MC10g0163 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g0163
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LysM domain-containing protein
Location	MC10: 1163383 .. 1163697 (+)
RNA-Seq Expression	MC10g0163
Synteny	MC10g0163

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCACGGCCCCAAACCGACGTCGTCTCATGGTACTGCGCCGTGGGCATGCTGGCCTTGATCTTGATCGGGTCGATCAGAGAAAGCACCTACTCCGCCGGCGCCGCCGATGACGGCCGGCTGGCCAGAGGAAACTTGGTCAGGGGGCGGCCGTGCGACGAGATATATGTGGTCGGAGAAGGGGAAACGCTGCACACCATCAGCGACAAGTGCGGCGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGCTTGGTCATCAAAATCATCTCCTCCTCCAACCCTCCCAAC

mRNA sequence

TCTTCACGGCCCCAAACCGACGTCGTCTCATGGTACTGCGCCGTGGGCATGCTGGCCTTGATCTTGATCGGGTCGATCAGAGAAAGCACCTACTCCGCCGGCGCCGCCGATGACGGCCGGCTGGCCAGAGGAAACTTGGTCAGGGGGCGGCCGTGCGACGAGATATATGTGGTCGGAGAAGGGGAAACGCTGCACACCATCAGCGACAAGTGCGGCGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGCTTGGTCATCAAAATCATCTCCTCCTCCAACCCTCCCAAC

Coding sequence (CDS)

TCTTCACGGCCCCAAACCGACGTCGTCTCATGGTACTGCGCCGTGGGCATGCTGGCCTTGATCTTGATCGGGTCGATCAGAGAAAGCACCTACTCCGCCGGCGCCGCCGATGACGGCCGGCTGGCCAGAGGAAACTTGGTCAGGGGGCGGCCGTGCGACGAGATATATGTGGTCGGAGAAGGGGAAACGCTGCACACCATCAGCGACAAGTGCGGCGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGCTTGGTCATCAAAATCATCTCCTCCTCCAACCCTCCCAAC

Protein sequence

SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPPN

Homology

[Close]

BLAST of MC10g0163 vs. NCBI nr
Match: XP_022157015.1 (uncharacterized protein LOC111023841 [Momordica charantia])

HSP 1 Score: 217 bits (552), Expect = 7.67e-71
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE 60
           SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE
Sbjct: 15  SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE 74

Query: 61  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPPN 105
           GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNP N
Sbjct: 75  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPSN 119

[Close]

BLAST of MC10g0163 vs. NCBI nr
Match: XP_008439155.1 (PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Peptidoglycan-binding LysM domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 4.41e-54
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE 60
           SSRP  DVVSWYCAVG+L LILIGSIRE++ S+G  D GR  RGNLV  RPCDEIYVVGE
Sbjct: 17  SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSG--DQGRSLRGNLVTWRPCDEIYVVGE 76

Query: 61  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS 101
           GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS
Sbjct: 77  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASS 115

[Close]

BLAST of MC10g0163 vs. NCBI nr
Match: XP_022985106.1 (uncharacterized protein LOC111483184 [Cucurbita maxima])

HSP 1 Score: 174 bits (440), Expect = 8.62e-54
Identity = 83/104 (79.81%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE 60
           SSR   DVVSWYCAV +L LILIGSIRE++ SA A D  ++ RGNL+ GR CDEIYVVGE
Sbjct: 13  SSRLLIDVVSWYCAVAILGLILIGSIRETSSSASADDGSQMLRGNLLTGRACDEIYVVGE 72

Query: 61  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPP 104
           GETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS NPP
Sbjct: 73  GETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPP 116

[Close]

BLAST of MC10g0163 vs. NCBI nr
Match: KAG6576752.1 (hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014795.1 hypothetical protein SDJN02_22424, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173 bits (439), Expect = 1.26e-53
Identity = 83/105 (79.05%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDG-RLARGNLVRGRPCDEIYVVG 60
           SSR   DVVSWYCA+ +L LILIGSIRE++ S+ +ADDG ++ RGNL+ GR CDEIYVVG
Sbjct: 13  SSRLLIDVVSWYCALALLGLILIGSIRETSSSSASADDGGQMLRGNLLTGRACDEIYVVG 72

Query: 61  EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPP 104
           EGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS NPP
Sbjct: 73  EGETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPP 117

[Close]

BLAST of MC10g0163 vs. NCBI nr
Match: XP_004150301.1 (uncharacterized protein LOC101210054 [Cucumis sativus])

HSP 1 Score: 172 bits (437), Expect = 2.25e-53
Identity = 84/101 (83.17%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE 60
           SSRP  DVVSWYCAVG+L LILIGSIRE++ S     DGRL RGNLV  RPCDEIYVVGE
Sbjct: 15  SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSG----DGRLLRGNLVTWRPCDEIYVVGE 74

Query: 61  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS 101
           GETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+SS
Sbjct: 75  GETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIASS 111

[Close]

BLAST of MC10g0163 vs. ExPASy TrEMBL
Match: A0A6J1DRZ3 (uncharacterized protein LOC111023841 OS=Momordica charantia OX=3673 GN=LOC111023841 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 3.72e-71
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE 60
           SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE
Sbjct: 15  SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE 74

Query: 61  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPPN 105
           GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNP N
Sbjct: 75  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPSN 119

[Close]

BLAST of MC10g0163 vs. ExPASy TrEMBL
Match: A0A5A7VAP9 (Peptidoglycan-binding LysM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7478G00010 PE=4 SV=1)

HSP 1 Score: 174 bits (442), Expect = 2.13e-54
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE 60
           SSRP  DVVSWYCAVG+L LILIGSIRE++ S+G  D GR  RGNLV  RPCDEIYVVGE
Sbjct: 17  SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSG--DQGRSLRGNLVTWRPCDEIYVVGE 76

Query: 61  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS 101
           GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS
Sbjct: 77  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASS 115

[Close]

BLAST of MC10g0163 vs. ExPASy TrEMBL
Match: A0A1S3AXP2 (uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=4 SV=1)

HSP 1 Score: 174 bits (442), Expect = 2.13e-54
Identity = 85/101 (84.16%), Postives = 90/101 (89.11%), Query Frame = 0


Query: 1   SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE 60
           SSRP  DVVSWYCAVG+L LILIGSIRE++ S+G  D GR  RGNLV  RPCDEIYVVGE
Sbjct: 17  SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSG--DQGRSLRGNLVTWRPCDEIYVVGE 76

Query: 61  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS 101
           GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+SS
Sbjct: 77  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIASS 115

[Close]

BLAST of MC10g0163 vs. ExPASy TrEMBL
Match: A0A6J1J769 (uncharacterized protein LOC111483184 OS=Cucurbita maxima OX=3661 GN=LOC111483184 PE=4 SV=1)

HSP 1 Score: 174 bits (440), Expect = 4.17e-54
Identity = 83/104 (79.81%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE 60
           SSR   DVVSWYCAV +L LILIGSIRE++ SA A D  ++ RGNL+ GR CDEIYVVGE
Sbjct: 13  SSRLLIDVVSWYCAVAILGLILIGSIRETSSSASADDGSQMLRGNLLTGRACDEIYVVGE 72

Query: 61  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNPP 104
           GETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS NPP
Sbjct: 73  GETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIISSHNPP 116

[Close]

BLAST of MC10g0163 vs. ExPASy TrEMBL
Match: A0A0A0L5R9 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 SV=1)

HSP 1 Score: 172 bits (437), Expect = 1.09e-53
Identity = 84/101 (83.17%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 1   SSRPQTDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGE 60
           SSRP  DVVSWYCAVG+L LILIGSIRE++ S     DGRL RGNLV  RPCDEIYVVGE
Sbjct: 15  SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSG----DGRLLRGNLVTWRPCDEIYVVGE 74

Query: 61  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS 101
           GETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKII+SS
Sbjct: 75  GETLHTISDKCGDPYIVERNPHIHDPDDVFPGLVIKIIASS 111

[Close]

BLAST of MC10g0163 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-27
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 0


Query: 6  TDVVSWYCAVGMLALILIGSIRESTYSAGAADDGRLARGNLVRGRPCDEIYVVGEGETLH 65
          +D+ +W  AV +L+LIL+ S+RE+  S          RG+    +PC+EIY+VGEGETLH
Sbjct: 9  SDMSAWCSAVVLLSLILLLSVRENNAS-------NSIRGSQFSTKPCEEIYIVGEGETLH 68

Query: 66 TISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 98
          TI DKCGDPFIVERNPHIHDPDDVFPGLV+KI
Sbjct: 69 TIGDKCGDPFIVERNPHIHDPDDVFPGLVLKI 93

[Close]

BLAST of MC10g0163 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-26
Identity = 56/97 (57.73%), Postives = 73/97 (75.26%), Query Frame = 0


Query: 5   QTDVVSWYCAVGMLALILIGSIREST-YSAGAADDGR---LARGNLVRGRPCDEIYVVGE 64
           +++ V+ YC V +L L L GS++ S    +G    GR   + RG  +  RPC+E+YVVGE
Sbjct: 8   RSNTVASYCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVWRGKQMMERPCEELYVVGE 67

Query: 65  GETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 98
           G+TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Sbjct: 68  GDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

[Close]

BLAST of MC10g0163 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-21
Identity = 51/104 (49.04%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 1   SSRPQTDVVSWYCAVGMLALILIGSIR----ESTYSAGAADDGRLARGNLVRGRPCDEIY 60
           SS    + +SWYCAV    ++L+ S +     ST          +  G   R   CDEIY
Sbjct: 5   SSMAVAEKISWYCAVFAAMMLLMNSFQVAQEGSTEIVEKQQPSMMITGYSHRRPACDEIY 64

Query: 61  VVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS 101
            V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I  S
Sbjct: 65  EVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPS 108

The following BLAST results are available for this feature:

BLAST of MC10g0163 vs.


Match Name	E-value	Identity	Description

BLAST of MC10g0163 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157015.1	7.67e-71	99.05	uncharacterized protein LOC111023841 [Momordica charantia]	[more]
XP_008439155.1	4.41e-54	84.16	PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo] >KAA0063496.1 Pep...	[more]
XP_022985106.1	8.62e-54	79.81	uncharacterized protein LOC111483184 [Cucurbita maxima]	[more]
KAG6576752.1	1.26e-53	79.05	hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_004150301.1	2.25e-53	83.17	uncharacterized protein LOC101210054 [Cucumis sativus]	[more]

BLAST of MC10g0163 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRZ3	3.72e-71	99.05	uncharacterized protein LOC111023841 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5A7VAP9	2.13e-54	84.16	Peptidoglycan-binding LysM domain-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3AXP2	2.13e-54	84.16	uncharacterized protein LOC103484036 OS=Cucumis melo OX=3656 GN=LOC103484036 PE=...	[more]
A0A6J1J769	4.17e-54	79.81	uncharacterized protein LOC111483184 OS=Cucurbita maxima OX=3661 GN=LOC111483184...	[more]
A0A0A0L5R9	1.09e-53	83.17	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G179200 PE=4 S...	[more]

BLAST of MC10g0163 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G62150.1	1.0e-27	61.96	peptidoglycan-binding LysM domain-containing protein	[more]
AT4G25433.1	1.5e-26	57.73	peptidoglycan-binding LysM domain-containing protein	[more]
AT3G52790.1	1.9e-21	49.04	peptidoglycan-binding LysM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 56..97 e-value: 1.5E-4 score: 21.7
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 55..97 e-value: 2.79355E-5 score: 36.6945
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 49..104 e-value: 4.6E-7 score: 31.3
None	No IPR available	PANTHER	PTHR33648	EMBRYO SAC 1	coord: 4..101
None	No IPR available	PANTHER	PTHR33648:SF31	PROTEIN, PUTATIVE-RELATED	coord: 4..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g0163.1	MC10g0163.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity