MC10g0201 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g0201
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein LOW PSII ACCUMULATION 2, chloroplastic
Location	MC10: 1464290 .. 1467122 (-)
RNA-Seq Expression	MC10g0201
Synteny	MC10g0201

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGTGGAGGAATTTCAGGAACTTGAGGGAGAAAATGTAATTATGGAAACTTTTATACTGGAAGAAAAAATGGATTCCATTACTGTAAACTGAACCAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATAATCCCCCACTCTCCCTCTTCTTTCACCAGGAAACCCTATCGCCTTCCCACCATACCTCTTCAATTTCCCTCAAAACGTAATTTCGTCATCAAATCACAGAATTCGTCGGAGTCGGAGTCGGAGAAGCTCATTTCGAAGGTTGTTGATGATGCTTCAGTTGCGACGTCATCCAAGGCGTCGAGCTCATCTGCTCAAGGTTTTGGTTCTTCACCGACTCAATCAACAAGCAAATTGAGTCCGAAGGCCACTCCTTCTAAGGGGAAGCAGAAGGGCAAGCGGCAGAGGGCATCGATTATTCGGCGTTCGCCGGTGGAGAAACCGGTGTTTGTTGGACAGGTAGATGAAGAGGCGGCTAAGGAGCAGGGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTGATCCTCGTCGAGGGCATTGTGCTCGCGGCATCCGGTACGAGCTCTTGAACTTCGTAATTGTGTTTTGTTAAAATTGATGTTGCAGTTTCCAAGTTCGATGGGGGCATCTTCTCTTTCTTGCCTGGGTTTCGTGTAAATAATTTGTTTGTCTGAGATGTGGTAGTTGTCAAAATACGATTCAAGTCGGATTTCTTTCACTAGGACGTGGAAGAAGTCTGAAACCGAATTTCGAACATTAGGCGAGCTTTGGAGGAATTTCTAGTTGGGTAAGGTGGTGGGTTGAAACTTTTGTCTGGTTATTGGAATTTCATTAGAGTGAAAAAATTGAAAACGTGAAACAGTTGACTTATGAAATGAAGAATATTATAATCTAGGCCCCCTTCATTTCGTGTTGTGAGTGGCAATGGTATTTCTTCAATAGTTCTCAGTCTCGAAGTTCATATTTGAAGAATAAAAATAAGGCAAATTTTCATAATCATTTATGACTAAGGTAATGTGATGCACATAGTTCTGCTAGTGAAGGATGTAAGACGAGTGTGGATCTACAGTGATGTTCTCATTGTTCAGGTGTTTGGTGGGGTAAGAGTTCTGTTACTTTCTTTTGGTGATGTTCTCCAGTCGTTGTATATATATTCTTCAGTGAAAGAAAGCTGAACTTTAACAGTGGATTAGATTCTCCTTGTCCTCCTCTCCCCTGGCATGTCAATGCATGTACTGGGATAGCATCAATTTGATGGTTGATTTGGTTTTCCTGTACCAACAACTTATTGCAGGCTCTAGATTTTTTCCCCTAACAAATATATTGCATAAATATTTTACAGTGATAATTTATAAGAGATTGTAATTAATATGTAAAAAACAGCATAGTTTGGTGTACAATCTTCCAATCGAAATAAGTTGCTTATGTTTTTGCTGGCCTTGTATTCCGAAGTTTTTTAAATGTAAGGTTAATTCCATCTGGAAGACCCTGAACTACTCTTGTTTAGAAGCATGTTTGCTATGTGCCGTTAGAATTTGCCTAAGTTACTGCTCATTTATATTTAACATCTTTCACTGTTCCATTGGAATGGGAATCCAATTATTCAACATAATATGCTGTTATTCAAATATGCTTTTATGGGTTGAGGGAGGTTCCTTTTGACGCGGTTTTTCTTTGTGGTTCTTCTAACACGAAAGAAATAGGTCTTCCGAGGATAGCAGTGTTTCAGGGAAGGAGGTTGTGATGCTTTCCTTTGGGCTTCTACTTTTGTCGTTAGAAATGTTCTTCTTTTCGGATTTTAGATAGGTTCTCAGTTGGATCGTTTTTCTTCTGAAATTTTTCCTCTAATGAATGGTTTGGCAGAATATCTTCCCGGCATTGACTTCCATTTGATATCCTTAAACCTAATGTAGCTGGATAAGAACAAATAACGCAGGTCTTGATATGCAATTGAGGCTAATTGATTACGACTTTGAAATTTAGGATTCTAGGGTTCAACAAACAAATGTGCTTTCAATGAGAGTTGTAAGATGGCACATCCAATCCTACTTTCCAAATGCCAAATGAGACTTGTGGACTGGATTGTTTTTCTTGGAGAAACAGAGTTACATTGCGGTTAAGAGTTGGTGCTGTACCTTCTTTGGTTCGTTTAGTGGATCTTTTGTATCTCAGGAGAAGAGAATGAGGTCGGGCAATCTCCATTTTGTTATCTAAGAAGTTCTAGTTGTTCAAAGCCTGTTCTTTAGCTATGGTTTTTTTCGGAAAACCATTATTTTGGAACTTTCTTGATTAAAATCTTTTGTTAGAGTTCAATGGTTTGACACTTCGGATTTTTTTCTTGCGATTTCAAAATATACAACATACCTCATTTGCTGTTGATTCTACCATCAAACTAATGGAAAGTAATAGCTCTTATCTTTCATAGTTTATGTCGGGACTTCTTTTTTTCTATTTCTTATACTATTTGAATTCTTTGATGCCTCTAAATATGGGAAGAAACATACTCTCATGATTTTATTTGACTGGAATGAATATACACTTAGTCTGTGTTACAAATTCAATGTCCGATTTCTTTCATTAGTGCAATATTCATAGTCCATGCTTCAACTTCACTTTGATTCACTGCAACTATAATTGTTAATATGTCGTGTGCATCTTCAGGTTTCTTACCGGAAGAGTGGGATAAGTTCCTTGTCAAATATTTGTATCCATCCTTTACACCAACCGTTTCTCTGTTTGTTGCTGGAACTGTTGCATATGGAGTTTTGAAGTATCTTCAGAACGAGAAAACTAAAGGTGAGAAATCA

