Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAATTTTCCACTGCTCCGCTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTCTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTATTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATTCGAGTGCTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGGAAATGGGAAGCCCTCGAACGGATCCCAAACGTCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAAAGCTTGGAATCAGCGACATGTTTCTTCAAATTTTGATGAAATTGGAGAACACAGAGAGTGATTGA
mRNA sequence
ATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAATTTTCCACTGCTCCGCTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTCTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTATTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATTCGAGTGCTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGGAAATGGGAAGCCCTCGAACGGATCCCAAACGTCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAAAGCTTGGAATCAGCGACATGTTTCTTCAAATTTTGATGAAATTGGAGAACACAGAGAGTGATTGA
Coding sequence (CDS)
ATGCTGGCCTTCACCTCCTCAACTTTGGCATTCTCCGGCAGCCTGAATCTCCTCATGAATTTTCCACTGCTCCGCTCGATTCTGTGCCATTTGTCGTTCTTCTCCTCCTGCTCTCTGCTTCTCTCTCCACTGATCTGCAGAACTCTTCCCTATTCAACCTCCACTTTCACTTCCTCCTTTTTGATCCCTGGAAGATCGGCCTTGAAGACGTGGGCTTCTGGGGTCTCCTTCCAGTCGATTCGAGTGCTGGCAAAAGCAGAGGTTTCAGAAGCAGAGGAATGGGCGTTGGCCAATGCGGTGGAATTGGGAAATGGGAAGCCCTCGAACGGATCCCAAACGTCCAGCGAGAAGGGGTCGAAGATGTTGCTGCGGCGGCCACCGAAAAAGCTTGGAATCAGCGACATGTTTCTTCAAATTTTGATGAAATTGGAGAACACAGAGAGTGATTGA
Protein sequence
MLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKMLLRRPPKKLGISDMFLQILMKLENTESD
Homology
BLAST of MC09g_new0368 vs. NCBI nr
Match:
KVI11914.1 (hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus])
HSP 1 Score: 160 bits (405), Expect = 1.20e-44
Identity = 93/134 (69.40%), Postives = 102/134 (76.12%), Query Frame = 0
Query: 3 AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
AFT S AFSG+LNLL+NFPLLRS LCH+SF SS S LSPLIC+ L STSTFTSSFLI
Sbjct: 173 AFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLSPLICKILSSSTSTFTSSFLI 232
Query: 63 PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKML 122
PGRSALKT ASGVSFQS RV KAEVS E ++ E+G GK NGSQ S GSKML
Sbjct: 233 PGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEVGKGKSLNGSQISMANGSKML 292
Query: 123 LRRPPKKLGISDMF 136
RRPPKKLG+ D+F
Sbjct: 293 FRRPPKKLGMIDIF 302
BLAST of MC09g_new0368 vs. NCBI nr
Match:
VFQ82571.1 (unnamed protein product [Cuscuta campestris])
HSP 1 Score: 136 bits (342), Expect = 1.38e-37
Identity = 88/145 (60.69%), Postives = 93/145 (64.14%), Query Frame = 0
Query: 3 AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
AFT S AFSGS N N PLLRS CHLS FSS SLLLSPLIC+ LP STSTFTSSF
Sbjct: 25 AFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFSLLLSPLICKILPSSTSTFTSSFFS 84
Query: 63 PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKML 122
PGRSAL TW SGVSFQSIR A A+VS L NG P GSQ S E GS
Sbjct: 85 PGRSALNTWLSGVSFQSIRAFANADVS------LGVLTAFENGNPWKGSQKSRENGSGTW 144
Query: 123 LR-RPPKKLGISDMFLQILMKLENT 146
LR RPPKKLGI ++ Q +L T
Sbjct: 145 LRERPPKKLGIREILPQTKRELIRT 163
BLAST of MC09g_new0368 vs. NCBI nr
Match:
CAB3496390.1 (unnamed protein product [Digitaria exilis])
HSP 1 Score: 127 bits (320), Expect = 2.55e-34
Identity = 85/134 (63.43%), Postives = 88/134 (65.67%), Query Frame = 0
Query: 3 AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
A S LAFSGSLNL N PLLRS CH SFFSS SLL SPLI RTLP S STFTSSF
Sbjct: 25 ALICSVLAFSGSLNLRRNLPLLRSTRCHWSFFSSRSLLRSPLIWRTLPSSISTFTSSFFS 84
Query: 63 PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANA-VELGNGKPSNGSQTSSEKGSKM 122
PG SALKTWASGVSFQS+R A A VSE+ E + NGK GSQ S EKGS
Sbjct: 85 PGTSALKTWASGVSFQSMRAPANAAVSESVEMRGKRLPLREPNGKSWKGSQMSREKGSNT 144
Query: 123 LLRRPPKKLGISDM 135
LLRR ISDM
Sbjct: 145 LLRR------ISDM 152
BLAST of MC09g_new0368 vs. NCBI nr
Match:
CAG1834096.1 (unnamed protein product [Musa acuminata subsp. malaccensis])
HSP 1 Score: 127 bits (318), Expect = 1.46e-33
Identity = 82/135 (60.74%), Postives = 88/135 (65.19%), Query Frame = 0
Query: 1 MLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSF 60
M AFT STLAFSG NL N PLLRS C +S FSSCS L SPLI RT P STST TSSF
Sbjct: 23 MAAFTCSTLAFSGRRNLRRNLPLLRSTRCQVSVFSSCSRLRSPLIRRTRPSSTSTMTSSF 82
Query: 61 LIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSK 120
L PG+SAL T ASGVSFQS R A A+ S A E+ GKP GSQ S EKGSK
Sbjct: 83 LSPGKSALNTCASGVSFQSTRAAAMADASPGTV-AGEKEREVWKGKPWMGSQASREKGSK 142
Query: 121 MLLRRPPKKLGISDM 135
M RR P G+SD+
Sbjct: 143 MRPRREPNPKGVSDI 156
BLAST of MC09g_new0368 vs. NCBI nr
Match:
BAS70261.1 (Os01g0136050, partial [Oryza sativa Japonica Group])
HSP 1 Score: 126 bits (316), Expect = 1.82e-33
Identity = 87/133 (65.41%), Postives = 92/133 (69.17%), Query Frame = 0
Query: 1 MLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSF 60
MLAFT STLAFSGSLN MN PLLRS CHLSF SS SLL PLI TLP STSTFTSSF
Sbjct: 44 MLAFTWSTLAFSGSLNRRMNCPLLRSTRCHLSFLSSFSLLRCPLITSTLPSSTSTFTSSF 103
Query: 61 LIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSK 120
L PGRSALKT SGVSFQS R LAKA VS +E +A E PS GSQ S+ KGS
Sbjct: 104 LTPGRSALKTCDSGVSFQSTRALAKAAVSRSE---VAGTRE--RKTPSKGSQKSA-KGSN 163
Query: 121 MLLRRPPKKLGIS 133
LLR +G+S
Sbjct: 164 TLLRLTSDIVGLS 170
BLAST of MC09g_new0368 vs. ExPASy TrEMBL
Match:
A0A0A0KSC0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1)
HSP 1 Score: 198 bits (503), Expect = 4.27e-62
Identity = 112/138 (81.16%), Postives = 117/138 (84.78%), Query Frame = 0
Query: 1 MLAFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSF 60
MLAFTSSTLAFSGSLNLLMNFP LRSILCHLSFFSSCSLLLSPLIC+TLP STST TSSF
Sbjct: 25 MLAFTSSTLAFSGSLNLLMNFPQLRSILCHLSFFSSCSLLLSPLICKTLPSSTSTLTSSF 84
Query: 61 LIPGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSK 120
LIPGRSALK WA GVSFQS+RVLAKAEVS AEE ALA E GKPS GSQ S+EKGSK
Sbjct: 85 LIPGRSALKMWACGVSFQSMRVLAKAEVSRAEEGALAKEFE--KGKPSKGSQMSNEKGSK 144
Query: 121 MLLRRPPKKLGISDMFLQ 138
LLRRPPK LG M ++
Sbjct: 145 TLLRRPPKMLGTRAMVVE 160
BLAST of MC09g_new0368 vs. ExPASy TrEMBL
Match:
A0A103YMN4 (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009654 PE=4 SV=1)
HSP 1 Score: 160 bits (405), Expect = 5.80e-45
Identity = 93/134 (69.40%), Postives = 102/134 (76.12%), Query Frame = 0
Query: 3 AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
AFT S AFSG+LNLL+NFPLLRS LCH+SF SS S LSPLIC+ L STSTFTSSFLI
Sbjct: 173 AFTCSNFAFSGNLNLLVNFPLLRSTLCHVSFLSSFSTFLSPLICKILSSSTSTFTSSFLI 232
Query: 63 PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKML 122
PGRSALKT ASGVSFQS RV KAEVS E ++ E+G GK NGSQ S GSKML
Sbjct: 233 PGRSALKTCASGVSFQSTRVFTKAEVSLQE----SDPDEVGKGKSLNGSQISMANGSKML 292
Query: 123 LRRPPKKLGISDMF 136
RRPPKKLG+ D+F
Sbjct: 293 FRRPPKKLGMIDIF 302
BLAST of MC09g_new0368 vs. ExPASy TrEMBL
Match:
A0A7C9D9Y3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)
HSP 1 Score: 148 bits (374), Expect = 8.65e-43
Identity = 91/134 (67.91%), Postives = 95/134 (70.90%), Query Frame = 0
Query: 3 AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
AFTSS LAFSG N N PL RS CHLSFFSSCSL+LSPLI R LP STSTFTSSFL
Sbjct: 25 AFTSSILAFSGRRNRRRNLPLARSTRCHLSFFSSCSLVLSPLIWRILPSSTSTFTSSFLT 84
Query: 63 PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGK-PSNGSQTSSEKGSKM 122
PGRS L TWASGVSFQS VL +VS A E L +E K PSNGSQTS E GS
Sbjct: 85 PGRSTLNTWASGVSFQSTLVLTNCDVSRAAE--LGCTLERAEDKNPSNGSQTSRENGSNT 144
Query: 123 LLRRPPKKLGISDM 135
L+ R PKKLGISDM
Sbjct: 145 LVFRLPKKLGISDM 156
BLAST of MC09g_new0368 vs. ExPASy TrEMBL
Match:
A0A484M1B1 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 SV=1)
HSP 1 Score: 136 bits (342), Expect = 6.70e-38
Identity = 88/145 (60.69%), Postives = 93/145 (64.14%), Query Frame = 0
Query: 3 AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
AFT S AFSGS N N PLLRS CHLS FSS SLLLSPLIC+ LP STSTFTSSF
Sbjct: 25 AFTWSNFAFSGSRNRRRNLPLLRSRRCHLSSFSSFSLLLSPLICKILPSSTSTFTSSFFS 84
Query: 63 PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKML 122
PGRSAL TW SGVSFQSIR A A+VS L NG P GSQ S E GS
Sbjct: 85 PGRSALNTWLSGVSFQSIRAFANADVS------LGVLTAFENGNPWKGSQKSRENGSGTW 144
Query: 123 LR-RPPKKLGISDMFLQILMKLENT 146
LR RPPKKLGI ++ Q +L T
Sbjct: 145 LRERPPKKLGIREILPQTKRELIRT 163
BLAST of MC09g_new0368 vs. ExPASy TrEMBL
Match:
A0A0A8YU32 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)
HSP 1 Score: 130 bits (328), Expect = 9.07e-36
Identity = 82/123 (66.67%), Postives = 85/123 (69.11%), Query Frame = 0
Query: 3 AFTSSTLAFSGSLNLLMNFPLLRSILCHLSFFSSCSLLLSPLICRTLPYSTSTFTSSFLI 62
A S LAFSGS N N PLLRS CHLSFFSSCSLL SPLI RTLP S STFTSSF
Sbjct: 25 ALICSVLAFSGSRNRRRNLPLLRSTRCHLSFFSSCSLLRSPLIWRTLPSSISTFTSSFFS 84
Query: 63 PGRSALKTWASGVSFQSIRVLAKAEVSEAEEWALANAVELGNGKPSNGSQTSSEKGSKML 122
PG SALKT ASGVSFQS+R AKA VSE EE N + L GKP GSQ S +KGS L
Sbjct: 85 PGTSALKTCASGVSFQSMRAPAKAAVSEPEE-VRGNRLPLLKGKPWKGSQRSRDKGSNAL 144
Query: 123 LRR 125
RR
Sbjct: 145 PRR 146
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KVI11914.1 | 1.20e-44 | 69.40 | hypothetical protein Ccrd_009654, partial [Cynara cardunculus var. scolymus] | [more] |
VFQ82571.1 | 1.38e-37 | 60.69 | unnamed protein product [Cuscuta campestris] | [more] |
CAB3496390.1 | 2.55e-34 | 63.43 | unnamed protein product [Digitaria exilis] | [more] |
CAG1834096.1 | 1.46e-33 | 60.74 | unnamed protein product [Musa acuminata subsp. malaccensis] | [more] |
BAS70261.1 | 1.82e-33 | 65.41 | Os01g0136050, partial [Oryza sativa Japonica Group] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0KSC0 | 4.27e-62 | 81.16 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G197120 PE=4 SV=1 | [more] |
A0A103YMN4 | 5.80e-45 | 69.40 | Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus OX=59895 ... | [more] |
A0A7C9D9Y3 | 8.65e-43 | 67.91 | Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | [more] |
A0A484M1B1 | 6.70e-38 | 60.69 | Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS24347 PE=4 ... | [more] |
A0A0A8YU32 | 9.07e-36 | 66.67 | Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |