MC09g_new0350 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g_new0350
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRING-H2 finger protein
LocationMC09: 16851734 .. 16853269 (-)
RNA-Seq ExpressionMC09g_new0350
SyntenyMC09g_new0350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACTTCTCATTGAAGATATGATTATCAAATTTAACGTCATACTCCGCTCTCATGAGCATACCTTATCTTTCATTTCTTTTAAGCCCTTTTCATTAGGGAGAGAACTTTCCTTTCACATGTAGTCCACATGGCATCTTTTTCTTTTTTCATGATTTTTTTTGTTTATTTTTTCGAAAATAAAAATAAAACAAAGCTTAGGAATGTTTGAGTCTAGTAAGTTAAAGACACCATATTTCGAAACCTCAATCCATTTGTTGGTCAGATCTCTAAGAGATATTATACTAATTAATCAAACACTCTAAGTATTTAATGTAATGTAAATTACAGTCAAATATTCTCAAATTTTGACCTACCTCAAAACTCCACATTCTTTCACGAAAATTACAGCCAATGCCACCTCATACATTTTACTACATTTTCTAAATTATCGTAATCTATAAACTCAGATTTTTTAAACTAATTTAATACTTAGTCTAACTTGAGAATCTAATTAATACTGATAATCACTTGTTTACTACGGAATCTAATTTTCTCAAAAAAGTGATAAGAATATGAAAAAAAATACTATTTTTAGTTCACTGGCAGTTTAACATGATATACAAGTGAAAATTGTATGTTCGAACTCTTGTAATGTTGCTTCAGACCTGTTCAAGATTGGCAGAGAGATCGACACGTAGAGAGACTCGGCAAAGCGGGCAGCTCGACTGTGACCGGAGCCACTGGTCGACGCACTCGGAGTGAAAATAATGGCGGCACGGCGGCAGAACCTTAACTTTGTCCCCTTCCTCAAACACGCCCAAGCAAATACAGCACTCCGCCGTCGCCGCCGCCGCCGGCTTGTGCAGGGTAATCGGAAGGCAGAGGATCGCGGCCGGATCGAGCCCTTGCGGCGGCGGAACGGCGGCGGAGAACGCCGTGAGGCGGTGGAATCTGCAGACCCATCGGGCGTAAAGGAAAATAAAGGTAACGAGAAGGATTACGGCGAACAGAACGACGACGAAGAAGAAAGGCCGGCCGCGGATTTGGAAGATCCGGTCGTCGAACTCTGTGAAGTGCCAGGGGAGCGAGGGGGAAACTTGGGATGTCGACATTTTAATCGGCGATTCATCAATCGGACGGTGAGAATCGTGGCGGCGGAGGATGGAGATGGAAGAAGGAAGCAGGGGAAAGAATTTTGGGGGGTTTTTCGGAGCAGTGTGAAGTCAGATATTTTCTTTTTCTGAGAATAAATAATTGAGTCTTAGATATTTCTTTTGTTCAAAGATAGTTGCGTTTTGGTGGTACAGATATTATATGAAATATCTCGGCGTGCTCACTCGCGTTTAGAGCGCGTGGGAGTACAGCTTCATCGCTGCCTTTCATAGTTTTGGATGTTGGTTTTGGAAGCGTGACATGATTGACGATAATTTTCATGTCATTTTTCATATTTTTTCGGAGAAATGTCATTTTTCATTTCCACCAAACGGATTGGCTGACAATTTTCATTAGATATTTTGATGGATAAAAGTCATAAAGACATCGATTTTTCGTAAAG

mRNA sequence

ATGGCGGCACGGCGGCAGAACCTTAACTTTGTCCCCTTCCTCAAACACGCCCAAGCAAATACAGCACTCCGCCGTCGCCGCCGCCGCCGGCTTGTGCAGGGTAATCGGAAGGCAGAGGATCGCGGCCGGATCGAGCCCTTGCGGCGGCGGAACGGCGGCGGAGAACGCCGTGAGGCGGTGGAATCTGCAGACCCATCGGGCGTAAAGGAAAATAAAGGTAACGAGAAGGATTACGGCGAACAGAACGACGACGAAGAAGAAAGGCCGGCCGCGGATTTGGAAGATCCGGTCGTCGAACTCTGTGAAGTGCCAGGGGAGCGAGGGGGAAACTTGGGATGTCGACATTTTAATCGGCGATTCATCAATCGGACGGTGAGAATCGTGGCGGCGGAGGATGGAGATGGAAGAAGGAAGCAGGGGAAAGAATTTTGGGGGGTTTTTCGGAGCAGTGTGAAGTCAGATATTTTCTTTTTCTGA

Coding sequence (CDS)

ATGGCGGCACGGCGGCAGAACCTTAACTTTGTCCCCTTCCTCAAACACGCCCAAGCAAATACAGCACTCCGCCGTCGCCGCCGCCGCCGGCTTGTGCAGGGTAATCGGAAGGCAGAGGATCGCGGCCGGATCGAGCCCTTGCGGCGGCGGAACGGCGGCGGAGAACGCCGTGAGGCGGTGGAATCTGCAGACCCATCGGGCGTAAAGGAAAATAAAGGTAACGAGAAGGATTACGGCGAACAGAACGACGACGAAGAAGAAAGGCCGGCCGCGGATTTGGAAGATCCGGTCGTCGAACTCTGTGAAGTGCCAGGGGAGCGAGGGGGAAACTTGGGATGTCGACATTTTAATCGGCGATTCATCAATCGGACGGTGAGAATCGTGGCGGCGGAGGATGGAGATGGAAGAAGGAAGCAGGGGAAAGAATTTTGGGGGGTTTTTCGGAGCAGTGTGAAGTCAGATATTTTCTTTTTCTGA

Protein sequence

MAARRQNLNFVPFLKHAQANTALRRRRRRRLVQGNRKAEDRGRIEPLRRRNGGGERREAVESADPSGVKENKGNEKDYGEQNDDEEERPAADLEDPVVELCEVPGERGGNLGCRHFNRRFINRTVRIVAAEDGDGRRKQGKEFWGVFRSSVKSDIFFF
Homology
BLAST of MC09g_new0350 vs. NCBI nr
Match: PON78998.1 (hypothetical protein PanWU01x14_014990 [Parasponia andersonii])

HSP 1 Score: 74.3 bits (181), Expect = 6.06e-13
Identity = 58/142 (40.85%), Postives = 80/142 (56.34%), Query Frame = 0

Query: 1   MAARRQNLNFVPFLKHAQANTALRR----------RRRRRLVQGNRKAEDRGRIEPLRRR 60
           MAA RQ+L  +  L+H +A+TALRR           R  RLV+ NR++ DRG +E LRR 
Sbjct: 45  MAALRQHLQLLSVLEHPEADTALRRVRDPTRTRLVSRIPRLVEDNRQSHDRGGVEALRRS 104

Query: 61  NGG---------GERREAVESADPSGVKENKGNEKDYGEQNDDEEERPAADLEDPVVELC 120
            GG         GE      +ADP+G++E +G++++ GE +DDEEER AAD E  VV+  
Sbjct: 105 QGGALRVGGGWGGEGGGVAVAADPAGIEEEEGDDEEDGEDDDDEEERAAADFEVAVVQDR 164

Query: 121 EVPGERGGNLGCRHFNRRFINR 123
            VP +  G LG     R F  +
Sbjct: 165 VVPLQWLGLLGGTPHRRFFFEK 186

BLAST of MC09g_new0350 vs. NCBI nr
Match: KAF7148294.1 (hypothetical protein RHSIM_Rhsim03G0145300 [Rhododendron simsii])

HSP 1 Score: 69.3 bits (168), Expect = 1.13e-11
Identity = 61/129 (47.29%), Postives = 77/129 (59.69%), Query Frame = 0

Query: 1   MAARRQNLNFVPFLKHAQA-NTALRRRRRRRLVQGNRKAEDRGRIEPL---RRRNG---- 60
           M A RQ+ +F+P  K A+A  TALR    RR+VQ +R+A + GR+E L   RRR+G    
Sbjct: 1   MLASRQHFHFLPVFKQAKAYTTALRFGGTRRIVQYDREAVNCGRVESLGLRRRRSGDEAG 60

Query: 61  ---GGERREAVESADPSGVKENKGNEKDYGEQNDDEEERPAADLEDPVVELCEVPGERGG 118
              GGE  EA +  DPSG +E +G E D GE++D  EE  AADLE  VV+   VP E  G
Sbjct: 61  SGGGGEAAEAAD--DPSGEEEEEGGEDDEGEEDDGVEEGAAADLEVVVVQFGVVPVEGWG 120

BLAST of MC09g_new0350 vs. NCBI nr
Match: PSS33309.1 (RING-H2 finger protein [Actinidia chinensis var. chinensis])

HSP 1 Score: 55.5 bits (132), Expect = 2.15e-06
Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 0

Query: 1   MAARRQNLNFVPFLKHAQANTAL----RRRRRRRLVQGNRKAEDRGRIEP-----LRRRN 60
           MAA RQ+L+F+   KHA+ANTAL     RRR   LV+ + +A + GR+E       RRR 
Sbjct: 15  MAAIRQHLHFLSIFKHAEANTALGFAETRRRGGGLVKHDLEAVNCGRVESEVLSRRRRRV 74

Query: 61  GGGERREAVESADPSGVKENKGNEKDYGEQNDDEEERPAADLEDP-VVELCEVPGE 106
           G    R   E+ DP+GV+E    E++ GE++  EEE  AADLED  VVE   +P E
Sbjct: 75  GRMAGRGVAEATDPAGVEE----EEEDGEEDGGEEEGVAADLEDAIVVEFGVMPVE 126

BLAST of MC09g_new0350 vs. NCBI nr
Match: GFS33559.1 (hypothetical protein Acr_00g0029270 [Actinidia rufa])

HSP 1 Score: 49.3 bits (116), Expect = 4.43e-04
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 0

Query: 1   MAARRQNLNFVPFLKHAQANTALRRRRRRR----LVQGNRKAEDRGRIEP-----LRRRN 60
           MAA RQ+L+F+   KHA+ANTAL     RR    LV+ + +A + G +E       RRR 
Sbjct: 15  MAAIRQHLHFLSIFKHAEANTALGFAETRRPDGGLVKHDLEAVNCGCVESGVMSRRRRRV 74

Query: 61  GGGERREAVESADPSGVKENKGNEKDYGEQNDDEEERPAADLEDPVV 98
           G    R   E+ DP+GV+E    E++ GE+   EEE  AADLED VV
Sbjct: 75  GRVAGRGVAEATDPAGVEE----EEEDGEEAGGEEEGVAADLEDAVV 117

BLAST of MC09g_new0350 vs. ExPASy TrEMBL
Match: A0A2P5E0D3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_014990 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.93e-13
Identity = 58/142 (40.85%), Postives = 80/142 (56.34%), Query Frame = 0

Query: 1   MAARRQNLNFVPFLKHAQANTALRR----------RRRRRLVQGNRKAEDRGRIEPLRRR 60
           MAA RQ+L  +  L+H +A+TALRR           R  RLV+ NR++ DRG +E LRR 
Sbjct: 45  MAALRQHLQLLSVLEHPEADTALRRVRDPTRTRLVSRIPRLVEDNRQSHDRGGVEALRRS 104

Query: 61  NGG---------GERREAVESADPSGVKENKGNEKDYGEQNDDEEERPAADLEDPVVELC 120
            GG         GE      +ADP+G++E +G++++ GE +DDEEER AAD E  VV+  
Sbjct: 105 QGGALRVGGGWGGEGGGVAVAADPAGIEEEEGDDEEDGEDDDDEEERAAADFEVAVVQDR 164

Query: 121 EVPGERGGNLGCRHFNRRFINR 123
            VP +  G LG     R F  +
Sbjct: 165 VVPLQWLGLLGGTPHRRFFFEK 186

BLAST of MC09g_new0350 vs. ExPASy TrEMBL
Match: A0A0A0KSF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G210010 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.03e-10
Identity = 53/98 (54.08%), Postives = 59/98 (60.20%), Query Frame = 0

Query: 1   MAARRQNLNFVPFLKHAQANTAL-------RRR---RRRRLVQGNRKAEDRGRIEPL-RR 60
           M A RQNL+ +P  KHAQAN AL        RR   R RRLVQ +RK ++ G  E L RR
Sbjct: 4   MTAWRQNLHLLPVFKHAQANGALPCIVCGSARRILFRSRRLVQSDRKGDNSGGAEALLRR 63

Query: 61  RNG-------GGERREAVESADPSGVKENKGNEKDYGE 80
           R G       GGE  E VESADP+GVKENK  EKD GE
Sbjct: 64  RTGQPVDGKRGGEGGELVESADPTGVKENKSYEKDDGE 101

BLAST of MC09g_new0350 vs. ExPASy TrEMBL
Match: A0A2R6RTJ9 (RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc03697 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.04e-06
Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 0

Query: 1   MAARRQNLNFVPFLKHAQANTAL----RRRRRRRLVQGNRKAEDRGRIEP-----LRRRN 60
           MAA RQ+L+F+   KHA+ANTAL     RRR   LV+ + +A + GR+E       RRR 
Sbjct: 15  MAAIRQHLHFLSIFKHAEANTALGFAETRRRGGGLVKHDLEAVNCGRVESEVLSRRRRRV 74

Query: 61  GGGERREAVESADPSGVKENKGNEKDYGEQNDDEEERPAADLEDP-VVELCEVPGE 106
           G    R   E+ DP+GV+E    E++ GE++  EEE  AADLED  VVE   +P E
Sbjct: 75  GRMAGRGVAEATDPAGVEE----EEEDGEEDGGEEEGVAADLEDAIVVEFGVMPVE 126

BLAST of MC09g_new0350 vs. ExPASy TrEMBL
Match: A0A7J0DF29 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0029270 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.15e-04
Identity = 47/107 (43.93%), Postives = 62/107 (57.94%), Query Frame = 0

Query: 1   MAARRQNLNFVPFLKHAQANTALRRRRRRR----LVQGNRKAEDRGRIEP-----LRRRN 60
           MAA RQ+L+F+   KHA+ANTAL     RR    LV+ + +A + G +E       RRR 
Sbjct: 15  MAAIRQHLHFLSIFKHAEANTALGFAETRRPDGGLVKHDLEAVNCGCVESGVMSRRRRRV 74

Query: 61  GGGERREAVESADPSGVKENKGNEKDYGEQNDDEEERPAADLEDPVV 98
           G    R   E+ DP+GV+E    E++ GE+   EEE  AADLED VV
Sbjct: 75  GRVAGRGVAEATDPAGVEE----EEEDGEEAGGEEEGVAADLEDAVV 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
PON78998.16.06e-1340.85hypothetical protein PanWU01x14_014990 [Parasponia andersonii][more]
KAF7148294.11.13e-1147.29hypothetical protein RHSIM_Rhsim03G0145300 [Rhododendron simsii][more]
PSS33309.12.15e-0644.83RING-H2 finger protein [Actinidia chinensis var. chinensis][more]
GFS33559.14.43e-0443.93hypothetical protein Acr_00g0029270 [Actinidia rufa][more]
Match NameE-valueIdentityDescription
A0A2P5E0D32.93e-1340.85Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_014990 PE... [more]
A0A0A0KSF23.03e-1054.08Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G210010 PE=4 SV=1[more]
A0A2R6RTJ91.04e-0644.83RING-H2 finger protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00... [more]
A0A7J0DF292.15e-0443.93Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0029270 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g_new0350.1MC09g_new0350.1mRNA