MC10g0255 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g0255
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	light-harvesting complex-like protein 3 isotype 1, chloroplastic
Location	MC10: 1991990 .. 1994146 (-)
RNA-Seq Expression	MC10g0255
Synteny	MC10g0255

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGCTGCTATCTCAGCCTCATTGCCAACAGTATGCACTTCACAACATCATGTCTCCAAGAAGAAACAGCATGCTCATTATCAAGCCAGACCCGCCTATTCCTTCCCGGCCCCGGAAGTCGTTAGTACTATCAATGTTGATGGTGGGGGTCGGGACAGTTTCGACACTGCTGAACGACACGGTAGAGACAAGCTAAATGAAGATACTGATGCATGGAACCATGGAGAAAGGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTTAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTCATTGTTGCAGGTAAATGTAAACCGAATCCTTCGTTTAGTGATTAAATTTATCGTAACCTATCAATATCATAATTTAAACATGTGATTTTTTAAGAGCAGAGATTTATGATTTCTGATAATAAATGAAAGGGATATATATATATATATGCTAAATTACAAACATATCCCTAAACTTTATCCATTTGTTTAAAAAAATGTTCTTATTCTTTTATTGACCTTTCATAGACCTTTCAAAAATATCATTTGAGTGAACACTTGTTAATATTTTGACCAAAAAAATTGACATGATAGAATTTGGAACGACGTGACAATAAGCAATCATATTTTAAAAAGGGGATGAGCGTAAAATTGGGTACACAATCGAAAAGCAAACTCTATTGACAATAGATTAAGTGGAAGAACCTATATGCCACGTCAACTTCCACGTTGTTGTTCCAGATTCTGCTACACCAACTTTGCATTCAAAATATTGAAACAATGTTTGTTAAAAGAGTATTTTTTAAACCAATCACAAAATTCGAGGTCTTTATTTATTTATTTATTATTTTTTTAAATTAACCATTTTTTCTTTTTCTATGTTAAATTGCAATGGGTTTACACTTAAATTTTTAAATGTAGAGGCAAAGAGGAGGAAGATTCTTGAAATATATCCAGAAGCAGCTACAAATCAGCATCCAGTGCTCTTCAGAAGCTCCATCATTCCATGGTGGGCATGGCTCTCAAACTCATACCTCCCACAGGCAGAGCTACTTAATGGTACTAATTTAAGAGTTTTTTTGGTTAAAATTTTAATGAATGTTTTTAACTAATTAAATGATGAGAAAATCTAAAAACAAATAAAAAGTACTTAAAATGCTTGTGGATGAAACATTTAATTAGATTTTTAAAAATATAAATGCTTCACTTTAAAACACTTTTCATAAAACTACTTTTGGTAGAAAATTAGTTCTTCAACCGGAAAAGACACTTTTGACCGCTTTTTCAAAATTTAACCAAACACGGCTAGGTGTTATAAAATTACTTTTACCCATCCATTAAACTGATAACTATTAAATTTTCAGTCTTCTATTTTATTAAAAAAAAAAGTTTCTCTTTTTTTTCTTAAAAATTTCAATTATGTACGATGACCCTCCATGGATTCGCCTATATAAGCCGCCGCTAAAATTACAAAAATAAGAAGTCTTCTTTCGTTTCTCAATGGTGAAGTAAGACTAAGCTCATGAGCTTATTATCCTACGTCGGAACAAGCTGATAGGATCTCATTTTTTACGTCTCCATGTCCCGCCCGTGTGGGTCTCCGTGATCCAAAACGAAACCGATCCTGTCGGATATGTATATTGAAATTGTGTGACCCTCCGATTTGCAAGACAATTTGGTTTTGACTAATGAATTCTGACACCCGGTCACGACGTCAATCAAGCGCGTCATTTTTAACCTTTTGGAACTAGTGACGATATACGTTTTATAAATACTTTGAGTAAAGTATCATTTCTTTATTATTTTTTCCCTAATATTACATCATTCAAGGGGTGAGGATTCAAACATTTGACTTAGGAAAAAAAAAACTATTAATATTTTAACAAGTTGAATTATCCTCGTATTACCTGATTGTTAATATTTTCTATCGGTGTAGGTAGGGCGGCAATGTTAGGGTTCTTCGTGGCCTACGTAGTAGATGCATTAACAGGAATTGGAATAGTTTGGCAAAGTGGTAATTTCCTATGCAAATCAGCTCTTTTTGTAACCGTCATTAGTGTGTTACTGTTTAGGCAAACTGAGGATGCTGAGGGCTTGAGAAAGCTAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAAGCTTCC

mRNA sequence

TCTGCTGCTATCTCAGCCTCATTGCCAACAGTATGCACTTCACAACATCATGTCTCCAAGAAGAAACAGCATGCTCATTATCAAGCCAGACCCGCCTATTCCTTCCCGGCCCCGGAAGTCGTTAGTACTATCAATGTTGATGGTGGGGGTCGGGACAGTTTCGACACTGCTGAACGACACGGTAGAGACAAGCTAAATGAAGATACTGATGCATGGAACCATGGAGAAAGGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTTAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTCATTGTTGCAGAGGCAAAGAGGAGGAAGATTCTTGAAATATATCCAGAAGCAGCTACAAATCAGCATCCAGTGCTCTTCAGAAGCTCCATCATTCCATGGTGGGCATGGCTCTCAAACTCATACCTCCCACAGGCAGAGCTACTTAATGGTAGGGCGGCAATGTTAGGGTTCTTCGTGGCCTACGTAGTAGATGCATTAACAGGAATTGGAATAGTTTGGCAAAGTGGTAATTTCCTATGCAAATCAGCTCTTTTTGTAACCGTCATTAGTGTGTTACTGTTTAGGCAAACTGAGGATGCTGAGGGCTTGAGAAAGCTAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAAGCTTCC

Coding sequence (CDS)

TCTGCTGCTATCTCAGCCTCATTGCCAACAGTATGCACTTCACAACATCATGTCTCCAAGAAGAAACAGCATGCTCATTATCAAGCCAGACCCGCCTATTCCTTCCCGGCCCCGGAAGTCGTTAGTACTATCAATGTTGATGGTGGGGGTCGGGACAGTTTCGACACTGCTGAACGACACGGTAGAGACAAGCTAAATGAAGATACTGATGCATGGAACCATGGAGAAAGGTTCACAGATGAGAGATGGAAAAATGGGACATGGGATCTTAATATGTTTGTGAAGAATGGCAAGATGGATTGGGAAGGTGTCATTGTTGCAGAGGCAAAGAGGAGGAAGATTCTTGAAATATATCCAGAAGCAGCTACAAATCAGCATCCAGTGCTCTTCAGAAGCTCCATCATTCCATGGTGGGCATGGCTCTCAAACTCATACCTCCCACAGGCAGAGCTACTTAATGGTAGGGCGGCAATGTTAGGGTTCTTCGTGGCCTACGTAGTAGATGCATTAACAGGAATTGGAATAGTTTGGCAAAGTGGTAATTTCCTATGCAAATCAGCTCTTTTTGTAACCGTCATTAGTGTGTTACTGTTTAGGCAAACTGAGGATGCTGAGGGCTTGAGAAAGCTAGCTGAAGAAGCCACCTTCTATGACAAGCAATGGCAAGCTTCC

Protein sequence

SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSFPAPEVVSTINVDGGGRDSFDTAERHGRDKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKILEIYPEAATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALTGIGIVWQSGNFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS

Homology

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BLAST of MC10g0255 vs. ExPASy Swiss-Prot
Match: Q9SYX1 (Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.1 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.1e-51
Identity = 93/148 (62.84%), Postives = 112/148 (75.68%), Query Frame = 0


Query: 77  RFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKILEIYPEAATNQHPVLFRSSIIP 136
           +F D RW NGTWDL  F K+GK DW+ VIVAEAKRRK LE  PE  +N  PVLF +SIIP
Sbjct: 101 KFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIP 160

Query: 137 WWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALTGIGIVWQSGNFLCKSALFVTVISVL 196
           WWAW+   +LP+AELLNGRAAM+GFF+AY VD+LTG+G+V Q GNF CK+ LFV V  VL
Sbjct: 161 WWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 220

Query: 197 LFRQTEDAEGLRKLAEEATFYDKQWQAS 225
             R+ ED + L+ L +E T YDKQWQA+
Sbjct: 221 FIRKNEDVDKLKNLFDETTLYDKQWQAA 248

[Close]

BLAST of MC10g0255 vs. ExPASy Swiss-Prot
Match: Q6NKS4 (Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIL3.2 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.1e-47
Identity = 87/148 (58.78%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 77  RFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKILEIYPEAATNQHPVLFRSSIIP 136
           ++ + +W NGTWDL  F K+GK DW+ VIV+EAKRRK LE  PE  +N   V+F +SIIP
Sbjct: 98  KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query: 137 WWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALTGIGIVWQSGNFLCKSALFVTVISVL 196
           WWAW+   +LP+AELLNGRAAM+GFF+AY VD+LTG+G+V Q GNF CK+ LFV V  VL
Sbjct: 158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

Query: 197 LFRQTEDAEGLRKLAEEATFYDKQWQAS 225
             R+ ED + L+ L +E T YDKQWQA+
Sbjct: 218 FIRKNEDLDKLKDLFDETTLYDKQWQAA 245

[Close]

BLAST of MC10g0255 vs. NCBI nr
Match: XP_022141114.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Momordica charantia])

HSP 1 Score: 461 bits (1186), Expect = 6.49e-163
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSFPAPEVVSTINVDGGGRDSFDTAERH 60
           SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSFPAPEVVSTINVDGGGRDSFDTAERH
Sbjct: 5   SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSFPAPEVVSTINVDGGGRDSFDTAERH 64

Query: 61  GRDKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKILEIYPE 120
           GRDKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKILEIYPE
Sbjct: 65  GRDKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKILEIYPE 124

Query: 121 AATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALTGIGIVWQSG 180
           AATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALTGIGIVWQSG
Sbjct: 125 AATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALTGIGIVWQSG 184

Query: 181 NFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS 224
           NFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS
Sbjct: 185 NFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS 228

[Close]

BLAST of MC10g0255 vs. NCBI nr
Match: XP_023551912.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 338 bits (866), Expect = 6.76e-115
Identity = 176/233 (75.54%), Postives = 191/233 (81.97%), Query Frame = 0


Query: 1   SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSF----PAPEVVSTINVDGGGRDSFDT 60
           S AISAS P  CTS H VSK +QHA  QARP +S     P PE++ T +V  G RD+FD 
Sbjct: 3   SIAISASFPRSCTSNH-VSKNQQHAR-QARPTHSSMTKNPTPELIRTPDV--GDRDAFDA 62

Query: 61  AERHGR-----DKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 120
            +RHG      DKL EDTD  NHG+ FTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR
Sbjct: 63  PKRHGNVASATDKLEEDTDDLNHGKTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 122

Query: 121 RKILEIYPEAATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALT 180
           RK LE+YPE ATN  PVLFRSSIIPWWAWL+ SYLPQAELLNGRAAM+GFF+AY+VDALT
Sbjct: 123 RKFLELYPETATNHEPVLFRSSIIPWWAWLTRSYLPQAELLNGRAAMIGFFMAYLVDALT 182

Query: 181 GIGIVWQSGNFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS 224
           GIGIV QSGNF+ KSALFVTVI VLLFRQT+D EGLRKLAEEATFYDKQWQAS
Sbjct: 183 GIGIVGQSGNFISKSALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQAS 231

[Close]

BLAST of MC10g0255 vs. NCBI nr
Match: XP_022984403.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 335 bits (860), Expect = 2.81e-113
Identity = 177/234 (75.64%), Postives = 192/234 (82.05%), Query Frame = 0


Query: 1   SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSF----PAPEVVSTINVDGGGRDS-FD 60
           S AISAS    CTS H VSKK+QHA  QARP YS     P PE++ T +V  G RD+ FD
Sbjct: 49  SIAISASFRRSCTSNH-VSKKQQHAR-QARPTYSSMTKNPTPELIRTPDV--GNRDAAFD 108

Query: 61  TAERHGR-----DKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 120
             +RHG      DKL EDTD  NHG+ FTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK
Sbjct: 109 APKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 168

Query: 121 RRKILEIYPEAATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDAL 180
           RRK LE+YPE ATNQ PVLFRSSIIPWWAWL+ SYLPQAELLNGRAAM+GFF+AY+VDAL
Sbjct: 169 RRKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDAL 228

Query: 181 TGIGIVWQSGNFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS 224
           TGIGIV QSGNF+ K+ALFVTVI VLLFRQT+D EGLRKLAEEATFYDKQWQAS
Sbjct: 229 TGIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQAS 278

[Close]

BLAST of MC10g0255 vs. NCBI nr
Match: XP_022922577.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 331 bits (848), Expect = 3.59e-112
Identity = 173/233 (74.25%), Postives = 187/233 (80.26%), Query Frame = 0


Query: 1   SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSF----PAPEVVSTINVDGGGRDSFDT 60
           S AISAS P  CTS H VS K+Q    QARP YS     P PE++ T  V  G RD+ D 
Sbjct: 3   SIAISASFPRSCTSNH-VSNKQQRR--QARPTYSSMTKNPTPELIKTPYV--GDRDALDA 62

Query: 61  AERHGR-----DKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 120
            +RHG      DKL EDTD  NHG+ FTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR
Sbjct: 63  PKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 122

Query: 121 RKILEIYPEAATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALT 180
           RK LE+YPE ATN  PVLFRSSIIPWWAWL+ SYLPQAELLNGRAAM+GFF+AY+VDALT
Sbjct: 123 RKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALT 182

Query: 181 GIGIVWQSGNFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS 224
           GIGIV QSGNF+ K+ALFVTVI VLLFRQT+D EGLRKLAEEATFYDKQWQAS
Sbjct: 183 GIGIVGQSGNFISKAALFVTVIGVLLFRQTKDIEGLRKLAEEATFYDKQWQAS 230

[Close]

BLAST of MC10g0255 vs. NCBI nr
Match: XP_038875279.1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 319 bits (817), Expect = 1.08e-107
Identity = 161/229 (70.31%), Postives = 178/229 (77.73%), Query Frame = 0


Query: 1   SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSFPAPEVVSTINVDGGGRDSFDTAERH 60
           S AISASLP   TS H   KK              P  +V+ST++V  G RD     ERH
Sbjct: 3   SIAISASLPRASTSNHVFVKKN-------------PTQKVISTLDV--GDRDGVGAVERH 62

Query: 61  G-----RDKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKIL 120
           G     R+K+ ED D WNHGE+FTD+RWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRK L
Sbjct: 63  GNVASAREKVEEDNDDWNHGEKFTDKRWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKFL 122

Query: 121 EIYPEAATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALTGIGI 180
           E+YPEAATNQ PVLFRSS+IPWWAWL+ SYLPQAELLNGRAAM+GFF+AY+VDALTGIGI
Sbjct: 123 ELYPEAATNQEPVLFRSSVIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYIVDALTGIGI 182

Query: 181 VWQSGNFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS 224
           V QSGNF+CK+ALF TVI VLLFRQTED E LR +AEEAT YDKQWQ S
Sbjct: 183 VGQSGNFICKAALFFTVIGVLLFRQTEDIESLRNIAEEATLYDKQWQTS 216

