MC10g0252 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g0252
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionIndole-3-acetic acid inducible 2
LocationMC10: 1973342 .. 1973596 (-)
RNA-Seq ExpressionMC10g0252
SyntenyMC10g0252
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGCCGATTAAGAGTAGTGGGATCATGCCGAGCCCAGAAGGCATCGAGAAGGGACTCGTAACTGCACTCTTTAGGATCATACTGCACCCGAACGACCTCGGAGTGGTAGGACTTCCCAGAACAAACATCCTCATAGGTGGGGTTATGGAGGTGGCCTTGGGTGTAACCGACCTCCGTCTTGGTCACGCCGGGCACCCTCTGAAACACCAACTCGACGCCCCAGAAGCAGCCAGCCCCAAATTGGGCGAACTGCTG

mRNA sequence

CTGCCGATTAAGAGTAGTGGGATCATGCCGAGCCCAGAAGGCATCGAGAAGGGACTCGTAACTGCACTCTTTAGGATCATACTGCACCCGAACGACCTCGGAGTGGTAGGACTTCCCAGAACAAACATCCTCATAGGTGGGGTTATGGAGGTGGCCTTGGGTGTAACCGACCTCCGTCTTGGTCACGCCGGGCACCCTCTGAAACACCAACTCGACGCCCCAGAAGCAGCCAGCCCCAAATTGGGCGAACTGCTG

Coding sequence (CDS)

CTGCCGATTAAGAGTAGTGGGATCATGCCGAGCCCAGAAGGCATCGAGAAGGGACTCGTAACTGCACTCTTTAGGATCATACTGCACCCGAACGACCTCGGAGTGGTAGGACTTCCCAGAACAAACATCCTCATAGGTGGGGTTATGGAGGTGGCCTTGGGTGTAACCGACCTCCGTCTTGGTCACGCCGGGCACCCTCTGAAACACCAACTCGACGCCCCAGAAGCAGCCAGCCCCAAATTGGGCGAACTGCTG

Protein sequence

LPIKSSGIMPSPEGIEKGLVTALFRIILHPNDLGVVGLPRTNILIGGVMEVALGVTDLRLGHAGHPLKHQLDAPEAASPKLGELL
Homology
BLAST of MC10g0252 vs. NCBI nr
Match: GER50839.1 (indole-3-acetic acid inducible 2 [Striga asiatica])

HSP 1 Score: 80.1 bits (196), Expect = 2.22e-16
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 5   SSGIMPSPEGIEKGLVTALFRIILHPNDLGVVGLPRTNILIGGVMEVALGVTDLRLGHAG 64
           S  ++P PE I++G+  A+FR++LHPN L V    R ++L+  V+ +ALGV DL LG   
Sbjct: 78  SRRVVPRPENIKQGIKPAIFRVVLHPNHLRVFRGARAHVLVRRVVHIALGVPDLGLGDTR 137

Query: 65  HPLKHQLDAPEAASPKLGELL 85
           HPL+ Q D PEA+ P+L E L
Sbjct: 138 HPLEGQFDTPEASRPELCESL 158

BLAST of MC10g0252 vs. NCBI nr
Match: KAF5946412.1 (hypothetical protein HYC85_016640 [Camellia sinensis])

HSP 1 Score: 50.8 bits (120), Expect = 4.67e-06
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 9  MPSPEGIEKGLVTALFRIILHPNDLGVVGLPRTNILIGGVME 50
          MP PE I++GL+  L  IIL+PNDL VV  PRT++++ GV+ 
Sbjct: 1  MPGPEHIKQGLIATLLGIILNPNDLRVVRSPRTHVVVRGVVN 42

BLAST of MC10g0252 vs. NCBI nr
Match: THU44481.1 (hypothetical protein C4D60_Mb02t07830 [Musa balbisiana])

HSP 1 Score: 47.8 bits (112), Expect = 9.43e-05
Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 0

Query: 9  MPSPEGIEKGLVTALFRIILHPNDLGVVGLPRTNILIGGVMEVALGVTDLRLGHAGHPLK 68
          M  PE  E+G V A   + +H +DLGV G+   +  +GG+ EVAL V  L L H    L+
Sbjct: 1  MTRPEEGEEGGVGAGGGVEVHADDLGVAGVGAADGPVGGIREVALRVPHLGLHHPFQALE 60

Query: 69 HQLDAPEAASPKLGEL 84
           Q   P+A   KL ++
Sbjct: 61 GQFQPPKAPGCKLRQV 76

BLAST of MC10g0252 vs. NCBI nr
Match: KAF7838224.1 (hypothetical protein G2W53_006706 [Senna tora])

HSP 1 Score: 48.9 bits (115), Expect = 3.07e-04
Identity = 29/77 (37.66%), Postives = 41/77 (53.25%), Query Frame = 0

Query: 9  MPSPEGIEKGLVTALFRIILHPNDLGVVGLPRTNILIGGVMEVALGVTDLRLGHAGHPLK 68
          M  PE  E+  V A  R+ L PN+L V+G       +G +  V L ++D  L  A   LK
Sbjct: 1  MARPEEREEIGVGAELRVELDPNNLNVIGASGAYQSVGRIGNVTLRISDFGLDDADDSLK 60

Query: 69 HQLDAPEAASPKLGELL 85
           +L +PEA S +L EL+
Sbjct: 61 GELHSPEATSSELSELV 77

BLAST of MC10g0252 vs. ExPASy TrEMBL
Match: A0A5A7R0C9 (Indole-3-acetic acid inducible 2 OS=Striga asiatica OX=4170 GN=STAS_28169 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.08e-16
Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 5   SSGIMPSPEGIEKGLVTALFRIILHPNDLGVVGLPRTNILIGGVMEVALGVTDLRLGHAG 64
           S  ++P PE I++G+  A+FR++LHPN L V    R ++L+  V+ +ALGV DL LG   
Sbjct: 78  SRRVVPRPENIKQGIKPAIFRVVLHPNHLRVFRGARAHVLVRRVVHIALGVPDLGLGDTR 137

Query: 65  HPLKHQLDAPEAASPKLGELL 85
           HPL+ Q D PEA+ P+L E L
Sbjct: 138 HPLEGQFDTPEASRPELCESL 158

BLAST of MC10g0252 vs. ExPASy TrEMBL
Match: A0A7J7H067 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_016640 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.26e-06
Identity = 22/42 (52.38%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 9  MPSPEGIEKGLVTALFRIILHPNDLGVVGLPRTNILIGGVME 50
          MP PE I++GL+  L  IIL+PNDL VV  PRT++++ GV+ 
Sbjct: 1  MPGPEHIKQGLIATLLGIILNPNDLRVVRSPRTHVVVRGVVN 42

BLAST of MC10g0252 vs. ExPASy TrEMBL
Match: A0A4S8I990 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb02t07830 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 4.57e-05
Identity = 29/76 (38.16%), Postives = 41/76 (53.95%), Query Frame = 0

Query: 9  MPSPEGIEKGLVTALFRIILHPNDLGVVGLPRTNILIGGVMEVALGVTDLRLGHAGHPLK 68
          M  PE  E+G V A   + +H +DLGV G+   +  +GG+ EVAL V  L L H    L+
Sbjct: 1  MTRPEEGEEGGVGAGGGVEVHADDLGVAGVGAADGPVGGIREVALRVPHLGLHHPFQALE 60

Query: 69 HQLDAPEAASPKLGEL 84
           Q   P+A   KL ++
Sbjct: 61 GQFQPPKAPGCKLRQV 76

BLAST of MC10g0252 vs. ExPASy TrEMBL
Match: A0A540N526 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008733 PE=4 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 8.12e-04
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 0

Query: 1  LPIKSSGIMPSPEGIEKGLVTALFRIILHPNDLGVVGLPRTNILIGGVM 49
          L I+  G+MP PE I++ L  ALFR+ILH ++L V+G   T+ L+  V+
Sbjct: 25 LAIERGGVMPGPEEIKQELKVALFRVILHSHNLRVLGGAGTHDLVTRVV 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GER50839.12.22e-1646.91indole-3-acetic acid inducible 2 [Striga asiatica][more]
KAF5946412.14.67e-0652.38hypothetical protein HYC85_016640 [Camellia sinensis][more]
THU44481.19.43e-0538.16hypothetical protein C4D60_Mb02t07830 [Musa balbisiana][more]
KAF7838224.13.07e-0437.66hypothetical protein G2W53_006706 [Senna tora][more]
Match NameE-valueIdentityDescription
A0A5A7R0C91.08e-1646.91Indole-3-acetic acid inducible 2 OS=Striga asiatica OX=4170 GN=STAS_28169 PE=4 S... [more]
A0A7J7H0672.26e-0652.38Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_016640 PE=4 SV=1[more]
A0A4S8I9904.57e-0538.16Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb02t07830 PE=4 SV=... [more]
A0A540N5268.12e-0444.90Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008733 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g0252.1MC10g0252.1mRNA