MC09g_new0368 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g_new0368
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionProline transporter 1
LocationMC09: 17468342 .. 17468791 (-)
RNA-Seq ExpressionMC09g_new0368
SyntenyMC09g_new0368
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAATTTTCCACTGCTCCGCTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTCTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTATTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATTCGAGTGCTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGGAAATGGGAAGCCCTCGAACGGATCCCAAACGTCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAAAGCTTGGAATCAGCGACATGTTTCTTCAAATTTTGATGAAATTGGAGAACACAGAGAGTGATTGA

mRNA sequence

ATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAATTTTCCACTGCTCCGCTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTCTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTATTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATTCGAGTGCTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGGAAATGGGAAGCCCTCGAACGGATCCCAAACGTCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAAAGCTTGGAATCAGCGACATGTTTCTTCAAATTTTGATGAAATTGGAGAACACAGAGAGTGATTGA

Coding sequence (CDS)

ATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAATTTTCCACTGCTCCGCTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTCTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTATTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATTCGAGTGCTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGGAAATGGGAAGCCCTCGAACGGATCCCAAACGTCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAAAGCTTGGAATCAGCGACATGTTTCTTCAAATTTTGATGAAATTGGAGAACACAGAGAGTGATTGA

Protein sequence

MLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKMLLRRPPKKLGISDMFLQILMKLENTESD
Homology
BLAST of MC09g_new0368 vs. NCBI nr
Match: KVI11914.1 (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 160 bits (405), Expect = 1.20e-44
Identity = 93/134 (69.40%), Postives = 102/134 (76.12%), Query Frame = 0

Query: 3   AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
           AFT S  AFSG+LNLL+NFPLLRS LCH+SF SS S  LSPLIC+ L  STSTFTSSFLI
Sbjct: 173 AFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLSPLICKILSSSTSTFTSSFLI 232

Query: 63  PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKML 122
           PGRSALKT ASGVSFQS RV  KAEVS  E    ++  E+G GK  NGSQ S   GSKML
Sbjct: 233 PGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEVGKGKSLNGSQISMANGSKML 292

Query: 123 LRRPPKKLGISDMF 136
            RRPPKKLG+ D+F
Sbjct: 293 FRRPPKKLGMIDIF 302

BLAST of MC09g_new0368 vs. NCBI nr
Match: VFQ82571.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 136 bits (342), Expect = 1.38e-37
Identity = 88/145 (60.69%), Postives = 93/145 (64.14%), Query Frame = 0

Query: 3   AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
           AFT S  AFSGS N   N PLLRS  CHLS FSS SLLLSPLIC+ LP STSTFTSSF  
Sbjct: 25  AFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFSLLLSPLICKILPSSTSTFTSSFFS 84

Query: 63  PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKML 122
           PGRSAL TW SGVSFQSIR  A A+VS      L       NG P  GSQ S E GS   
Sbjct: 85  PGRSALNTWLSGVSFQSIRAFANADVS------LGVLTAFENGNPWKGSQKSRENGSGTW 144

Query: 123 LR-RPPKKLGISDMFLQILMKLENT 146
           LR RPPKKLGI ++  Q   +L  T
Sbjct: 145 LRERPPKKLGIREILPQTKRELIRT 163

BLAST of MC09g_new0368 vs. NCBI nr
Match: CAB3496390.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 127 bits (320), Expect = 2.55e-34
Identity = 85/134 (63.43%), Postives = 88/134 (65.67%), Query Frame = 0

Query: 3   AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
           A   S LAFSGSLNL  N PLLRS  CH SFFSS SLL SPLI RTLP S STFTSSF  
Sbjct: 25  ALICSVLAFSGSLNLRRNLPLLRSTRCHWSFFSSRSLLRSPLIWRTLPSSISTFTSSFFS 84

Query: 63  PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANA-VELGNGKPSNGSQTSSEKGSKM 122
           PG SALKTWASGVSFQS+R  A A VSE+ E       +   NGK   GSQ S EKGS  
Sbjct: 85  PGTSALKTWASGVSFQSMRAPANAAVSESVEMRGKRLPLREPNGKSWKGSQMSREKGSNT 144

Query: 123 LLRRPPKKLGISDM 135
           LLRR      ISDM
Sbjct: 145 LLRR------ISDM 152

BLAST of MC09g_new0368 vs. NCBI nr
Match: CAG1834096.1 (unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 127 bits (318), Expect = 1.46e-33
Identity = 82/135 (60.74%), Postives = 88/135 (65.19%), Query Frame = 0

Query: 1   MLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSF 60
           M AFT STLAFSG  NL  N PLLRS  C +S FSSCS L SPLI RT P STST TSSF
Sbjct: 23  MAAFTCSTLAFSGRRNLRRNLPLLRSTRCQVSVFSSCSRLRSPLIRRTRPSSTSTMTSSF 82

Query: 61  LIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSK 120
           L PG+SAL T ASGVSFQS R  A A+ S     A     E+  GKP  GSQ S EKGSK
Sbjct: 83  LSPGKSALNTCASGVSFQSTRAAAMADASPGTV-AGEKEREVWKGKPWMGSQASREKGSK 142

Query: 121 MLLRRPPKKLGISDM 135
           M  RR P   G+SD+
Sbjct: 143 MRPRREPNPKGVSDI 156

BLAST of MC09g_new0368 vs. NCBI nr
Match: BAS70261.1 (Os01g0136050, partial [Oryza sativa Japonica Group])

HSP 1 Score: 126 bits (316), Expect = 1.82e-33
Identity = 87/133 (65.41%), Postives = 92/133 (69.17%), Query Frame = 0

Query: 1   MLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSF 60
           MLAFT STLAFSGSLN  MN PLLRS  CHLSF SS SLL  PLI  TLP STSTFTSSF
Sbjct: 44  MLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSSFSLLRCPLITSTLPSSTSTFTSSF 103

Query: 61  LIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSK 120
           L PGRSALKT  SGVSFQS R LAKA VS +E   +A   E     PS GSQ S+ KGS 
Sbjct: 104 LTPGRSALKTCDSGVSFQSTRALAKAAVSRSE---VAGTRE--RKTPSKGSQKSA-KGSN 163

Query: 121 MLLRRPPKKLGIS 133
            LLR     +G+S
Sbjct: 164 TLLRLTSDIVGLS 170

BLAST of MC09g_new0368 vs. ExPASy TrEMBL
Match: A0A0A0KSC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1)

HSP 1 Score: 198 bits (503), Expect = 4.27e-62
Identity = 112/138 (81.16%), Postives = 117/138 (84.78%), Query Frame = 0

Query: 1   MLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSF 60
           MLAFTSSTLAFSGSLNLLMNFP LRSILCHLSFFSSCSLLLSPLIC+TLP STST TSSF
Sbjct: 25  MLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSSCSLLLSPLICKTLPSSTSTLTSSF 84

Query: 61  LIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSK 120
           LIPGRSALK WA GVSFQS+RVLAKAEVS AEE ALA   E   GKPS GSQ S+EKGSK
Sbjct: 85  LIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGALAKEFE--KGKPSKGSQMSNEKGSK 144

Query: 121 MLLRRPPKKLGISDMFLQ 138
            LLRRPPK LG   M ++
Sbjct: 145 TLLRRPPKMLGTRAMVVE 160

BLAST of MC09g_new0368 vs. ExPASy TrEMBL
Match: A0A103YMN4 (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009654 PE=4 SV=1)

HSP 1 Score: 160 bits (405), Expect = 5.80e-45
Identity = 93/134 (69.40%), Postives = 102/134 (76.12%), Query Frame = 0

Query: 3   AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
           AFT S  AFSG+LNLL+NFPLLRS LCH+SF SS S  LSPLIC+ L  STSTFTSSFLI
Sbjct: 173 AFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLSPLICKILSSSTSTFTSSFLI 232

Query: 63  PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKML 122
           PGRSALKT ASGVSFQS RV  KAEVS  E    ++  E+G GK  NGSQ S   GSKML
Sbjct: 233 PGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEVGKGKSLNGSQISMANGSKML 292

Query: 123 LRRPPKKLGISDMF 136
            RRPPKKLG+ D+F
Sbjct: 293 FRRPPKKLGMIDIF 302

BLAST of MC09g_new0368 vs. ExPASy TrEMBL
Match: A0A7C9D9Y3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 148 bits (374), Expect = 8.65e-43
Identity = 91/134 (67.91%), Postives = 95/134 (70.90%), Query Frame = 0

Query: 3   AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
           AFTSS LAFSG  N   N PL RS  CHLSFFSSCSL+LSPLI R LP STSTFTSSFL 
Sbjct: 25  AFTSSILAFSGRRNRRRNLPLARSTRCHLSFFSSCSLVLSPLIWRILPSSTSTFTSSFLT 84

Query: 63  PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGK-PSNGSQTSSEKGSKM 122
           PGRS L TWASGVSFQS  VL   +VS A E  L   +E    K PSNGSQTS E GS  
Sbjct: 85  PGRSTLNTWASGVSFQSTLVLTNCDVSRAAE--LGCTLERAEDKNPSNGSQTSRENGSNT 144

Query: 123 LLRRPPKKLGISDM 135
           L+ R PKKLGISDM
Sbjct: 145 LVFRLPKKLGISDM 156

BLAST of MC09g_new0368 vs. ExPASy TrEMBL
Match: A0A484M1B1 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 6.70e-38
Identity = 88/145 (60.69%), Postives = 93/145 (64.14%), Query Frame = 0

Query: 3   AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
           AFT S  AFSGS N   N PLLRS  CHLS FSS SLLLSPLIC+ LP STSTFTSSF  
Sbjct: 25  AFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFSLLLSPLICKILPSSTSTFTSSFFS 84

Query: 63  PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKML 122
           PGRSAL TW SGVSFQSIR  A A+VS      L       NG P  GSQ S E GS   
Sbjct: 85  PGRSALNTWLSGVSFQSIRAFANADVS------LGVLTAFENGNPWKGSQKSRENGSGTW 144

Query: 123 LR-RPPKKLGISDMFLQILMKLENT 146
           LR RPPKKLGI ++  Q   +L  T
Sbjct: 145 LRERPPKKLGIREILPQTKRELIRT 163

BLAST of MC09g_new0368 vs. ExPASy TrEMBL
Match: A0A0A8YU32 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 130 bits (328), Expect = 9.07e-36
Identity = 82/123 (66.67%), Postives = 85/123 (69.11%), Query Frame = 0

Query: 3   AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
           A   S LAFSGS N   N PLLRS  CHLSFFSSCSLL SPLI RTLP S STFTSSF  
Sbjct: 25  ALICSVLAFSGSRNRRRNLPLLRSTRCHLSFFSSCSLLRSPLIWRTLPSSISTFTSSFFS 84

Query: 63  PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKML 122
           PG SALKT ASGVSFQS+R  AKA VSE EE    N + L  GKP  GSQ S +KGS  L
Sbjct: 85  PGTSALKTCASGVSFQSMRAPAKAAVSEPEE-VRGNRLPLLKGKPWKGSQRSRDKGSNAL 144

Query: 123 LRR 125
            RR
Sbjct: 145 PRR 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KVI11914.11.20e-4469.40hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus][more]
VFQ82571.11.38e-3760.69unnamed protein product [Cuscuta campestris][more]
CAB3496390.12.55e-3463.43unnamed protein product [Digitaria exilis][more]
CAG1834096.11.46e-3360.74unnamed protein product [Musa acuminata subsp. malaccensis][more]
BAS70261.11.82e-3365.41Os01g0136050, partial [Oryza sativa Japonica Group][more]
Match NameE-valueIdentityDescription
A0A0A0KSC04.27e-6281.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1[more]
A0A103YMN45.80e-4569.40Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 ... [more]
A0A7C9D9Y38.65e-4367.91Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A484M1B16.70e-3860.69Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 ... [more]
A0A0A8YU329.07e-3666.67Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g_new0368.1MC09g_new0368.1mRNA