MC10g0377 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g0377
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Gibberellin regulated protein
Location	MC10: 3011243 .. 3011419 (+)
RNA-Seq Expression	MC10g0377
Synteny	MC10g0377

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGACAAACAGTGCAAGAAGAGATGCTCAAAAGCAGGAGTGATGGACAGATGCATAAAGTATTGTGGAATTTGCTGTGGCTATTGCAAGTGTGTTCCTTCTGGGACTTATGGGAACAAGCATGAGTGCCCTTGCTATAGGGACATGAGGAGTTCTAAGGGTAAGCCCAAGTGCCCT

mRNA sequence

TGTGACAAACAGTGCAAGAAGAGATGCTCAAAAGCAGGAGTGATGGACAGATGCATAAAGTATTGTGGAATTTGCTGTGGCTATTGCAAGTGTGTTCCTTCTGGGACTTATGGGAACAAGCATGAGTGCCCTTGCTATAGGGACATGAGGAGTTCTAAGGGTAAGCCCAAGTGCCCT

Coding sequence (CDS)

TGTGACAAACAGTGCAAGAAGAGATGCTCAAAAGCAGGAGTGATGGACAGATGCATAAAGTATTGTGGAATTTGCTGTGGCTATTGCAAGTGTGTTCCTTCTGGGACTTATGGGAACAAGCATGAGTGCCCTTGCTATAGGGACATGAGGAGTTCTAAGGGTAAGCCCAAGTGCCCT

Protein sequence

CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP

Homology

[Close]

BLAST of MC10g0377 vs. ExPASy Swiss-Prot
Match: Q948Z4 (Snakin-1 OS=Solanum tuberosum OX=4113 GN=SN1 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.6e-25
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 60
          CD +CK RCSKAG+ DRC+KYCGICC  CKCVPSGTYGNKHECPCYRD ++SKGK KCP
Sbjct: 30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88

[Close]

BLAST of MC10g0377 vs. ExPASy Swiss-Prot
Match: P86888 (Peamaclein OS=Prunus persica OX=3760 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.1e-23
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 60
          CD +C  RCSKAG  +RC+KYCGICC  C CVPSGTYGNK ECPCYRD+++SKG PKCP
Sbjct: 5  CDSKCGVRCSKAGYQERCLKYCGICCEKCHCVPSGTYGNKDECPCYRDLKNSKGNPKCP 63

[Close]

BLAST of MC10g0377 vs. ExPASy Swiss-Prot
Match: O82328 (Gibberellin-regulated protein 7 OS=Arabidopsis thaliana OX=3702 GN=GASA7 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 7.8e-22
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1   CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 60
           C ++C+ RC +AG+ DRC+KYCGICC  C+CVPSGTYGNKHEC CYRD  SSKG PKCP
Sbjct: 50  CGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108

[Close]

BLAST of MC10g0377 vs. ExPASy Swiss-Prot
Match: C0HLQ1 (Cypmaclein OS=Cryptomeria japonica OX=3369 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 7.3e-20
Identity = 38/59 (64.41%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 60
          CDK+C +RCSKA   DRC+KYCGICC  C CVP GTYGN+  CPCY ++++SKG  KCP
Sbjct: 5  CDKECNRRCSKASAHDRCLKYCGICCEKCNCVPPGTYGNEDSCPCYANLKNSKGGHKCP 63

[Close]

BLAST of MC10g0377 vs. ExPASy Swiss-Prot
Match: Q8LFM2 (Gibberellin-regulated protein 10 OS=Arabidopsis thaliana OX=3702 GN=GASA10 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-19
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCK-CVPSGTYGNKHECPCYRDMRSSKGKPKCP 60
          C  +C  RCSKAG  DRC+KYC ICC  C  CVPSGTYGNK ECPCYRDM++SKG  KCP
Sbjct: 30 CGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKNSKGTSKCP 89

[Close]

BLAST of MC10g0377 vs. NCBI nr
Match: XP_022149266.1 (peamaclein-like [Momordica charantia])

HSP 1 Score: 139 bits (349), Expect = 3.33e-41
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 59
          CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP
Sbjct: 31 CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 89

[Close]

BLAST of MC10g0377 vs. NCBI nr
Match: XP_038906246.1 (peamaclein-like [Benincasa hispida])

HSP 1 Score: 134 bits (338), Expect = 1.59e-39
Identity = 57/59 (96.61%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 59
          C K+CKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP
Sbjct: 31 CGKKCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 89

[Close]

BLAST of MC10g0377 vs. NCBI nr
Match: KAE8649034.1 (hypothetical protein Csa_014887 [Cucumis sativus])

HSP 1 Score: 134 bits (336), Expect = 3.21e-39
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 59
          CDK+CKKRCSKAGV DRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKG+PKCP
Sbjct: 31 CDKKCKKRCSKAGVKDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGRPKCP 89

[Close]

BLAST of MC10g0377 vs. NCBI nr
Match: KAA0044354.1 (peamaclein-like [Cucumis melo var. makuwa] >TYK29483.1 peamaclein-like [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (330), Expect = 2.64e-38
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 59
          CDK+CKKRCS+AGV DRC+KYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKG+PKCP
Sbjct: 31 CDKKCKKRCSRAGVKDRCMKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGRPKCP 89

[Close]

BLAST of MC10g0377 vs. NCBI nr
Match: PON74748.1 (Gibberellin regulated protein [Parasponia andersonii])

HSP 1 Score: 121 bits (304), Expect = 2.75e-34
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 59
          C  +CK RCSKAGV+DRCIKYCGICC  CKCVPSGTYGNKHECPCYRDMR+SKGKPKCP
Sbjct: 35 CGDKCKTRCSKAGVLDRCIKYCGICCQQCKCVPSGTYGNKHECPCYRDMRNSKGKPKCP 93

[Close]

BLAST of MC10g0377 vs. ExPASy TrEMBL
Match: A0A6J1D7V8 (peamaclein-like OS=Momordica charantia OX=3673 GN=LOC111017729 PE=3 SV=1)

HSP 1 Score: 139 bits (349), Expect = 1.61e-41
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 59
          CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP
Sbjct: 31 CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 89

[Close]

BLAST of MC10g0377 vs. ExPASy TrEMBL
Match: A0A5D3E0A6 (Peamaclein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00810 PE=3 SV=1)

HSP 1 Score: 131 bits (330), Expect = 1.28e-38
Identity = 54/59 (91.53%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 59
          CDK+CKKRCS+AGV DRC+KYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKG+PKCP
Sbjct: 31 CDKKCKKRCSRAGVKDRCMKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGRPKCP 89

[Close]

BLAST of MC10g0377 vs. ExPASy TrEMBL
Match: A0A2P5DN83 (Gibberellin regulated protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_048070 PE=3 SV=1)

HSP 1 Score: 121 bits (304), Expect = 1.33e-34
Identity = 51/59 (86.44%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 59
          C  +CK RCSKAGV+DRCIKYCGICC  CKCVPSGTYGNKHECPCYRDMR+SKGKPKCP
Sbjct: 35 CGDKCKTRCSKAGVLDRCIKYCGICCQQCKCVPSGTYGNKHECPCYRDMRNSKGKPKCP 93

[Close]

BLAST of MC10g0377 vs. ExPASy TrEMBL
Match: A0A7D5NHE3 (Snakin 2 OS=Ocimum basilicum OX=39350 PE=2 SV=1)

HSP 1 Score: 121 bits (303), Expect = 1.68e-34
Identity = 50/59 (84.75%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 59
          C K CK RC+ AGVMDRC+KYCGICC  CKCVPSGTYGNKH+CPCYRDMRSSKGKPKCP
Sbjct: 31 CSKNCKMRCAAAGVMDRCLKYCGICCAKCKCVPSGTYGNKHQCPCYRDMRSSKGKPKCP 89

[Close]

BLAST of MC10g0377 vs. ExPASy TrEMBL
Match: B9R733 (GAST1 protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1588210 PE=3 SV=1)

HSP 1 Score: 120 bits (301), Expect = 3.30e-34
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 59
          CD +C+KRC KAGV DRC+KYCGICC  CKCVPSGTYGNKHECPCYRDM++SKGKPKCP
Sbjct: 30 CDSKCEKRCEKAGVKDRCLKYCGICCEKCKCVPSGTYGNKHECPCYRDMKNSKGKPKCP 88

[Close]

BLAST of MC10g0377 vs. TAIR 10
Match: AT2G14900.1 (Gibberellin-regulated family protein )

HSP 1 Score: 103.6 bits (257), Expect = 5.5e-23
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1   CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 60
           C ++C+ RC +AG+ DRC+KYCGICC  C+CVPSGTYGNKHEC CYRD  SSKG PKCP
Sbjct: 50  CGQKCEGRCKEAGMKDRCLKYCGICCKDCQCVPSGTYGNKHECACYRDKLSSKGTPKCP 108

[Close]

BLAST of MC10g0377 vs. TAIR 10
Match: AT5G59845.1 (Gibberellin-regulated family protein )

HSP 1 Score: 96.3 bits (238), Expect = 8.8e-21
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCK-CVPSGTYGNKHECPCYRDMRSSKGKPKCP 60
          C  +C  RCSKAG  DRC+KYC ICC  C  CVPSGTYGNK ECPCYRDM++SKG  KCP
Sbjct: 30 CGGKCNVRCSKAGRQDRCLKYCNICCEKCNYCVPSGTYGNKDECPCYRDMKNSKGTSKCP 89

[Close]

BLAST of MC10g0377 vs. TAIR 10
Match: AT2G39540.1 (Gibberellin-regulated family protein )

HSP 1 Score: 93.2 bits (230), Expect = 7.5e-20
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 1  CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 60
          C  +C  RCSKAG  + C+KYC ICC  C CVPSGT+G+K ECPCYRDM++SKG  KCP
Sbjct: 29 CGGKCNVRCSKAGQHEECLKYCNICCQKCNCVPSGTFGHKDECPCYRDMKNSKGGSKCP 87

[Close]

BLAST of MC10g0377 vs. TAIR 10
Match: AT1G10588.1 (Gibberellin-regulated family protein )

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-17
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 1  CDKQCKKRCSKAG-VMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 60
          C  +C  RCSKA    + C++ C ICC  C CVPSGTYGNK ECPCYRDM++SKG  KCP
Sbjct: 31 CGGKCSVRCSKADRTHEECLEDCDICCQKCNCVPSGTYGNKDECPCYRDMKNSKGGSKCP 90

[Close]

BLAST of MC10g0377 vs. TAIR 10
Match: AT1G10588.2 (Gibberellin-regulated family protein )

HSP 1 Score: 84.3 bits (207), Expect = 3.5e-17
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 1  CDKQCKKRCSKAG-VMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 60
          C  +C  RCSKA    + C++ C ICC  C CVPSGTYGNK ECPCYRDM++SKG  KCP
Sbjct: 30 CGGKCSVRCSKADRTHEECLEDCDICCQKCNCVPSGTYGNKDECPCYRDMKNSKGGSKCP 89

The following BLAST results are available for this feature:

BLAST of MC10g0377 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q948Z4	2.6e-25	79.66	Snakin-1 OS=Solanum tuberosum OX=4113 GN=SN1 PE=1 SV=1	[more]
P86888	7.1e-23	72.88	Peamaclein OS=Prunus persica OX=3760 PE=1 SV=1	[more]
O82328	7.8e-22	71.19	Gibberellin-regulated protein 7 OS=Arabidopsis thaliana OX=3702 GN=GASA7 PE=3 SV...	[more]
C0HLQ1	7.3e-20	64.41	Cypmaclein OS=Cryptomeria japonica OX=3369 PE=1 SV=1	[more]
Q8LFM2	1.2e-19	70.00	Gibberellin-regulated protein 10 OS=Arabidopsis thaliana OX=3702 GN=GASA10 PE=2 ...	[more]

BLAST of MC10g0377 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149266.1	3.33e-41	100.00	peamaclein-like [Momordica charantia]	[more]
XP_038906246.1	1.59e-39	96.61	peamaclein-like [Benincasa hispida]	[more]
KAE8649034.1	3.21e-39	94.92	hypothetical protein Csa_014887 [Cucumis sativus]	[more]
KAA0044354.1	2.64e-38	91.53	peamaclein-like [Cucumis melo var. makuwa] >TYK29483.1 peamaclein-like [Cucumis ...	[more]
PON74748.1	2.75e-34	86.44	Gibberellin regulated protein [Parasponia andersonii]	[more]

BLAST of MC10g0377 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D7V8	1.61e-41	100.00	peamaclein-like OS=Momordica charantia OX=3673 GN=LOC111017729 PE=3 SV=1	[more]
A0A5D3E0A6	1.28e-38	91.53	Peamaclein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G0081...	[more]
A0A2P5DN83	1.33e-34	86.44	Gibberellin regulated protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_048...	[more]
A0A7D5NHE3	1.68e-34	84.75	Snakin 2 OS=Ocimum basilicum OX=39350 PE=2 SV=1	[more]
B9R733	3.30e-34	83.05	GAST1 protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1588210 PE=3 SV=1	[more]

BLAST of MC10g0377 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G14900.1	5.5e-23	71.19	Gibberellin-regulated family protein	[more]
AT5G59845.1	8.8e-21	70.00	Gibberellin-regulated family protein	[more]
AT2G39540.1	7.5e-20	64.41	Gibberellin-regulated family protein	[more]
AT1G10588.1	3.5e-17	61.67	Gibberellin-regulated family protein	[more]
AT1G10588.2	3.5e-17	61.67	Gibberellin-regulated family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 1..59 e-value: 2.2E-22 score: 78.9
None	No IPR available	PANTHER	PTHR23201:SF88	SNAKIN-1	coord: 1..59
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g0377.1	MC10g0377.1	mRNA