MC10g0218 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g0218
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC10: 1602820 .. 1603877 (+)
RNA-Seq ExpressionMC10g0218
SyntenyMC10g0218
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGCGACACAGCAATAAAATCCCAAAACAAAGCCTCGACCACTTAAATTGGCCGACTTGTTTGACTCTTTAAATCCACACATCCATGGAAGAGAATGATCGAGTCTTCTTGCATTGGCCCATTTTCAAGTTTAATCCTTTAGTTTGCCTAACATCACCCCATCTTCAGCTATCAGAAAAAAAATTAATGGCGTCCACCACTAGAGTTTTGTTTGTGTTGATCAAGCTACTTTTCTTTGTTTTTCTTCTCATTGCCTCTTCTGTTTCTGCAACAAGCAACACTCCTTTTCACCACAAATCGCGCACTCGTAAGTTGTTCATTCCGATGACGAACGTCACTTTACTTCGAGAATTTAGAAATAAAGCTTCCATTTCTATAAATTTATGTAGTTTGTATTTTGATTTATGCGTTTGTTCTTTTGAAAAAAACAGTGTAATGTATAGTTAGGTGAAACTTAAAAACATAATTGTAGGTTTCTATAATTTGGATTTGAGTAGAATAATTAACAATTTTACTGTTGAAATAAAAAAATGTAACTCACATACTAAGCATACGATCGATAGATTAGAAACTGAACATAACCACGAAAACAACATCTATAAAAAAGTTTAAGAATGAAGATAAGATTTATATTGTCGTGATTTTAACTTTTTAGATTTGGATTTTTGGTATCAGGTAAGATGGGGGTGGAGGTAGCAAAAGTGAAGAAACCATTTGCTGATGATGTCCCATGGGGTGGAGGCTATGTCCCTCCAATATTAAGCAACCCTTAGATCACATTTCCAAATCTTTTGATCAATCAACTGTGCGTTTTTCCTTTAATTTGGTATTGTTATTGGCATTTTGGGAGCATCAATCTCTAATCCTACATGTAACTCGTTGTTCTCTCAATGCTCGAGCTATTTTCCTTATCGAAATTGTGTATGATCATAACATGCGAGTATTCCCGATAAAAAAATAGATGAGAAATAAAACTCCAATGTAAGTGTGATGTGAGTTAGATGATGAAAGTGACGGTCATGTTTAAGGTTTGTGTGCGACAATTTAATTGAGATGAG

mRNA sequence

CAGCGACACAGCAATAAAATCCCAAAACAAAGCCTCGACCACTTAAATTGGCCGACTTGTTTGACTCTTTAAATCCACACATCCATGGAAGAGAATGATCGAGTCTTCTTGCATTGGCCCATTTTCAAGTTTAATCCTTTAGTTTGCCTAACATCACCCCATCTTCAGCTATCAGAAAAAAAATTAATGGCGTCCACCACTAGAGTTTTGTTTGTGTTGATCAAGCTACTTTTCTTTGTTTTTCTTCTCATTGCCTCTTCTGTTTCTGCAACAAGCAACACTCCTTTTCACCACAAATCGCGCACTCGTAAGATGGGGGTGGAGGTAGCAAAAGTGAAGAAACCATTTGCTGATGATGTCCCATGGGGTGGAGGCTATGTCCCTCCAATATTAAGCAACCCTTAGATCACATTTCCAAATCTTTTGATCAATCAACTGTGCGTTTTTCCTTTAATTTGGTATTGTTATTGGCATTTTGGGAGCATCAATCTCTAATCCTACATGTAACTCGTTGTTCTCTCAATGCTCGAGCTATTTTCCTTATCGAAATTGTGTATGATCATAACATGCGAGTATTCCCGATAAAAAAATAGATGAGAAATAAAACTCCAATGTAAGTGTGATGTGAGTTAGATGATGAAAGTGACGGTCATGTTTAAGGTTTGTGTGCGACAATTTAATTGAGATGAG

Coding sequence (CDS)

