MC10g0036 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g0036
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	MC10: 231007 .. 231153 (+)
RNA-Seq Expression	MC10g0036
Synteny	MC10g0036

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGGCGAAGCGGTGGAGTGCTGCACCCTAGATGGCGAGAGTCCAGTAGTCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTAGAATCCCGTGTGAATCAGCAAGGACCATCTTGCAAGGCTAAATACTCC

mRNA sequence

CTAGGCGAAGCGGTGGAGTGCTGCACCCTAGATGGCGAGAGTCCAGTAGTCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTAGAATCCCGTGTGAATCAGCAAGGACCATCTTGCAAGGCTAAATACTCC

Coding sequence (CDS)

CTAGGCGAAGCGGTGGAGTGCTGCACCCTAGATGGCGAGAGTCCAGTAGTCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTAGAATCCCGTGTGAATCAGCAAGGACCATCTTGCAAGGCTAAATACTCC

Protein sequence

LGEAVECCTLDGESPVVESITSLRSDPSSMGHVESRVNQQGPSCKAKYS

Homology

[Close]

BLAST of MC10g0036 vs. NCBI nr
Match: GGP32287.1 (hypothetical protein GCM10010230_68480 [Streptomyces narbonensis])

HSP 1 Score: 98.6 bits (244), Expect = 1.41e-25
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  LGEAVECCTLDGESPVVESITSLRSDPSSMGHVESRVNQQGPSCKAKYS 49
          LGEAVECCTLDGESPV ESITSLRSDPSSMGHVESRVNQQGP CKAKYS
Sbjct: 15 LGEAVECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYS 63

[Close]

BLAST of MC10g0036 vs. NCBI nr
Match: PKA47011.1 (hypothetical protein AXF42_Ash011685 [Apostasia shenzhenica])

HSP 1 Score: 97.1 bits (240), Expect = 4.30e-25
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1  LGEAVECCTLDGESPVVESITSLRSDPSSMGHVESRVNQQGPSCKAKYS 49
          LGEAVECCTLDGESPV ESITSLRSDPSSMGHVESRVNQQGP CK KYS
Sbjct: 13 LGEAVECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKTKYS 61

[Close]

BLAST of MC10g0036 vs. NCBI nr
Match: KAF1859008.1 (hypothetical protein Lal_00000831 [Lupinus albus])

HSP 1 Score: 95.9 bits (237), Expect = 1.65e-24
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  LGEAVECCTLDGESPVVESITSLRSDPSSMGHVESRVNQQGPSCKAKYS 49
          LGEAVECCTLDGESPV ESITSLRSDPSSMG+VESRVNQQGP CKAKYS
Sbjct: 15 LGEAVECCTLDGESPVAESITSLRSDPSSMGNVESRVNQQGPPCKAKYS 63

[Close]

BLAST of MC10g0036 vs. NCBI nr
Match: KAD5803427.1 (hypothetical protein E3N88_14787 [Mikania micrantha])

HSP 1 Score: 98.6 bits (244), Expect = 1.73e-24
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  LGEAVECCTLDGESPVVESITSLRSDPSSMGHVESRVNQQGPSCKAKYS 49
          LGEAVECCTLDGESPV ESITSLRSDPSSMGHVESRVNQQGP CKAKYS
Sbjct: 34 LGEAVECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYS 82

[Close]

BLAST of MC10g0036 vs. NCBI nr
Match: KAD0832391.1 (hypothetical protein E3N88_43649 [Mikania micrantha] >KAD5961648.1 hypothetical protein E3N88_13121 [Mikania micrantha])

HSP 1 Score: 97.8 bits (242), Expect = 3.29e-24
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1   LGEAVECCTLDGESPVVESITSLRSDPSSMGHVESRVNQQGPSCKAKYS 49
           +GEAVECCTLDGESPV ESITSLRSDPSSMGHVESRVNQQGP CKAKYS
Sbjct: 78  IGEAVECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYS 126

[Close]

BLAST of MC10g0036 vs. ExPASy TrEMBL
Match: A0A2H9ZUN4 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash011685 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.08e-25
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0


Query: 1  LGEAVECCTLDGESPVVESITSLRSDPSSMGHVESRVNQQGPSCKAKYS 49
          LGEAVECCTLDGESPV ESITSLRSDPSSMGHVESRVNQQGP CK KYS
Sbjct: 13 LGEAVECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKTKYS 61

[Close]

BLAST of MC10g0036 vs. ExPASy TrEMBL
Match: A0A6A5LG04 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00000831 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.98e-25
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  LGEAVECCTLDGESPVVESITSLRSDPSSMGHVESRVNQQGPSCKAKYS 49
          LGEAVECCTLDGESPV ESITSLRSDPSSMG+VESRVNQQGP CKAKYS
Sbjct: 15 LGEAVECCTLDGESPVAESITSLRSDPSSMGNVESRVNQQGPPCKAKYS 63

[Close]

BLAST of MC10g0036 vs. ExPASy TrEMBL
Match: A0A5N6P3Q7 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_14787 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.37e-25
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  LGEAVECCTLDGESPVVESITSLRSDPSSMGHVESRVNQQGPSCKAKYS 49
          LGEAVECCTLDGESPV ESITSLRSDPSSMGHVESRVNQQGP CKAKYS
Sbjct: 34 LGEAVECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYS 82

[Close]

BLAST of MC10g0036 vs. ExPASy TrEMBL
Match: A0A5N6P9A0 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_13121 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.59e-24
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1   LGEAVECCTLDGESPVVESITSLRSDPSSMGHVESRVNQQGPSCKAKYS 49
           +GEAVECCTLDGESPV ESITSLRSDPSSMGHVESRVNQQGP CKAKYS
Sbjct: 78  IGEAVECCTLDGESPVAESITSLRSDPSSMGHVESRVNQQGPPCKAKYS 126

[Close]

BLAST of MC10g0036 vs. ExPASy TrEMBL
Match: W9SF47 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000615 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.64e-24
Identity = 47/49 (95.92%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  LGEAVECCTLDGESPVVESITSLRSDPSSMGHVESRVNQQGPSCKAKYS 49
          LGEAVE CTLDGESPVVESITSLRSDPSSMGHVESRVNQQGP CKAKYS
Sbjct: 13 LGEAVEYCTLDGESPVVESITSLRSDPSSMGHVESRVNQQGPPCKAKYS 61

The following BLAST results are available for this feature:

BLAST of MC10g0036 vs.


Match Name	E-value	Identity	Description

BLAST of MC10g0036 vs. NCBI nr


Match Name	E-value	Identity	Description
GGP32287.1	1.41e-25	95.92	hypothetical protein GCM10010230_68480 [Streptomyces narbonensis]	[more]
PKA47011.1	4.30e-25	93.88	hypothetical protein AXF42_Ash011685 [Apostasia shenzhenica]	[more]
KAF1859008.1	1.65e-24	93.88	hypothetical protein Lal_00000831 [Lupinus albus]	[more]
KAD5803427.1	1.73e-24	95.92	hypothetical protein E3N88_14787 [Mikania micrantha]	[more]
KAD0832391.1	3.29e-24	93.88	hypothetical protein E3N88_43649 [Mikania micrantha] >KAD5961648.1 hypothetical ...	[more]

BLAST of MC10g0036 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H9ZUN4	2.08e-25	93.88	Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash011685 P...	[more]
A0A6A5LG04	7.98e-25	93.88	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00000831 PE=4 SV=1	[more]
A0A5N6P3Q7	8.37e-25	95.92	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_14787 PE=4 SV=1	[more]
A0A5N6P9A0	1.59e-24	93.88	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_13121 PE=4 SV=1	[more]
W9SF47	2.64e-24	95.92	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000615 PE=4 SV=1	[more]

BLAST of MC10g0036 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g0036.1	MC10g0036.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds