  ISRYSNNGRIFGLLQFITDFGVYLARR 27
          I +YSN GR FGLLQFITDFGV LARR
Sbjct: 15 ILKYSNKGRFFGLLQFITDFGVNLARR 41

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022149179.11.97e-08100.00pentatricopeptide repeat-containing protein At3g24000, mitochondrial [Momordica ... [more]
XP_008456092.11.26e-0481.48PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial ... [more]
XP_008456095.11.26e-0481.48PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial ... [more]
XP_022984381.11.26e-0481.48pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 ... [more]
XP_011651270.11.26e-0481.48pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 ... [more]
Match NameE-valueIdentityDescription
A0A6J1D7559.55e-09100.00pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Momordic... [more]
A0A1S3C3P46.12e-0581.48pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X2 ... [more]
A0A0A0LAC16.12e-0581.48DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G2156... [more]
A0A6J1E5W66.12e-0581.48pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 ... [more]
A0A6J1J5316.12e-0581.48pentatricopeptide repeat-containing protein At3g24000, mitochondrial isoform X1 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g0421.1MC10g0421.1mRNA