ATGGAAGAGAATGATCGAGTCTTCTTGCATTGGCCCATTTTCAAGTTTAATCCTTTAGTTTGCCTAACATCACCCCATCTTCAGCTATCAGAAAAAAAATTAATGGCGTCCACCACTAGAGTTTTGTTTGTGTTGATCAAGCTACTTTTCTTTGTTTTTCTTCTCATTGCCTCTTCTGTTTCTGCAACAAGCAACACTCCTTTTCACCACAAATCGCGCACTCGTAAGATGGGGGTGGAGGTAGCAAAAGTGAAGAAACCATTTGCTGATGATGTCCCATGGGGTGGAGGCTATGTCCCTCCAATATTAAGCAACCCTTAG

Protein sequence

MEENDRVFLHWPIFKFNPLVCLTSPHLQLSEKKLMASTTRVLFVLIKLLFFVFLLIASSVSATSNTPFHHKSRTRKMGVEVAKVKKPFADDVPWGGGYVPPILSNP
Homology
BLAST of MC10g0218 vs. NCBI nr
Match: KAG7014832.1 (hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.3 bits (181), Expect = 6.37e-15
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 0

Query: 35  MASTTRV-LFVLIKLLFFVFLLIASSVSATSNTPFHHKSRTRKMGVEVAKV-----KKPF 94
           MAS  R+ + +L++LLFF  LL+AS+ SA ++    H  RT KM +E  +V     KKP 
Sbjct: 1   MASPRRIRISLLLRLLFFALLLVASTASAANSKALLHNPRTPKMAMEYGQVGKGTSKKPT 60

Query: 95  ADDVPWGGGYVPPILSN 105
           ADDVPWGGGYVPPILSN
Sbjct: 61  ADDVPWGGGYVPPILSN 77

BLAST of MC10g0218 vs. NCBI nr
Match: KAA0067663.1 (hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667.1 hypothetical protein E5676_scaffold577G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 4.89e-13
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 35  MASTTRVLFVLIKLLFFVFLLIASS--VSATSNTPFHHKSRTRKMGVE---------VAK 94
           MAS+   + +++KLLFF  LL  +S  VSAT+N P  HK   RKMGVE         V K
Sbjct: 1   MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60

Query: 95  VKKPFADDVPWGGGYV--PPILSNP 106
           V +P +DDVPWGGGYV  PPIL++P
Sbjct: 61  VNRPTSDDVPWGGGYVHRPPILNSP 85

BLAST of MC10g0218 vs. NCBI nr
Match: KAE8650426.1 (hypothetical protein Csa_009889 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.67e-11
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 0

Query: 35  MASTTRVLFVLIKLLFFVFLLIASSVSATSNT--PFHHKSRTRKMGVE----------VA 94
           MAS  R+  +L+KLLFF  LLI S+VS T+N   P  HK R RK+GV+          V 
Sbjct: 5   MASPWRIP-LLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 64

Query: 95  KVKKPFADDVPWGGGYVPPILSNP 106
           +V KP ++D PWGGGY+ P LSNP
Sbjct: 65  RVIKPTSEDFPWGGGYIHPHLSNP 87

BLAST of MC10g0218 vs. NCBI nr
Match: KAE8650427.1 (hypothetical protein Csa_010020 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.61e-09
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 35  MASTTRVLFVLIKLLFFVFLLIAS--SVSATSNTPFHHKSRTRKMGVE---------VAK 94
           MAS+   + +++KLLFF  LL  +  ++SAT+N P  HK   RKM V          V K
Sbjct: 5   MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 64

Query: 95  VKKPFADDVPWGGGYV--PPILSNP 106
           V KP + D PWGGGYV  PPIL+NP
Sbjct: 65  VYKPTSADFPWGGGYVRRPPILNNP 89

BLAST of MC10g0218 vs. NCBI nr
Match: KAG6576805.1 (hypothetical protein SDJN03_24379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 7.20e-08
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0

Query: 73  RTRKMGVEVAKV-----KKPFADDVPWGGGYVPPILSN 105
           RTRKM +E  +V     KKP ADDVPWGGGYVPPILSN
Sbjct: 35  RTRKMAMEYGQVGKGTSKKPTADDVPWGGGYVPPILSN 72

BLAST of MC10g0218 vs. ExPASy TrEMBL
Match: A0A5D3DJ60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00330 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.37e-13
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 35  MASTTRVLFVLIKLLFFVFLLIASS--VSATSNTPFHHKSRTRKMGVE---------VAK 94
           MAS+   + +++KLLFF  LL  +S  VSAT+N P  HK   RKMGVE         V K
Sbjct: 1   MASSPMKISLMLKLLFFANLLFIASTTVSATNNIPLLHKPPIRKMGVEYKKGEKAVVVPK 60

Query: 95  VKKPFADDVPWGGGYV--PPILSNP 106
           V +P +DDVPWGGGYV  PPIL++P
Sbjct: 61  VNRPTSDDVPWGGGYVHRPPILNSP 85

BLAST of MC10g0218 vs. ExPASy TrEMBL
Match: A0A0A0L653 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.33e-12
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 0

Query: 35  MASTTRVLFVLIKLLFFVFLLIASSVSATSNT--PFHHKSRTRKMGVE----------VA 94
           MAS  R+  +L+KLLFF  LLI S+VS T+N   P  HK R RK+GV+          V 
Sbjct: 1   MASPWRIP-LLLKLLFFSLLLIFSTVSTTNNVVQPLFHKPRIRKIGVDKKTNDGKAGVVP 60

Query: 95  KVKKPFADDVPWGGGYVPPILSNP 106
           +V KP ++D PWGGGY+ P LSNP
Sbjct: 61  RVIKPTSEDFPWGGGYIHPHLSNP 83

BLAST of MC10g0218 vs. ExPASy TrEMBL
Match: A0A0A0L8B2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.07e-10
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 35  MASTTRVLFVLIKLLFFVFLLIAS--SVSATSNTPFHHKSRTRKMGVE---------VAK 94
           MAS+   + +++KLLFF  LL  +  ++SAT+N P  HK   RKM V          V K
Sbjct: 1   MASSPMKISLMLKLLFFATLLFIAYTTISATNNIPLLHKPPIRKMAVGYRKGEKAVVVPK 60

Query: 95  VKKPFADDVPWGGGYV--PPILSNP 106
           V KP + D PWGGGYV  PPIL+NP
Sbjct: 61  VYKPTSADFPWGGGYVRRPPILNNP 85

BLAST of MC10g0218 vs. ExPASy TrEMBL
Match: A0A6J1CHY3 (uncharacterized protein LOC111011803 OS=Momordica charantia OX=3673 GN=LOC111011803 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.67e-04
Identity = 40/83 (48.19%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 30  SEKKLMASTTRVLFVLIKLLFFVFLLIASSVSATSNTPFHHKSRTRKMGVEVAKVKKPF- 89
           SE   MAS  R+ FVL KL FF  LLIAS VSA S    H + R RK+G+E   V K   
Sbjct: 37  SELTTMASL-RISFVL-KLFFFALLLIASRVSA-STPSIHKRPRIRKLGMEYRSVGKAVL 96

Query: 90  -----ADDVPWGGGYVPPILSNP 106
                + D PW GGY PP  +NP
Sbjct: 97  RAKAASYDFPWKGGYNPPN-NNP 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG7014832.16.37e-1554.55hypothetical protein SDJN02_22461 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAA0067663.14.89e-1351.76hypothetical protein E6C27_scaffold70G00320 [Cucumis melo var. makuwa] >TYK23667... [more]
KAE8650426.11.67e-1150.00hypothetical protein Csa_009889 [Cucumis sativus][more]
KAE8650427.11.61e-0947.06hypothetical protein Csa_010020 [Cucumis sativus][more]
KAG6576805.17.20e-0871.05hypothetical protein SDJN03_24379, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5D3DJ602.37e-1351.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L6537.33e-1250.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175590 PE=4 SV=1[more]
A0A0A0L8B27.07e-1047.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175600 PE=4 SV=1[more]
A0A6J1CHY31.67e-0448.19uncharacterized protein LOC111011803 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g0218.1MC10g0218.1mRNA