MC10g0084 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g0084
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionlipoyltransferase 2
LocationMC10: 531878 .. 531967 (+)
RNA-Seq ExpressionMC10g0084
SyntenyMC10g0084
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGTTTGGGTTGGAGCCATTGGTGTTAGAATTTCAGGTGGGATCACTTCTCATGGTCTGGCATTCAATGTGGATCATCATTTGAGGTAT

mRNA sequence

GGAGTTTGGGTTGGAGCCATTGGTGTTAGAATTTCAGGTGGGATCACTTCTCATGGTCTGGCATTCAATGTGGATCATCATTTGAGGTAT

Coding sequence (CDS)

GGAGTTTGGGTTGGAGCCATTGGTGTTAGAATTTCAGGTGGGATCACTTCTCATGGTCTGGCATTCAATGTGGATCATCATTTGAGGTAT

Protein sequence

GVWVGAIGVRISGGITSHGLAFNVDHHLRY
Homology
BLAST of MC10g0084 vs. ExPASy Swiss-Prot
Match: Q9SXP7 (Octanoyltransferase LIP2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LIP2 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 7.5e-05
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 0

Query: 1   GVWV-----GAIGVRISGGITSHGLAFNVDHHLRY 31
           GVWV     GAIGVRIS GITSHGLA N+D  ++Y
Sbjct: 137 GVWVGDRKIGAIGVRISSGITSHGLALNIDPDMKY 171

BLAST of MC10g0084 vs. NCBI nr
Match: XP_038879976.1 (octanoyltransferase LIP2, mitochondrial [Benincasa hispida] >XP_038879977.1 octanoyltransferase LIP2, mitochondrial [Benincasa hispida])

HSP 1 Score: 50.1 bits (118), Expect = 1.02e-05
Identity = 27/35 (77.14%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 1   GVWVG-----AIGVRISGGITSHGLAFNVDHHLRY 30
           GVWVG     AIGVRIS GITSHGLAFNVD  LRY
Sbjct: 137 GVWVGDRKIGAIGVRISNGITSHGLAFNVDPDLRY 171

BLAST of MC10g0084 vs. NCBI nr
Match: XP_024983286.1 (octanoyltransferase-like [Cynara cardunculus var. scolymus] >XP_024983287.1 octanoyltransferase-like [Cynara cardunculus var. scolymus] >XP_024983288.1 octanoyltransferase-like [Cynara cardunculus var. scolymus] >XP_024983289.1 octanoyltransferase-like [Cynara cardunculus var. scolymus])

HSP 1 Score: 49.7 bits (117), Expect = 1.37e-05
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 1   GVWVG-----AIGVRISGGITSHGLAFNVDHHLRY 30
           GVWVG     AIGVRIS GITSHGLAFN+D  LRY
Sbjct: 137 GVWVGERKIGAIGVRISSGITSHGLAFNIDPDLRY 171

BLAST of MC10g0084 vs. NCBI nr
Match: KVI00265.1 (Biotin/lipoate A/B protein ligase [Cynara cardunculus var. scolymus])

HSP 1 Score: 49.7 bits (117), Expect = 1.67e-05
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 1   GVWVG-----AIGVRISGGITSHGLAFNVDHHLRY 30
           GVWVG     AIGVRIS GITSHGLAFN+D  LRY
Sbjct: 730 GVWVGERKIGAIGVRISSGITSHGLAFNIDPDLRY 764

BLAST of MC10g0084 vs. NCBI nr
Match: XP_017413586.1 (PREDICTED: octanoyltransferase [Vigna angularis] >XP_017413587.1 PREDICTED: octanoyltransferase [Vigna angularis] >KAG2401362.1 Octanoyltransferase protein [Vigna angularis] >KOM36206.1 hypothetical protein LR48_Vigan02g235600 [Vigna angularis] >BAT93958.1 hypothetical protein VIGAN_08051500 [Vigna angularis var. angularis])

HSP 1 Score: 48.9 bits (115), Expect = 2.69e-05
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 1   GVWVG-----AIGVRISGGITSHGLAFNVDHHLRY 30
           GVWVG     AIGVRISGGITSHG+AFN+D  L Y
Sbjct: 137 GVWVGERKIGAIGVRISGGITSHGMAFNIDPDLSY 171

BLAST of MC10g0084 vs. NCBI nr
Match: XP_027933936.1 (octanoyltransferase LIP2, mitochondrial [Vigna unguiculata] >XP_027933937.1 octanoyltransferase LIP2, mitochondrial [Vigna unguiculata] >XP_027933938.1 octanoyltransferase LIP2, mitochondrial [Vigna unguiculata] >XP_027933939.1 octanoyltransferase LIP2, mitochondrial [Vigna unguiculata] >QCE08438.1 lipoyl [Vigna unguiculata])

HSP 1 Score: 48.9 bits (115), Expect = 2.69e-05
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 1   GVWVG-----AIGVRISGGITSHGLAFNVDHHLRY 30
           GVWVG     AIGVRISGGITSHG+AFN+D  L Y
Sbjct: 137 GVWVGERKIGAIGVRISGGITSHGMAFNIDPDLSY 171

BLAST of MC10g0084 vs. ExPASy TrEMBL
Match: A0A103Y0H2 (Selenoprotein O OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_021512 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 8.10e-06
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 1   GVWVG-----AIGVRISGGITSHGLAFNVDHHLRY 30
           GVWVG     AIGVRIS GITSHGLAFN+D  LRY
Sbjct: 730 GVWVGERKIGAIGVRISSGITSHGLAFNIDPDLRY 764

BLAST of MC10g0084 vs. ExPASy TrEMBL
Match: A0A0L9U0B9 (Lipoyl(octanoyl) transferase OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g235600 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.30e-05
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 1   GVWVG-----AIGVRISGGITSHGLAFNVDHHLRY 30
           GVWVG     AIGVRISGGITSHG+AFN+D  L Y
Sbjct: 137 GVWVGERKIGAIGVRISGGITSHGMAFNIDPDLSY 171

BLAST of MC10g0084 vs. ExPASy TrEMBL
Match: A0A0S3SMA6 (Lipoyl(octanoyl) transferase OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G051500 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.30e-05
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 1   GVWVG-----AIGVRISGGITSHGLAFNVDHHLRY 30
           GVWVG     AIGVRISGGITSHG+AFN+D  L Y
Sbjct: 137 GVWVGERKIGAIGVRISGGITSHGMAFNIDPDLSY 171

BLAST of MC10g0084 vs. ExPASy TrEMBL
Match: A0A4D6N577 (Lipoyl(octanoyl) transferase OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3467 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.30e-05
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 1   GVWVG-----AIGVRISGGITSHGLAFNVDHHLRY 30
           GVWVG     AIGVRISGGITSHG+AFN+D  L Y
Sbjct: 137 GVWVGERKIGAIGVRISGGITSHGMAFNIDPDLSY 171

BLAST of MC10g0084 vs. ExPASy TrEMBL
Match: A0A1S3UY81 (Lipoyl(octanoyl) transferase OS=Vigna radiata var. radiata OX=3916 GN=LOC106769796 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.33e-05
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 1   GVWVG-----AIGVRISGGITSHGLAFNVDHHLRY 30
           GVWVG     AIGVRISGGITSHG+AFN+D  L Y
Sbjct: 137 GVWVGERKIGAIGVRISGGITSHGMAFNIDPDLSY 171

BLAST of MC10g0084 vs. TAIR 10
Match: AT1G04640.1 (lipoyltransferase 2 )

HSP 1 Score: 46.2 bits (108), Expect = 5.3e-06
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 0

Query: 1   GVWV-----GAIGVRISGGITSHGLAFNVDHHLRY 31
           GVWV     GAIGVRIS GITSHGLA N+D  ++Y
Sbjct: 137 GVWVGDRKIGAIGVRISSGITSHGLALNIDPDMKY 171

BLAST of MC10g0084 vs. TAIR 10
Match: AT1G04640.2 (lipoyltransferase 2 )

HSP 1 Score: 46.2 bits (108), Expect = 5.3e-06
Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 0

Query: 1   GVWV-----GAIGVRISGGITSHGLAFNVDHHLRY 31
           GVWV     GAIGVRIS GITSHGLA N+D  ++Y
Sbjct: 137 GVWVGDRKIGAIGVRISSGITSHGLALNIDPDMKY 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SXP77.5e-0565.71Octanoyltransferase LIP2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=LIP2 ... [more]
Match NameE-valueIdentityDescription
XP_038879976.11.02e-0577.14octanoyltransferase LIP2, mitochondrial [Benincasa hispida] >XP_038879977.1 octa... [more]
XP_024983286.11.37e-0574.29octanoyltransferase-like [Cynara cardunculus var. scolymus] >XP_024983287.1 octa... [more]
KVI00265.11.67e-0574.29Biotin/lipoate A/B protein ligase [Cynara cardunculus var. scolymus][more]
XP_017413586.12.69e-0571.43PREDICTED: octanoyltransferase [Vigna angularis] >XP_017413587.1 PREDICTED: octa... [more]
XP_027933936.12.69e-0571.43octanoyltransferase LIP2, mitochondrial [Vigna unguiculata] >XP_027933937.1 octa... [more]
Match NameE-valueIdentityDescription
A0A103Y0H28.10e-0674.29Selenoprotein O OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_021512 PE=3... [more]
A0A0L9U0B91.30e-0571.43Lipoyl(octanoyl) transferase OS=Phaseolus angularis OX=3914 GN=LR48_Vigan02g2356... [more]
A0A0S3SMA61.30e-0571.43Lipoyl(octanoyl) transferase OS=Vigna angularis var. angularis OX=157739 GN=Viga... [more]
A0A4D6N5771.30e-0571.43Lipoyl(octanoyl) transferase OS=Vigna unguiculata OX=3917 GN=DEO72_LG9g3467 PE=3... [more]
A0A1S3UY811.33e-0571.43Lipoyl(octanoyl) transferase OS=Vigna radiata var. radiata OX=3916 GN=LOC1067697... [more]
Match NameE-valueIdentityDescription
AT1G04640.15.3e-0665.71lipoyltransferase 2 [more]
AT1G04640.25.3e-0665.71lipoyltransferase 2 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.930.10Bira Bifunctional Protein; Domain 2coord: 1..30
e-value: 1.9E-6
score: 29.4
NoneNo IPR availableSUPERFAMILY55681Class II aaRS and biotin synthetasescoord: 4..29
IPR004143Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domainPROSITEPS51733BPL_LPL_CATALYTICcoord: 1..30
score: 11.747812

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g0084.1MC10g0084.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006464 cellular protein modification process
biological_process GO:0009249 protein lipoylation
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0043167 ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016415 octanoyltransferase activity