mRNA sequence

GCGTGGAGGAATTTCAGGAACTTGAGGGAGAAAATGTAATTATGGAAACTTTTATACTGGAAGAAAAAATGGATTCCATTACTGTAAACTGAACCAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATAATCCCCCACTCTCCCTCTTCTTTCACCAGGAAACCCTATCGCCTTCCCACCATACCTCTTCAATTTCCCTCAAAACGTAATTTCGTCATCAAATCACAGAATTCGTCGGAGTCGGAGTCGGAGAAGCTCATTTCGAAGGTTGTTGATGATGCTTCAGTTGCGACGTCATCCAAGGCGTCGAGCTCATCTGCTCAAGGTTTTGGTTCTTCACCGACTCAATCAACAAGCAAATTGAGTCCGAAGGCCACTCCTTCTAAGGGGAAGCAGAAGGGCAAGCGGCAGAGGGCATCGATTATTCGGCGTTCGCCGGTGGAGAAACCGGTGTTTGTTGGACAGGTAGATGAAGAGGCGGCTAAGGAGCAGGGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTGATCCTCGTCGAGGGCATTGTGCTCGCGGCATCCGGTTTCTTACCGGAAGAGTGGGATAAGTTCCTTGTCAAATATTTGTATCCATCCTTTACACCAACCGTTTCTCTGTTTGTTGCTGGAACTGTTGCATATGGAGTTTTGAAGTATCTTCAGAACGAGAAAACTAAAGGTGAGAAATCA

Coding sequence (CDS)

ATGGCGCTACAAATAATCCCCCACTCTCCCTCTTCTTTCACCAGGAAACCCTATCGCCTTCCCACCATACCTCTTCAATTTCCCTCAAAACGTAATTTCGTCATCAAATCACAGAATTCGTCGGAGTCGGAGTCGGAGAAGCTCATTTCGAAGGTTGTTGATGATGCTTCAGTTGCGACGTCATCCAAGGCGTCGAGCTCATCTGCTCAAGGTTTTGGTTCTTCACCGACTCAATCAACAAGCAAATTGAGTCCGAAGGCCACTCCTTCTAAGGGGAAGCAGAAGGGCAAGCGGCAGAGGGCATCGATTATTCGGCGTTCGCCGGTGGAGAAACCGGTGTTTGTTGGACAGGTAGATGAAGAGGCGGCTAAGGAGCAGGGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGCTGTGATCCTCGTCGAGGGCATTGTGCTCGCGGCATCCGGTTTCTTACCGGAAGAGTGGGATAAGTTCCTTGTCAAATATTTGTATCCATCCTTTACACCAACCGTTTCTCTGTTTGTTGCTGGAACTGTTGCATATGGAGTTTTGAAGTATCTTCAGAACGAGAAAACTAAAGGTGAGAAATCA

Protein sequence

MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQVDEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKTKGEKS

Homology

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BLAST of MC10g0201 vs. ExPASy Swiss-Prot
Match: F4KDA6 (Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.8e-42
Identity = 112/204 (54.90%), Postives = 137/204 (67.16%), Query Frame = 0


Query: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRN--FVIKSQNSSESESEKLISKVVDDASV 60
           MALQI  HSP SF+ +PY L      F + RN  F IK QNS      ++ S   +D S 
Sbjct: 1   MALQI--HSPCSFSTRPYHL------FFTTRNPRFAIKCQNS------QIESDTTEDPS- 60

Query: 61  ATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQV 120
              SK SSSS  GFG SP  S+S     +  + G +KGK +R  + RR+PVEKPVF+ + 
Sbjct: 61  --RSKNSSSSGVGFG-SPASSSSPAKKLSAATSGNKKGKGKR-EVNRRAPVEKPVFMSEE 120

Query: 121 DEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVS 180
               A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK  VKY+YP FTP+V 
Sbjct: 121 GAAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVV 180

Query: 181 LFVAGTVAYGVLKYLQNEKTKGEK 203
           LFVAGT AYGVLKY+QNEK KG++
Sbjct: 181 LFVAGTTAYGVLKYIQNEKMKGQE 185

[Close]

BLAST of MC10g0201 vs. NCBI nr
Match: XP_022140851.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Momordica charantia])

HSP 1 Score: 380 bits (976), Expect = 1.38e-132
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60
           MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT
Sbjct: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60

Query: 61  SSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQVDE 120
           SSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQVDE
Sbjct: 61  SSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQVDE 120

Query: 121 EAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLF 180
           EAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLF
Sbjct: 121 EAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKTKGEKS 203
           VAGTVAYGVLKYLQNEKTKGEKS
Sbjct: 181 VAGTVAYGVLKYLQNEKTKGEKS 203

[Close]

BLAST of MC10g0201 vs. NCBI nr
Match: XP_022941727.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata] >KAG7030828.1 Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303 bits (777), Expect = 2.36e-102
Identity = 170/205 (82.93%), Postives = 176/205 (85.85%), Query Frame = 0


Query: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60
           MALQII HSPSSFTRKPY LP IPL FPSK  F+IKSQN SESE  K ISK VDDA V T
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESE--KPISKTVDDAPVGT 60

Query: 61  SSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQV 120
                 SSAQGFGS  +QST  SK SPKAT SKGKQKGKRQRASIIRRSPVEKPVFVG+V
Sbjct: 61  ------SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEV 120

Query: 121 DEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVS 180
           DEEA KEQG+NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKF VKYLYPSFTPTVS
Sbjct: 121 DEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVS 180

Query: 181 LFVAGTVAYGVLKYLQNEKTKGEKS 203
           LFVAGTVAYGV KYLQNEK KG+KS
Sbjct: 181 LFVAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of MC10g0201 vs. NCBI nr
Match: XP_023554492.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301 bits (772), Expect = 1.36e-101
Identity = 169/205 (82.44%), Postives = 175/205 (85.37%), Query Frame = 0


Query: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60
           MALQII HSPSSFTRKPY LP  PL FPSK  F+IKSQN SESE  K ISK VDDA V T
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLHFPSKLKFIIKSQNPSESE--KPISKTVDDAPVGT 60

Query: 61  SSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQV 120
                 SSAQGFGS  +QST  SK SPKAT SKGKQKGKRQRASIIRRSPVEKPVFVG+V
Sbjct: 61  ------SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEV 120

Query: 121 DEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVS 180
           DEEA KEQG+NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKF VKYLYPSFTPTVS
Sbjct: 121 DEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVS 180

Query: 181 LFVAGTVAYGVLKYLQNEKTKGEKS 203
           LFVAGTVAYGV KYLQNEK KG+KS
Sbjct: 181 LFVAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of MC10g0201 vs. NCBI nr
Match: XP_022973018.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 300 bits (768), Expect = 5.53e-101
Identity = 169/205 (82.44%), Postives = 175/205 (85.37%), Query Frame = 0


Query: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60
           MALQII HSPSSFTRKPY LP  PL FPSK  F+IKSQ  S SESEK ISK VDDA+V T
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQ--SPSESEKPISKTVDDAAVGT 60

Query: 61  SSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQV 120
                 SSAQGFGS  +QST  SK SPKAT SKGKQKGKRQRASIIRRSPVEKPVFVG+V
Sbjct: 61  ------SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEV 120

Query: 121 DEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVS 180
           DEEA KEQG+NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKF VKYLYPSFTPTVS
Sbjct: 121 DEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVS 180

Query: 181 LFVAGTVAYGVLKYLQNEKTKGEKS 203
           LFVAGTVAYGV KYLQNEK KG+KS
Sbjct: 181 LFVAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of MC10g0201 vs. NCBI nr
Match: XP_038899637.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 297 bits (761), Expect = 6.90e-100
Identity = 170/205 (82.93%), Postives = 175/205 (85.37%), Query Frame = 0


Query: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60
           MALQI+ HSPSSFTRKPY LP   L FPSK  F+I SQN SESE  K ISK VDDA +AT
Sbjct: 1   MALQILHHSPSSFTRKPYHLPNPSLNFPSKPKFIITSQNPSESE--KPISKNVDDAPLAT 60

Query: 61  SSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQV 120
           SSK SSSS QGFGSS +QST  SK SPKA     KQKGKRQRASIIRRSPVEKPVFVG+V
Sbjct: 61  SSKPSSSSPQGFGSSSSQSTTTSKSSPKAV----KQKGKRQRASIIRRSPVEKPVFVGKV 120

Query: 121 DEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVS 180
           DEEAAKEQ RNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKF VKYLYPSFTPTVS
Sbjct: 121 DEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVS 180

Query: 181 LFVAGTVAYGVLKYLQNEKTKGEKS 203
           LFVAGTVAYGVLKYLQNEK K EKS
Sbjct: 181 LFVAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of MC10g0201 vs. ExPASy TrEMBL
Match: A0A6J1CH98 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011420 PE=4 SV=1)

HSP 1 Score: 380 bits (976), Expect = 6.68e-133
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0


Query: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60
           MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT
Sbjct: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60

Query: 61  SSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQVDE 120
           SSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQVDE
Sbjct: 61  SSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQVDE 120

Query: 121 EAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLF 180
           EAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLF
Sbjct: 121 EAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKTKGEKS 203
           VAGTVAYGVLKYLQNEKTKGEKS
Sbjct: 181 VAGTVAYGVLKYLQNEKTKGEKS 203

[Close]

BLAST of MC10g0201 vs. ExPASy TrEMBL
Match: A0A6J1FNA7 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447004 PE=4 SV=1)

HSP 1 Score: 303 bits (777), Expect = 1.14e-102
Identity = 170/205 (82.93%), Postives = 176/205 (85.85%), Query Frame = 0


Query: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60
           MALQII HSPSSFTRKPY LP IPL FPSK  F+IKSQN SESE  K ISK VDDA V T
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESE--KPISKTVDDAPVGT 60

Query: 61  SSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQV 120
                 SSAQGFGS  +QST  SK SPKAT SKGKQKGKRQRASIIRRSPVEKPVFVG+V
Sbjct: 61  ------SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEV 120

Query: 121 DEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVS 180
           DEEA KEQG+NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKF VKYLYPSFTPTVS
Sbjct: 121 DEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVS 180

Query: 181 LFVAGTVAYGVLKYLQNEKTKGEKS 203
           LFVAGTVAYGV KYLQNEK KG+KS
Sbjct: 181 LFVAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of MC10g0201 vs. ExPASy TrEMBL
Match: A0A6J1IBT8 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471505 PE=4 SV=1)

HSP 1 Score: 300 bits (768), Expect = 2.68e-101
Identity = 169/205 (82.44%), Postives = 175/205 (85.37%), Query Frame = 0


Query: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60
           MALQII HSPSSFTRKPY LP  PL FPSK  F+IKSQ  S SESEK ISK VDDA+V T
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQ--SPSESEKPISKTVDDAAVGT 60

Query: 61  SSKASSSSAQGFGSSPTQST--SKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQV 120
                 SSAQGFGS  +QST  SK SPKAT SKGKQKGKRQRASIIRRSPVEKPVFVG+V
Sbjct: 61  ------SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEV 120

Query: 121 DEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVS 180
           DEEA KEQG+NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKF VKYLYPSFTPTVS
Sbjct: 121 DEEAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVS 180

Query: 181 LFVAGTVAYGVLKYLQNEKTKGEKS 203
           LFVAGTVAYGV KYLQNEK KG+KS
Sbjct: 181 LFVAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of MC10g0201 vs. ExPASy TrEMBL
Match: A0A1S3AXX6 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483996 PE=4 SV=1)

HSP 1 Score: 291 bits (744), Expect = 1.29e-97
Identity = 161/203 (79.31%), Postives = 172/203 (84.73%), Query Frame = 0


Query: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60
           MALQI+ HSPSSFT+KPY LP   L F SK  F+IKSQN SESE  K ISK+VDDA +AT
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESE--KPISKIVDDAPIAT 60

Query: 61  SSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQVDE 120
           SSK S+SS QGFGSS  QSTS  + K+TP   KQKGKRQRASIIRRSPVEKPVFVG+VDE
Sbjct: 61  SSKPSTSSPQGFGSSSPQSTS--TSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLF 180
           + AKEQ RNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+  VKYLYPSFTPTVSLF
Sbjct: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKTKGEKS 203
           VAGTVAYGVLKYLQNEK K EKS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of MC10g0201 vs. ExPASy TrEMBL
Match: A0A5A7VJY0 (Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00540 PE=4 SV=1)

HSP 1 Score: 289 bits (740), Expect = 5.26e-97
Identity = 160/203 (78.82%), Postives = 172/203 (84.73%), Query Frame = 0


Query: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60
           MALQI+ HSPSSFT+KPY LP   L F SK  F+IKSQN SESE  K ISK+VDDA +AT
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESE--KPISKIVDDAPIAT 60

Query: 61  SSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQVDE 120
           SSK  +SS+QGFGSS  QSTS  + K+TP   KQKGKRQRASIIRRSPVEKPVFVG+VDE
Sbjct: 61  SSKPYTSSSQGFGSSSPQSTS--TSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVSLF 180
           + AKEQ RNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+  VKYLYPSFTPTVSLF
Sbjct: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVLKYLQNEKTKGEKS 203
           VAGTVAYGVLKYLQNEK K EKS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of MC10g0201 vs. TAIR 10
Match: AT5G51545.1 (low psii accumulation2 )

HSP 1 Score: 173.3 bits (438), Expect = 2.0e-43
Identity = 112/204 (54.90%), Postives = 137/204 (67.16%), Query Frame = 0


Query: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRN--FVIKSQNSSESESEKLISKVVDDASV 60
           MALQI  HSP SF+ +PY L      F + RN  F IK QNS      ++ S   +D S 
Sbjct: 1   MALQI--HSPCSFSTRPYHL------FFTTRNPRFAIKCQNS------QIESDTTEDPS- 60

Query: 61  ATSSKASSSSAQGFGSSPTQSTSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQV 120
              SK SSSS  GFG SP  S+S     +  + G +KGK +R  + RR+PVEKPVF+ + 
Sbjct: 61  --RSKNSSSSGVGFG-SPASSSSPAKKLSAATSGNKKGKGKR-EVNRRAPVEKPVFMSEE 120

Query: 121 DEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVS 180
               A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK  VKY+YP FTP+V 
Sbjct: 121 GAAKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVV 180

Query: 181 LFVAGTVAYGVLKYLQNEKTKGEK 203
           LFVAGT AYGVLKY+QNEK KG++
Sbjct: 181 LFVAGTTAYGVLKYIQNEKMKGQE 185

The following BLAST results are available for this feature:

BLAST of MC10g0201 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KDA6	2.8e-42	54.90	Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1	[more]

BLAST of MC10g0201 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140851.1	1.38e-132	100.00	protein LOW PSII ACCUMULATION 2, chloroplastic [Momordica charantia]	[more]
XP_022941727.1	2.36e-102	82.93	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata] >KAG7030828....	[more]
XP_023554492.1	1.36e-101	82.44	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022973018.1	5.53e-101	82.44	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]	[more]
XP_038899637.1	6.90e-100	82.93	protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]	[more]

BLAST of MC10g0201 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CH98	6.68e-133	100.00	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1FNA7	1.14e-102	82.93	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1IBT8	2.68e-101	82.44	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A1S3AXX6	1.29e-97	79.31	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7VJY0	5.26e-97	78.82	Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MC10g0201 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51545.1	2.0e-43	54.90	low psii accumulation2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
IPR038789	Protein LOW PSII ACCUMULATION 2 like	PANTHER	PTHR37385	PROTEIN LOW PSII ACCUMULATION 2, CHLOROPLASTIC	coord: 1..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g0201.1	MC10g0201.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane