MC10g0373 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g0373
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionmediator of RNA polymerase II transcription subunit 28
LocationMC10: 2982962 .. 2987144 (+)
RNA-Seq ExpressionMC10g0373
SyntenyMC10g0373
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptideutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGATATGGCTGATCGACAACCAATGGATCAACAGCATCAACTTGATCCACAGTTGCAATCCCCGCAGTCACCGAGAGAGGACATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCAAGAGAGTTACAAGCAATAGACCGATCTCCTCACCCTTCTCATCAAAGTCAGTGACTAATCCCTCTCCTGTGTTGCCTGAGTTTCACTAGATTGTGGAGAACATTGGGAACTAGTAATTGGGCTGGTTCCTTTTATATCATTAACATATTTTCTTGCTCTATCATATTCCTCCTTATGATATGATCTCTTGAATTGAATAAGTTGTGTAAAAGAGTTTTATGTGTATAATTGTGGTCAATAACAATATTGCATGAATAACTGGCCTATAGCTTCGGTCTTTGTTGGTGTTGCACTGATTTTCAAATTGGTTATTTGACAAATAAAATTAGAAATCAGAGAAACTCGTAGATCAACAAATAATAAATTGAGCCTCTTCCGAGTTTAGTGCCACTCATGTAGACTGTTCAGTGCCAATTGCTGTCTGCAGGTCTATGTGTTAAACATGCAAACCACGAAAAGTCATTCTTTAGTTTATTTTCCAAAGGAGCCAAAGGAGAGCTTTACTAGCATTTGTCTACAAAACTGTAGAGAGTGGTAAGTTGCCGCACTTCTAAGGAAGTGGTAACTGATGTAGTACTGAAACAAGGTGGGTTGAGATTTGGGCAGCATTTAGAGTGCATACCTTTTGTTTTAATTGAGAAAGGGCTTGGCGTTTCACTCTTTCTCATGGGGTTGTCATGGATTGTCGGCCATACAGATAAGGAAGTCCAAGGAACAATTGTCATTTTATGTTCTTTTAAGGAAGTTAGGGTCTTTAAAGTTCTGAAAAACTGATGTACAACTACAATCCAGATCTTAGTTTTTACCAAGCAGGCAGATGTCTTCAGTTTCTTCATAATATGTAGCATCATATGCATTTCTATGTTTATCAATGGATACTTTAGCAAGTGCTATCTGTTCTGTAGACAACTATAGAGGGACTGTCTCTTGGTATTGTTTCACTCAACCAATTCGTGCTTGTTTGGTTTGCTTTCATCTCTCAAGCACGACAGTTTGTGAAGCAACTTGCTTGACGGTAATTCTTCATGTAATAATCTATGCCTAAACTGTTGTTAATCAGCTCTCTTTCTGAAGCCCATGTTTCTCATCATGCTCTCCCCTATTGCATTTTACTATGGGTCTGCACCTCGACTAGCTGGATCTAATGACTGAACTTTAGTCTTTGATTTTGTTGCATTAAAATTATGTGGATGAGTGATTTTCATTAATTTGTTGTATGAAAATATGTGGATCGGAAGTGACATTTAGATCTAGAAGTAGCAAGACTGTCTGCAATCTGCAACTCTAAAGGCGTTCAATGTAGGACATTTGTAAACAGTGAGTTGAACCAATATTCCTCTGGCTGGGCATTTGTAAATAGTGAAAATGACACCCGATTTTGTTAATGTTTCAGTTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAACTGTACTTCATTGGTTTACAACGTGAGGATCAACCAATCAAAGTGGAAACACTAAGAAAGGTAAGTTAATCAAGCACCGTCCTTTTCAGTTCAAAGAGGAGTGACTCTTGTGATAAATGTAGCACAATTCCTTTTTTAACATTCTGTGTTACTTTTCAGGAGATATCCGCCATTGAGGAGGAACTAAAATTAAAGAATGACATTATCAAGAAGCATGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGCCAAACATAACAATGAATTAGAGAAGGTTTAGTAGCTCCAATAGTCTGCACTATCCAATACTCTATTGTTAAGTTAATTGTAGATGCGATCAATTAATGGGTGGGGTTTGGTGTGGCATATATTGTTCAGTCTCCTTCTTCAGTTGGATCTGTTATGAGTCCATATTTCATACTGACTAGAAAAACGTGGAAAAGTGTAGGGGATTGCAGAGAATGCAATATTGCCAAGTAACTAATATGATATGTATTCATGAAGTTTTGTGTTTCAAAGAAAGCAGTGGACACTAAAACTGCAGAATAGCAAAACGCTGCTATCATAACTGAAGATAATATTCAGGTACAGATCTTAAAGGCTTCCAGTGATTTAAGGCAGAATGTAAAAACAACTGATTTGTGTATCTGGGCAGGTAATGTACAGTTGATTACGTCAAGGAAATTAGACCTCGCTCAAAACTTGCTTCCTTTCCTCCTCTTCAGCTTTGATCCAGGCAGCCTGCAGCATGAAAAAACAATAAGCAAAAGCAACTTCATAATACAATAAGTTAGTGCATTCAAGTCGAAATATCACATATTTACAAACAATTGTATGCAATATTATGTATACCTTGTCTCGTTCAAGTTTGGAGAGATGTGGTTTCATGGAATCTCCCAAACTCAAGCCTCCCCAGGCTGCCTGTAGGTCTCTCTCCCTTGCTTCACGGCGGGATAGAAAGTTTTTGTTCTGATTTTCTGATTCCTGAGAAGACATCAGCTTCTCCCTCTCGAGTCTTGTTCTGTGTTTAACCAGAATTTCATCCAAACCCCCACCAGCTCCTCCATTGGTTACTGAATGCATATTTTTTTCACTTCTCTTTAAGTACTCTGGTATGCATCCCATCTTCTCTTTCTCCAGTTTTGAAACACGCTTTACTAAAATTTCGTCCAAGCTTTGGCAACTAGGTGTACTGCGATTATCCACCTGTTTCTTATTATGTCTTTGCTTATCGTAGTTGCTTTCAGCTAACACGGCTAGCATCTTTTCCCTTTCGAGTCTGTGCACCGGTTTCACTAAGATCTTATCTAAGCTATCTTCCATGTCCCTTCCCATTTTGAATGAAGACTTTGGCATACTAACATTCTCCTTTTCCTCTGGTTCTGTAGCAGAAAGAGATGATTCTTCTGAAGCAGACTTGTAACTTTTCTTCTTCAAGTCCATATCCCGATGTCCTCCTTCACGCAGCTCAATTTTTCTTCTATTTTTTGCTTCTTGTACTTCTTTTTCAAGCCGCGAGACGTGTTTCACAAGATACTTATCAAGACTGGGAACTGCTGGAACTTCTTTATGACTAACAAACGTTTGTCTTGCCTGCAACTTGTTGCTACGAGTTTTGAATTCTTCTCCACCCTTGCGTTTGGTCTCTTGAACTTCCTTCTCAAGATCTGAAGGTGGCTTTGTCAGTACAGTTTCCAAGTTGGGGACAACTTTCTCATCCTGAACACTGCTCAATGGTGGAGGATTTTGTGACGGAGCTTTATCTAAGTCGATCTTCTCTTCCATGGTTACTTCAGAATTCTCTGAGGTCAATTCCTTCGCTTCGTTCTTTCTGCTATTCTTTGCTTCAAGCACCTCTCTTTCCAATTTACTCGTGTGCTTTACCAAGAACTTGTCCAGGCTTGGAAGTCCTGACTCGGCTTGCTTCCTCCCATTATGCGAATTCGATAAGTAGTTTCCAGAACCAACTGACGACGTTCTTCGATCATGAAGCTTGCCACTTTCTACTTCAGCCAAGGCGGCATTCAAACCACAAGTTGCAACTATAGTGGCAAGAGAGGAAAGTTCATCTTCTTTCAAACGCCTAAGCCTTTCATACATCAAGTCCTCGATGTTTGTTACCTTCTCAGAAGTTTTATGTCTCATATGTAAAACCAGCATCTTGCAATCCGAGTTGTTAGAGCTGAAATCATCCTTTCGAGATGCGTCATCAAGTTCCGAGCTGTTCTCTGATTCACATTCGGAAGAATGTTCGGATGAGTCTACATTATTATCACTGTCTGGGTTCTGTGAGATTTTTCGTAGAAGTTCTTTAAAGTCATCTTCTCTTAAAGAAGAGCAGTTCGCAAGCCTAATCAATGCTGTTTTTACTGCAGCAGCCACTTCCTTATCAACCTCAAATTCTGTCTCAAAAGATGCTGTAATGGTGTGAGTTGTAGACCCACCGCCACCAGAAGACAACGTTTCCATTTTGTTCTGTGGACAATTGGGTGTATCATACATGATCACTCCCATAGCTGCAGCTGCTTCGCAAGCTTCAGCTGCGATTTTCTCAGCCCTAAACATCTGGCCTTCAGCTTCTTTAC

mRNA sequence

AAAGATATGGCTGATCGACAACCAATGGATCAACAGCATCAACTTGATCCACAGTTGCAATCCCCGCAGTCACCGAGAGAGGACATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCAAGAGAGTTACAAGCAATAGACCGATCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAACTGTACTTCATTGGTTTACAACGTGAGGATCAACCAATCAAAGTGGAAACACTAAGAAAGGAGATATCCGCCATTGAGGAGGAACTAAAATTAAAGAATGACATTATCAAGAAGCATGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGCCAAACATAACAATGAATTAGAGAAGGTTTAGTAGCTCCAATAGTCTGCACTATCCAATACTCTATTGTTAAGTTAATTGTAGATGCGATCAATTAATGGGTGGGGTTTGGTGTGGCATATATTGTTCAGTCTCCTTCTTCAGTTGGATCTGTTATGAGTCCATATTTCATACTGACTAGAAAAACGTGGAAAAGTGTAGGGGATTGCAGAGAATGCAATATTGCCAAGTAACTAATATGATATGTATTCATGAAGTTTTGTGTTTCAAAGAAAGCAGTGGACACTAAAACTGCAGAATAGCAAAACGCTGCTATCATAACTGAAGATAATATTCAGGTAATGTACAGTTGATTACGTCAAGGAAATTAGACCTCGCTCAAAACTTGCTTCCTTTCCTCCTCTTCAGCTTTGATCCAGGCAGCCTGCAGCATGAAAAAACAATAAGCAAAAGCAACTTCATAATACAATAAGTTAGTGCATTCAAGTCGAAATATCACATATTTACAAACAATTGTATGCAATATTATGTATACCTTGTCTCGTTCAAGTTTGGAGAGATGTGGTTTCATGGAATCTCCCAAACTCAAGCCTCCCCAGGCTGCCTGTAGGTCTCTCTCCCTTGCTTCACGGCGGGATAGAAAGTTTTTGTTCTGATTTTCTGATTCCTGAGAAGACATCAGCTTCTCCCTCTCGAGTCTTGTTCTGTGTTTAACCAGAATTTCATCCAAACCCCCACCAGCTCCTCCATTGGTTACTGAATGCATATTTTTTTCACTTCTCTTTAAGTACTCTGGTATGCATCCCATCTTCTCTTTCTCCAGTTTTGAAACACGCTTTACTAAAATTTCGTCCAAGCTTTGGCAACTAGGTGTACTGCGATTATCCACCTGTTTCTTATTATGTCTTTGCTTATCGTAGTTGCTTTCAGCTAACACGGCTAGCATCTTTTCCCTTTCGAGTCTGTGCACCGGTTTCACTAAGATCTTATCTAAGCTATCTTCCATGTCCCTTCCCATTTTGAATGAAGACTTTGGCATACTAACATTCTCCTTTTCCTCTGGTTCTGTAGCAGAAAGAGATGATTCTTCTGAAGCAGACTTGTAACTTTTCTTCTTCAAGTCCATATCCCGATGTCCTCCTTCACGCAGCTCAATTTTTCTTCTATTTTTTGCTTCTTGTACTTCTTTTTCAAGCCGCGAGACGTGTTTCACAAGATACTTATCAAGACTGGGAACTGCTGGAACTTCTTTATGACTAACAAACGTTTGTCTTGCCTGCAACTTGTTGCTACGAGTTTTGAATTCTTCTCCACCCTTGCGTTTGGTCTCTTGAACTTCCTTCTCAAGATCTGAAGGTGGCTTTGTCAGTACAGTTTCCAAGTTGGGGACAACTTTCTCATCCTGAACACTGCTCAATGGTGGAGGATTTTGTGACGGAGCTTTATCTAAGTCGATCTTCTCTTCCATGGTTACTTCAGAATTCTCTGAGGTCAATTCCTTCGCTTCGTTCTTTCTGCTATTCTTTGCTTCAAGCACCTCTCTTTCCAATTTACTCGTGTGCTTTACCAAGAACTTGTCCAGGCTTGGAAGTCCTGACTCGGCTTGCTTCCTCCCATTATGCGAATTCGATAAGTAGTTTCCAGAACCAACTGACGACGTTCTTCGATCATGAAGCTTGCCACTTTCTACTTCAGCCAAGGCGGCATTCAAACCACAAGTTGCAACTATAGTGGCAAGAGAGGAAAGTTCATCTTCTTTCAAACGCCTAAGCCTTTCATACATCAAGTCCTCGATGTTTGTTACCTTCTCAGAAGTTTTATGTCTCATATGTAAAACCAGCATCTTGCAATCCGAGTTGTTAGAGCTGAAATCATCCTTTCGAGATGCGTCATCAAGTTCCGAGCTGTTCTCTGATTCACATTCGGAAGAATGTTCGGATGAGTCTACATTATTATCACTGTCTGGGTTCTGTGAGATTTTTCGTAGAAGTTCTTTAAAGTCATCTTCTCTTAAAGAAGAGCAGTTCGCAAGCCTAATCAATGCTGTTTTTACTGCAGCAGCCACTTCCTTATCAACCTCAAATTCTGTCTCAAAAGATGCTGTAATGGTGTGAGTTGTAGACCCACCGCCACCAGAAGACAACGTTTCCATTTTGTTCTGTGGACAATTGGGTGTATCATACATGATCACTCCCATAGCTGCAGCTGCTTCGCAAGCTTCAGCTGCGATTTTCTCAGCCCTAAACATCTGGCCTTCAGCTTCTTTAC

Coding sequence (CDS)

AAAGATATGGCTGATCGACAACCAATGGATCAACAGCATCAACTTGATCCACAGTTGCAATCCCCGCAGTCACCGAGAGAGGACATGATTGCATATGTGATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCAAGAGAGTTACAAGCAATAGACCGATCTCCTCACCCTTCTCATCAAATTGACGTGGAGAGACATGCTAGGGATTTTATGGAGGCAGCTAAAAAGCTTCAACTGTACTTCATTGGTTTACAACGTGAGGATCAACCAATCAAAGTGGAAACACTAAGAAAGGAGATATCCGCCATTGAGGAGGAACTAAAATTAAAGAATGACATTATCAAGAAGCATGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTAGCCAAACATAACAATGAATTAGAGAAGGTTTAG

Protein sequence

KDMADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLIEGWKKDLKDQLAKHNNELEKV
Homology
[Close]
BLAST of MC10g0373 vs. ExPASy Swiss-Prot
Match: Q9LFA5 (Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana OX=3702 GN=MED28 PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.9e-40
Identity = 88/135 (65.19%), Postives = 112/135 (82.96%), Query Frame = 0 

Query: 17  PQLQSPQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 76
           P ++SP++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR
Sbjct: 22  PGIRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 81

Query: 77  DFMEAAKKLQLYFIGLQREDQ-PIKVETLRKEISAIEEELKLKNDIIKKHERLIEGWKKD 136
           DFMEAAKKLQLYF+GL+RED+ P + E+L+K+I+ +EEELK K+++IKKH RL +  +K 
Sbjct: 82  DFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKL 141

Query: 137 LKDQLAKHNNELEKV 144
           +K+Q+ KH +ELEKV
Sbjct: 142 VKEQIEKHRDELEKV 156

[Close]
BLAST of MC10g0373 vs. NCBI nr
Match: XP_022149222.1 (mediator of RNA polymerase II transcription subunit 28 [Momordica charantia])

HSP 1 Score: 272 bits (696), Expect = 6.82e-92
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 3   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 62
           MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 63  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 122
           DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120

Query: 123 EGWKKDLKDQLAKHNNELEKV 143
           EGWKKDLKDQLAKHNNELEKV
Sbjct: 121 EGWKKDLKDQLAKHNNELEKV 141

[Close]
BLAST of MC10g0373 vs. NCBI nr
Match: XP_038904970.1 (mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904972.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904973.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_038904974.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida])

HSP 1 Score: 254 bits (649), Expect = 1.00e-84
Identity = 132/141 (93.62%), Postives = 136/141 (96.45%), Query Frame = 0 

Query: 3   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 62
           MA+RQP+DQQH LDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPLDQQHPLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 63  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 122
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLKN+IIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPNKVETLRKEISAIEEELKLKNEIIKKQERLI 120

Query: 123 EGWKKDLKDQLAKHNNELEKV 143
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of MC10g0373 vs. NCBI nr
Match: XP_004152267.1 (mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus] >KGN52780.1 hypothetical protein Csa_014841 [Cucumis sativus])

HSP 1 Score: 253 bits (645), Expect = 4.09e-84
Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 0 

Query: 3   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 62
           MA+RQP+DQQH LDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 63  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 122
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELK+KN+IIKK E+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 123 EGWKKDLKDQLAKHNNELEKV 143
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of MC10g0373 vs. NCBI nr
Match: XP_022922953.1 (mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022922954.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_022984538.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_022984539.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita maxima] >XP_023552182.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo] >XP_023552183.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita pepo subsp. pepo] >KAG6576925.1 Mediator of RNA polymerase II transcription subunit 28, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014951.1 Mediator of RNA polymerase II transcription subunit 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252 bits (644), Expect = 5.81e-84
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0 

Query: 3   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 62
           MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 63  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 122
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLK+DIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 123 EGWKKDLKDQLAKHNNELEKV 143
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of MC10g0373 vs. NCBI nr
Match: XP_008454378.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo] >XP_008454380.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo] >KAA0044351.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis melo var. makuwa] >TYK29480.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (635), Expect = 1.37e-82
Identity = 129/141 (91.49%), Postives = 134/141 (95.04%), Query Frame = 0 

Query: 3   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 62
           MA+RQ +DQQH LDPQ QS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 63  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 122
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELK+KNDIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 123 EGWKKDLKDQLAKHNNELEKV 143
           EGWKKDLK+QL KHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

[Close]
BLAST of MC10g0373 vs. ExPASy TrEMBL
Match: A0A6J1D7C5 (mediator of RNA polymerase II transcription subunit 28 OS=Momordica charantia OX=3673 GN=LOC111017697 PE=4 SV=1)

HSP 1 Score: 272 bits (696), Expect = 3.30e-92
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 3   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 62
           MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 63  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 122
           DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 120

Query: 123 EGWKKDLKDQLAKHNNELEKV 143
           EGWKKDLKDQLAKHNNELEKV
Sbjct: 121 EGWKKDLKDQLAKHNNELEKV 141

[Close]
BLAST of MC10g0373 vs. ExPASy TrEMBL
Match: A0A0A0KT19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1)

HSP 1 Score: 253 bits (645), Expect = 1.98e-84
Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 0 

Query: 3   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 62
           MA+RQP+DQQH LDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQPIDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 63  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 122
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELK+KN+IIKK E+LI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNEIIKKQEKLI 120

Query: 123 EGWKKDLKDQLAKHNNELEKV 143
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of MC10g0373 vs. ExPASy TrEMBL
Match: A0A6J1JAT8 (mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita maxima OX=3661 GN=LOC111482804 PE=4 SV=1)

HSP 1 Score: 252 bits (644), Expect = 2.81e-84
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0 

Query: 3   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 62
           MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 63  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 122
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLK+DIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 123 EGWKKDLKDQLAKHNNELEKV 143
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of MC10g0373 vs. ExPASy TrEMBL
Match: A0A6J1E897 (mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita moschata OX=3662 GN=LOC111430779 PE=4 SV=1)

HSP 1 Score: 252 bits (644), Expect = 2.81e-84
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0 

Query: 3   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 62
           MA+RQP+DQQ+Q+DPQLQS QSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQI
Sbjct: 1   MAERQPLDQQNQIDPQLQSSQSPREDMVSYVMALEAALLPCLPARELQAIDRSPHPSHQI 60

Query: 63  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 122
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELKLK+DIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKDDIIKKQERLI 120

Query: 123 EGWKKDLKDQLAKHNNELEKV 143
           EGWKKDLKDQL KHNNELEKV
Sbjct: 121 EGWKKDLKDQLDKHNNELEKV 141

[Close]
BLAST of MC10g0373 vs. ExPASy TrEMBL
Match: A0A1S3BZ89 (mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 GN=LOC103494796 PE=4 SV=1)

HSP 1 Score: 249 bits (635), Expect = 6.62e-83
Identity = 129/141 (91.49%), Postives = 134/141 (95.04%), Query Frame = 0 

Query: 3   MADRQPMDQQHQLDPQLQSPQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQI 62
           MA+RQ +DQQH LDPQ QS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+
Sbjct: 1   MAERQSLDQQHSLDPQSQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQV 60

Query: 63  DVERHARDFMEAAKKLQLYFIGLQREDQPIKVETLRKEISAIEEELKLKNDIIKKHERLI 122
           DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEISAIEEELK+KNDIIKK ERLI
Sbjct: 61  DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKNDIIKKQERLI 120

Query: 123 EGWKKDLKDQLAKHNNELEKV 143
           EGWKKDLK+QL KHNNELEKV
Sbjct: 121 EGWKKDLKEQLDKHNNELEKV 141

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BLAST of MC10g0373 vs. TAIR 10
Match: AT3G52860.1 (unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 41; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 164.9 bits (416), Expect = 4.9e-41
Identity = 88/135 (65.19%), Postives = 112/135 (82.96%), Query Frame = 0 

Query: 17  PQLQSPQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 76
           P ++SP++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR
Sbjct: 22  PGIRSPETPSNNQNNDIEDIMACVTALEAALLPCLPARELQAIDRSPHPSHQIDVERHAR 81

Query: 77  DFMEAAKKLQLYFIGLQREDQ-PIKVETLRKEISAIEEELKLKNDIIKKHERLIEGWKKD 136
           DFMEAAKKLQLYF+GL+RED+ P + E+L+K+I+ +EEELK K+++IKKH RL +  +K 
Sbjct: 82  DFMEAAKKLQLYFMGLKREDRAPSRAESLKKDIAVMEEELKTKDELIKKHMRLFQESQKL 141

Query: 137 LKDQLAKHNNELEKV 144
           +K+Q+ KH +ELEKV
Sbjct: 142 VKEQIEKHRDELEKV 156

The following BLAST results are available for this feature:
BLAST of MC10g0373 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LFA56.9e-4065.19Mediator of RNA polymerase II transcription subunit 28 OS=Arabidopsis thaliana O... [more]
BLAST of MC10g0373 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022149222.16.82e-92100.00mediator of RNA polymerase II transcription subunit 28 [Momordica charantia][more]
XP_038904970.11.00e-8493.62mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida] >XP_0... [more]
XP_004152267.14.09e-8492.20mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus] >KGN527... [more]
XP_022922953.15.81e-8492.20mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata] >XP_... [more]
XP_008454378.11.37e-8291.49PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]... [more]
BLAST of MC10g0373 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D7C53.30e-92100.00mediator of RNA polymerase II transcription subunit 28 OS=Momordica charantia OX... [more]
A0A0A0KT191.98e-8492.20Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G00990 PE=4 SV=1[more]
A0A6J1JAT82.81e-8492.20mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita maxima OX=36... [more]
A0A6J1E8972.81e-8492.20mediator of RNA polymerase II transcription subunit 28 OS=Cucurbita moschata OX=... [more]
A0A1S3BZ896.62e-8391.49mediator of RNA polymerase II transcription subunit 28 OS=Cucumis melo OX=3656 G... [more]
BLAST of MC10g0373 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52860.14.9e-4165.19unknown protein; Has 86 Blast hits to 86 proteins in 36 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..143
NoneNo IPR availablePFAMPF11594Med28coord: 32..127
e-value: 2.0E-18
score: 66.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR39117:SF1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 28coord: 3..143
IPR034456Mediator of RNA polymerase II transcription subunit 28PANTHERPTHR39117MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 28coord: 3..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g0373.1MC10g0373.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016592 mediator complex