[Close]

BLAST of MC10g0255 vs. ExPASy TrEMBL
Match: A0A6J1CHN0 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011587 PE=4 SV=1)

HSP 1 Score: 461 bits (1186), Expect = 3.14e-163
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0


Query: 1   SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSFPAPEVVSTINVDGGGRDSFDTAERH 60
           SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSFPAPEVVSTINVDGGGRDSFDTAERH
Sbjct: 5   SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSFPAPEVVSTINVDGGGRDSFDTAERH 64

Query: 61  GRDKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKILEIYPE 120
           GRDKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKILEIYPE
Sbjct: 65  GRDKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKILEIYPE 124

Query: 121 AATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALTGIGIVWQSG 180
           AATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALTGIGIVWQSG
Sbjct: 125 AATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALTGIGIVWQSG 184

Query: 181 NFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS 224
           NFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS
Sbjct: 185 NFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS 228

[Close]

BLAST of MC10g0255 vs. ExPASy TrEMBL
Match: A0A6J1JAE2 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482711 PE=4 SV=1)

HSP 1 Score: 335 bits (860), Expect = 1.36e-113
Identity = 177/234 (75.64%), Postives = 192/234 (82.05%), Query Frame = 0


Query: 1   SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSF----PAPEVVSTINVDGGGRDS-FD 60
           S AISAS    CTS H VSKK+QHA  QARP YS     P PE++ T +V  G RD+ FD
Sbjct: 49  SIAISASFRRSCTSNH-VSKKQQHAR-QARPTYSSMTKNPTPELIRTPDV--GNRDAAFD 108

Query: 61  TAERHGR-----DKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 120
             +RHG      DKL EDTD  NHG+ FTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK
Sbjct: 109 APKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAK 168

Query: 121 RRKILEIYPEAATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDAL 180
           RRK LE+YPE ATNQ PVLFRSSIIPWWAWL+ SYLPQAELLNGRAAM+GFF+AY+VDAL
Sbjct: 169 RRKFLELYPETATNQEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDAL 228

Query: 181 TGIGIVWQSGNFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS 224
           TGIGIV QSGNF+ K+ALFVTVI VLLFRQT+D EGLRKLAEEATFYDKQWQAS
Sbjct: 229 TGIGIVGQSGNFISKAALFVTVIGVLLFRQTQDIEGLRKLAEEATFYDKQWQAS 278

[Close]

BLAST of MC10g0255 vs. ExPASy TrEMBL
Match: A0A6J1E3P1 (light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430544 PE=4 SV=1)

HSP 1 Score: 331 bits (848), Expect = 1.74e-112
Identity = 173/233 (74.25%), Postives = 187/233 (80.26%), Query Frame = 0


Query: 1   SAAISASLPTVCTSQHHVSKKKQHAHYQARPAYSF----PAPEVVSTINVDGGGRDSFDT 60
           S AISAS P  CTS H VS K+Q    QARP YS     P PE++ T  V  G RD+ D 
Sbjct: 3   SIAISASFPRSCTSNH-VSNKQQRR--QARPTYSSMTKNPTPELIKTPYV--GDRDALDA 62

Query: 61  AERHGR-----DKLNEDTDAWNHGERFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 120
            +RHG      DKL EDTD  NHG+ FTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR
Sbjct: 63  PKRHGNVASATDKLEEDTDDMNHGQTFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKR 122

Query: 121 RKILEIYPEAATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALT 180
           RK LE+YPE ATN  PVLFRSSIIPWWAWL+ SYLPQAELLNGRAAM+GFF+AY+VDALT
Sbjct: 123 RKFLELYPETATNHEPVLFRSSIIPWWAWLTKSYLPQAELLNGRAAMIGFFMAYLVDALT 182

Query: 181 GIGIVWQSGNFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS 224
           GIGIV QSGNF+ K+ALFVTVI VLLFRQT+D EGLRKLAEEATFYDKQWQAS
Sbjct: 183 GIGIVGQSGNFISKAALFVTVIGVLLFRQTKDIEGLRKLAEEATFYDKQWQAS 230

[Close]

BLAST of MC10g0255 vs. ExPASy TrEMBL
Match: A0A5D3CYT8 (Chlorophyll A-B binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00310 PE=4 SV=1)

HSP 1 Score: 308 bits (790), Expect = 1.38e-103
Identity = 161/239 (67.36%), Postives = 185/239 (77.41%), Query Frame = 0


Query: 1   SAAISASLPTVCTSQH-HVSKKKQHAHYQARPAYSF----PAPEVVSTINVDGGGRDSFD 60
           S AISASLP      H  + KK+QHAH  A+PAYS     P P+V+ST++V  G RD   
Sbjct: 3   SIAISASLPRAANPNHVSMKKKQQHAHL-AKPAYSSMTKNPTPKVISTLDV--GNRDDGA 62

Query: 61  TAERHGRD---------KLNEDTDAWNH-GERFTDERWKNGTWDLNMFVKNGKMDWEGVI 120
             ++H            K+ ED D WN+ GERFTD+RWKNGTWDLNMFVKNGKMDWEGVI
Sbjct: 63  AQQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVI 122

Query: 121 VAEAKRRKILEIYPEAATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAY 180
           V EAKRRK LE++PEAATN+ PVLFRSSIIPWW WL+ SYLPQAELLNGRAAM+GFF+ Y
Sbjct: 123 VEEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 182

Query: 181 VVDALTGIGIVWQSGNFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS 224
            VDALTGIGIV QSGNF+CK+ALF+TVI VLLFRQ+ED E LR +AEEATFYDKQWQ+S
Sbjct: 183 GVDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSS 238

[Close]

BLAST of MC10g0255 vs. ExPASy TrEMBL
Match: A0A1S3BXB8 (uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=4 SV=1)

HSP 1 Score: 308 bits (790), Expect = 1.38e-103
Identity = 161/239 (67.36%), Postives = 185/239 (77.41%), Query Frame = 0


Query: 1   SAAISASLPTVCTSQH-HVSKKKQHAHYQARPAYSF----PAPEVVSTINVDGGGRDSFD 60
           S AISASLP      H  + KK+QHAH  A+PAYS     P P+V+ST++V  G RD   
Sbjct: 3   SIAISASLPRAANPNHVSMKKKQQHAHL-AKPAYSSMTKNPTPKVISTLDV--GNRDDGA 62

Query: 61  TAERHGRD---------KLNEDTDAWNH-GERFTDERWKNGTWDLNMFVKNGKMDWEGVI 120
             ++H            K+ ED D WN+ GERFTD+RWKNGTWDLNMFVKNGKMDWEGVI
Sbjct: 63  AQQQHHHRGNVASSAVVKVEEDNDDWNNNGERFTDKRWKNGTWDLNMFVKNGKMDWEGVI 122

Query: 121 VAEAKRRKILEIYPEAATNQHPVLFRSSIIPWWAWLSNSYLPQAELLNGRAAMLGFFVAY 180
           V EAKRRK LE++PEAATN+ PVLFRSSIIPWW WL+ SYLPQAELLNGRAAM+GFF+ Y
Sbjct: 123 VEEAKRRKFLELHPEAATNEEPVLFRSSIIPWWVWLTKSYLPQAELLNGRAAMIGFFMGY 182

Query: 181 VVDALTGIGIVWQSGNFLCKSALFVTVISVLLFRQTEDAEGLRKLAEEATFYDKQWQAS 224
            VDALTGIGIV QSGNF+CK+ALF+TVI VLLFRQ+ED E LR +AEEATFYDKQWQ+S
Sbjct: 183 GVDALTGIGIVGQSGNFICKTALFLTVIGVLLFRQSEDVENLRNIAEEATFYDKQWQSS 238

[Close]

BLAST of MC10g0255 vs. TAIR 10
Match: AT4G17600.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 202.2 bits (513), Expect = 4.3e-52
Identity = 93/148 (62.84%), Postives = 112/148 (75.68%), Query Frame = 0


Query: 77  RFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKILEIYPEAATNQHPVLFRSSIIP 136
           +F D RW NGTWDL  F K+GK DW+ VIVAEAKRRK LE  PE  +N  PVLF +SIIP
Sbjct: 101 KFQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIP 160

Query: 137 WWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALTGIGIVWQSGNFLCKSALFVTVISVL 196
           WWAW+   +LP+AELLNGRAAM+GFF+AY VD+LTG+G+V Q GNF CK+ LFV V  VL
Sbjct: 161 WWAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 220

Query: 197 LFRQTEDAEGLRKLAEEATFYDKQWQAS 225
             R+ ED + L+ L +E T YDKQWQA+
Sbjct: 221 FIRKNEDVDKLKNLFDETTLYDKQWQAA 248

[Close]

BLAST of MC10g0255 vs. TAIR 10
Match: AT5G47110.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 191.4 bits (485), Expect = 7.7e-49
Identity = 87/148 (58.78%), Postives = 111/148 (75.00%), Query Frame = 0


Query: 77  RFTDERWKNGTWDLNMFVKNGKMDWEGVIVAEAKRRKILEIYPEAATNQHPVLFRSSIIP 136
           ++ + +W NGTWDL  F K+GK DW+ VIV+EAKRRK LE  PE  +N   V+F +SIIP
Sbjct: 98  KYQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIP 157

Query: 137 WWAWLSNSYLPQAELLNGRAAMLGFFVAYVVDALTGIGIVWQSGNFLCKSALFVTVISVL 196
           WWAW+   +LP+AELLNGRAAM+GFF+AY VD+LTG+G+V Q GNF CK+ LFV V  VL
Sbjct: 158 WWAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVL 217

Query: 197 LFRQTEDAEGLRKLAEEATFYDKQWQAS 225
             R+ ED + L+ L +E T YDKQWQA+
Sbjct: 218 FIRKNEDLDKLKDLFDETTLYDKQWQAA 245

The following BLAST results are available for this feature:

BLAST of MC10g0255 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYX1	6.1e-51	62.84	Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis ...	[more]
Q6NKS4	1.1e-47	58.78	Light-harvesting complex-like protein 3 isotype 2, chloroplastic OS=Arabidopsis ...	[more]

BLAST of MC10g0255 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141114.1	6.49e-163	100.00	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Momordica char...	[more]
XP_023551912.1	6.76e-115	75.54	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita pepo...	[more]
XP_022984403.1	2.81e-113	75.64	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita maxi...	[more]
XP_022922577.1	3.59e-112	74.25	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Cucurbita mosc...	[more]
XP_038875279.1	1.08e-107	70.31	light-harvesting complex-like protein 3 isotype 1, chloroplastic [Benincasa hisp...	[more]

BLAST of MC10g0255 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHN0	3.14e-163	100.00	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Momordica ch...	[more]
A0A6J1JAE2	1.36e-113	75.64	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita ma...	[more]
A0A6J1E3P1	1.74e-112	74.25	light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Cucurbita mo...	[more]
A0A5D3CYT8	1.38e-103	67.36	Chlorophyll A-B binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BXB8	1.38e-103	67.36	uncharacterized protein LOC103494445 OS=Cucumis melo OX=3656 GN=LOC103494445 PE=...	[more]

BLAST of MC10g0255 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17600.1	4.3e-52	62.84	Chlorophyll A-B binding family protein	[more]
AT5G47110.1	7.7e-49	58.78	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 145..191 e-value: 5.5E-5 score: 23.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..66
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 63..224
None	No IPR available	PANTHER	PTHR14154:SF56	FACTOR, PUTATIVE-RELATED	coord: 63..224
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 137..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g0255.1	MC10g0255.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane