MC09g_new0230 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g_new0230
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC09: 10963888 .. 10967374 (-)
RNA-Seq ExpressionMC09g_new0230
SyntenyMC09g_new0230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGAGCAACAAGGAGAAAGTGCCACGTTAGTGAGTTTTGGCGAGGGAAAACGGGAAACCAAATTTAACAAATCAGTTGTAGTAAAAAACAATTTTTTTTAATTAAAACAAATCTTTTTTTTAAAACAAAATTATTTACTTAAAATCAAATATTTATTTATTTTTTTATTTTAATAATAAATAAAATTCTTTAAAACAAAATCTATTTTTTAATTTAATTAATACTTTACCTTAAAACTAATAATAAAGTAAACTTATGTATTTTAAACCAAAATAATTAAAATACAACTTCATAAATTAATCATAAAAATAAATAGATAAATAACAAAAAATAAACCAGACCAAATATAGTGTCTTACACTTATAAACTACAAACTTCTTTTACATAAACTGAATAGACAATAAAGATTCAATTCTAATTCATTAAACATAACGGTTGACTGATAAATTTTGGTGAATCACAACTTGCCACATAATTATAATGACAAAATTATATGTCATTAAATTGAGGTCAATTAAATCATGTCACATATTATTTTTGGACATTTGAATTCGACCAATCAAAATTTCTTTGCCCTCTAGAGATCAAGGAAAAGCCAAAGAAGATCAAGATCATCATAGACGATCGAGATCAACAAGTACATAGGGCCTAGCCAATCAAGATCATCAAGCTCGATGCCGATCTAGATCATCATCAAGCTAGAGGCCGATCAAGATCATCAGTAAGCCAGAGGCTGAGCAAGATCATCATCAAGTTCGAGGCCGATCAAGATCATCATCAAGTCCGAGGCCGAGGCCAATCAAGATTATCATCAAGTCCGAGGCCGAGGCCAATCAAGATTATCATCAAGTCCGAGGCCGAGGCCAATCAAGATTATCATCAAGTCCGAGGCCGAGGCCAATCAAGATTATCATCAAGTCCGAGGCCAATCAAGATCATCATCGAGCCTGAGGTCGATCAAGATCGTCATCGTCATCGTCAAGCCAGAGGCTAACCAAGATCATCGTCAAGCAAGAGGTAGATCAAGATCATCTTCAAGCCAAAGGCTGATCAAGATCATCGTCAAGCTAGCGGCCGATTAAGATCATCGTCAAGCCGAGGCCGATCAAGATCCTCATCAAGCTAGAGGCCGATCAAGATCATCATTAAGTCGCCAATAGATAAAGCCAAAGGCAGATCAAGATCATCATCAAGCCCGAGGCCGATCAAGATCATCATCAAGCCGCCGATAGGCTGATCAAGATCCATAAGCCACCAAGAGACCGATCAGGATCAACAAGCCGCCAAGAATTCAAGGAAAAGAATCAAAGGATAAATATTAGAGATTGTACGAACCCCCTAAATATCAATACAAATTGTATTTAGTCCACGAAATATAATTTCTCCGGAAATCTTGTGTGAACAAATTGGCACACTAGTGGGACAATCTCTACCTCTCATCTCTTTCTCAATAATCAAAATTTTGCCAAAGAAAGTAATGACATTATAGAAAATTTTCTCAATAAGCTTTCTCCATGATAATGAGAAATAAATATGAAGAAGATTGCTCCTCATTGGAAGAGCTTCAAGTGTAGGATGCTCCTTCCTCGCATGAGCTCAAAAAGTGAGAGGTGAAAAAAAATATATTGAACTACGTTATGACTTGATCCCTCTTTTTAAAGGGTATATAAATAGCTTAAAGAAAAGAAAAAGTTCAGTCTACAAAAAAAAAAAAAAAAAGTTGCTGTGTCAATTATAATTTGAACATGCTTATTGTTGGGTGTTATATGGAAGGTGATCACCACTATTGAAGTAGGCGGACAAATGATCCTTGCCAAGGATAGACAATGGAACCGTCAAATTTTGACTGATCCACGTCACAATCTCATAAATGAAAAATTCAATTATTTTCGGTAAGTTGGGGACAAGATTTCATAAATTTGAATTTATATGGGATTTAAATTTCGGCATATTACAAATTTTACCCAATTTAAAATTGGAATAAAAATTCAAATTCAAATTTTATTCAAATTTCAACCCTAGATCCAAAATTCTATTCAAAGTCAAAATCTCAATAAAATTTAAATTTGGGCATATTTCAAATTTTACATTTTTACCAAATTCGAATTCAATTTGGTTATATTCCAAATCGAAATTGTGATAAAAATTCAAATTCAAACTTTATTCCTATTCAAGTCAAAATTTGAATAAGGAAATCATTTTTAAATTCGAAATCTTGGTAGAATTTTAAATTTGGGCATATTCCAAAATTTAAAAATTTACCAAATTCGAATGTCAATTTGGCCATATTCCAAATCGAGATTGGAGTAAAAATTCAAATTCAAACTTTACTCTACTTACAGTCAAAATTTGGGTATATTCCAAATTTTACAACTTTACCAAATTCAAATCTCAATTTGGCCATATTCCAAATCGAGATTGGAGTAAGAATTCAAATTCAAACTTTAATCCATTTGAAGTCAAAATTTGGGCACACTCCAAATTATTCAAACTTTTATTCAAATTCAAATTTTCAATTTGGATATATTCCAAATCAAGATTTGAGTAAAACTTCAATACTAAGACATTTTCAAAATTCATCCACAACTATGTTTGGTATAAATTTCGAAAATGGGCATTTGTTGATTGATAAATTTCTGCGAATCACAACTTGCCACATAATTATAATGACAAAACTATGTCATTAAATTGAGGTCAATTAAATAATGTCACATATTATTTTTGGGCATTTGAATTCGACCAATCAAAATAGGTTATGACCGTATGATGTCATAAATTGATTAATAAGATTGCGCCACATATGACATATAAATTGGTCCAATCAAAATTCGCCATGTCTCTTTGATGACATAAGCTGACTCAATTGGATTGTGCCACGTGGCAATGGACTTATAATTAGATGGGTCCAAGCCCACCTAAGGCCCATGAAAGACCCTATAAATAGAGGGGTTCATTTACCATCTTATCCATCCTGGAATGGATCAAAATTCTTCATCCTCCATAGGATCAAAATCCTCTCTACAAATAGGATTAAAATTTCTTTGCCCTCTGGAGATCAAGGAGAAGATCAAGATCATCATCAACGATCGAGATCAACAAGTTCATAAGGCCTAGCCAATCAAGATCATCAAGCTCGAGGTCGATCAAGTTCATCATCAAGCTAGAGGCCGATCAAGATCATCATCAAGCCAGAGGCCGATCAAGATCATCATCAAGCCAGTGGCTAATCAAGATCATCATCAAGTCTGAGGCTTATCAAGACTATCATCAAGGTCGAGGCAGATCAAGATCATCATCAAGGTCGAGGTCGATCAAGATCATCATCAAGGTCGAGGCCGATCAAGATCATCATCAAGCTCGAGGCCGATCAAGATCATCATCAAGGTCGAGGCTAATCAAGATCATCATCAAGCTCGAGGCTGATCAAGATCATCATTGTCATCGTCAAGCTAGAGGCCGATCAAGATCATCGTCAAGCTAG

mRNA sequence

ATGGGAAAGAGCAACAAGGAGAAAGTGCCACATCATCATCAAGCTAGAGGCCGATCAAGATCATCAGTAAGCCAGAGGCTGAGCAAGATCATCATCAAGTTCGAGGCCGATCAAGATCATCATCAAGTCCGAGGCCGAGGCCAATCAAGATTATCATCAAGTCCGAGGCCGAGGCCAATCAAGATTATCATCAAGTCCGAGGCCGAGGCCAATCAAGATTATCATCAAGTCCGAGGCCGAGGCCAATCAAGATTATCATCAAGTCCGAGGCCAATCAAGATCATCATCGAGCCTGAGGTGATCACCACTATTGAAGTAGGCGGACAAATGATCCTTGCCAAGGATAGACAATGGAACCGTCAAATTTTGACTGATCCACGTCACAATCTCATAAATGAAAAATTCAATTATTTTCGGAGAAGATCAAGATCATCATCAACGATCGAGATCAACAAGTTCATAAGGCCTAGCCAATCAAGATCATCAAGCTCGAGGTCGATCAAGTTCATCATCAAGCTAGAGGCCGATCAAGATCATCATCAAGCCAGAGGCCGATCAAGATCATCATCAAGCCAGTGGCTAATCAAGATCATCATCAAGTCTGAGGCTTATCAAGACTATCATCAAGGTCGAGGCAGATCAAGATCATCATCAAGGTCGAGGTCGATCAAGATCATCATCAAGGTCGAGGCCGATCAAGATCATCATCAAGCTCGAGGCCGATCAAGATCATCATCAAGGTCGAGGCTAATCAAGATCATCATCAAGCTCGAGGCTGATCAAGATCATCATTGTCATCGTCAAGCTAGAGGCCGATCAAGATCATCGTCAAGCTAG

Coding sequence (CDS)

ATGGGAAAGAGCAACAAGGAGAAAGTGCCACATCATCATCAAGCTAGAGGCCGATCAAGATCATCAGTAAGCCAGAGGCTGAGCAAGATCATCATCAAGTTCGAGGCCGATCAAGATCATCATCAAGTCCGAGGCCGAGGCCAATCAAGATTATCATCAAGTCCGAGGCCGAGGCCAATCAAGATTATCATCAAGTCCGAGGCCGAGGCCAATCAAGATTATCATCAAGTCCGAGGCCGAGGCCAATCAAGATTATCATCAAGTCCGAGGCCAATCAAGATCATCATCGAGCCTGAGGTGATCACCACTATTGAAGTAGGCGGACAAATGATCCTTGCCAAGGATAGACAATGGAACCGTCAAATTTTGACTGATCCACGTCACAATCTCATAAATGAAAAATTCAATTATTTTCGGAGAAGATCAAGATCATCATCAACGATCGAGATCAACAAGTTCATAAGGCCTAGCCAATCAAGATCATCAAGCTCGAGGTCGATCAAGTTCATCATCAAGCTAGAGGCCGATCAAGATCATCATCAAGCCAGAGGCCGATCAAGATCATCATCAAGCCAGTGGCTAATCAAGATCATCATCAAGTCTGAGGCTTATCAAGACTATCATCAAGGTCGAGGCAGATCAAGATCATCATCAAGGTCGAGGTCGATCAAGATCATCATCAAGGTCGAGGCCGATCAAGATCATCATCAAGCTCGAGGCCGATCAAGATCATCATCAAGGTCGAGGCTAATCAAGATCATCATCAAGCTCGAGGCTGATCAAGATCATCATTGTCATCGTCAAGCTAGAGGCCGATCAAGATCATCGTCAAGCTAG

Protein sequence

MGKSNKEKVPHHHQARGRSRSSVSQRLSKIIIKFEADQDHHQVRGRGQSRLSSSPRPRPIKIIIKSEAEANQDYHQVRGRGQSRLSSSPRPIKIIIEPEVITTIEVGGQMILAKDRQWNRQILTDPRHNLINEKFNYFRRRSRSSSTIEINKFIRPSQSRSSSSRSIKFIIKLEADQDHHQARGRSRSSSSQWLIKIIIKSEAYQDYHQGRGRSRSSSRSRSIKIIIKVEADQDHHQARGRSRSSSRSRLIKIIIKLEADQDHHCHRQARGRSRSSSS
Homology
[Close]
BLAST of MC09g_new0230 vs. NCBI nr
Match: KAF2358851.1 (hypothetical protein FHG87_010393 [Trinorchestia longiramus])

HSP 1 Score: 53.1 bits (126), Expect = 2.10e-04
Identity = 41/110 (37.27%), Postives = 50/110 (45.45%), Query Frame = 0 

Query: 159 SRSSSSRSIKFIIKLEADQDHHQARGRSRSSSSQWLIKIIIKSEAYQDYHQGRGRSRSSS 218
           S SSSS S   I+ +  D  HH     S S     +I III    ++ +HQG     SS 
Sbjct: 78  SSSSSSSSSGIIVIIIRDHHHHHQGSSSSSGIIIIIIIIIIIIRDHRHHHQGSSSPSSSG 137

Query: 219 RSRSIKIIIKVEADQDHHQARGRSRSSSRSRLIKIIIKLEADQDHHCHRQ 268
                 III +  D  HH  +G S SSS S    III +  D  HH H Q
Sbjct: 138 ------IIIIIIRDHHHHHHQGSSSSSSSSSSGIIIIIIIRDHHHHHHHQ 181

[Close]
BLAST of MC09g_new0230 vs. NCBI nr
Match: XP_019057580.1 (PREDICTED: serine/arginine repetitive matrix protein 2 isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 53.5 bits (127), Expect = 6.94e-04
Identity = 46/127 (36.22%), Postives = 62/127 (48.82%), Query Frame = 0 

Query: 155 RPSQSRSSSSRSIKFIIKLEADQDHHQARGRSRSSSSQWLIKIIIKSEAYQDYHQGRGRS 214
           R S+SRSS  ++IK  I    D    + R RSRS SS+ +I    K++A QD      R 
Sbjct: 685 RRSRSRSSEGQNIKKSISPNPDDTKQKHRRRSRSRSSENIIGSDEKNDAAQDGDSRSHRR 744

Query: 215 RSSSRSRSIKIIIKVE------ADQDHHQARGRSRSSSRSRLIKIIIKLEADQDHHCHRQ 274
           R  S+S      +K E       D    + RGRSRS S    I    K+E+D+DH    +
Sbjct: 745 RCRSKSLDDDYNMKKERTSSRKTDDAKQKRRGRSRSRSLENKIGSHEKIESDRDHSRTHR 804

[Close]
BLAST of MC09g_new0230 vs. NCBI nr
Match: XP_010532762.1 (PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1 [Tarenaya hassleriana] >XP_019057577.1 PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1 [Tarenaya hassleriana] >XP_019057578.1 PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1 [Tarenaya hassleriana] >XP_019057579.1 PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 53.5 bits (127), Expect = 6.94e-04
Identity = 46/127 (36.22%), Postives = 62/127 (48.82%), Query Frame = 0 

Query: 155 RPSQSRSSSSRSIKFIIKLEADQDHHQARGRSRSSSSQWLIKIIIKSEAYQDYHQGRGRS 214
           R S+SRSS  ++IK  I    D    + R RSRS SS+ +I    K++A QD      R 
Sbjct: 688 RRSRSRSSEGQNIKKSISPNPDDTKQKHRRRSRSRSSENIIGSDEKNDAAQDGDSRSHRR 747

Query: 215 RSSSRSRSIKIIIKVE------ADQDHHQARGRSRSSSRSRLIKIIIKLEADQDHHCHRQ 274
           R  S+S      +K E       D    + RGRSRS S    I    K+E+D+DH    +
Sbjct: 748 RCRSKSLDDDYNMKKERTSSRKTDDAKQKRRGRSRSRSLENKIGSHEKIESDRDHSRTHR 807

[Close]
BLAST of MC09g_new0230 vs. ExPASy TrEMBL
Match: A0A2J6L667 (RRM domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_1X73301 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.11e-04
Identity = 57/267 (21.35%), Postives = 114/267 (42.70%), Query Frame = 0 

Query: 14  QARGRSRSSVSQRLSKIIIKFEADQDHHQVRGRGQSRLSSSPRPRPIKIIIKSEAEANQD 73
           +++GR       R + +  K  +D+   + +GR + R  S  R   +++  +S  + + D
Sbjct: 694 KSKGRDGRRSRSRSASLEFKHRSDEKVERSKGRDKRRSRSRSRSASLEVKHRSNDKMD-D 753

Query: 74  YHQVRGRGQSRLSSSPRPIKIIIEPEVITTIEVGGQMILAKDRQWNRQILTDPRHNLINE 133
             + R +G+ +  S  R   + ++      +E   +    +DR+ +R    + +    + 
Sbjct: 754 RKEERSKGRDKRRSRSRSASLEVKTRSNNKMEERSK---GRDRKRSRSASLEVKRRSNDS 813

Query: 134 KFNYFRRRSRSSSTIEINKFIRPSQSRSSSSRSIKFIIKLEADQDHHQARGRSRSSSSQW 193
           K    + R R                R S SRS    +K +  ++  + RGR RS S   
Sbjct: 814 KEEKSKGRDR----------------RRSRSRSASVEVKHDIKEERSKGRGRRRSRSRSA 873

Query: 194 LIKIIIKS-EAYQDYHQGRGRSRSSSRSRSIKIIIKVEADQ---DHHQARGRSRSSSRSR 253
            +++  +S +   +  + R + R  SRSRS  + +K  ++    D  + R +     RSR
Sbjct: 874 SLEVKHRSNDKVNENREVRSKHRRRSRSRSASVEVKHRSNDKIDDSKEERSKRHERRRSR 933

Query: 254 LIKIIIKLEAD-QDHHCHRQARGRSRS 275
              + +K  ++ ++    R  RGRSRS
Sbjct: 934 SASVEVKHRSNNREEKSKRHDRGRSRS 940

The following BLAST results are available for this feature:
BLAST of MC09g_new0230 vs.
Match NameE-valueIdentityDescription
BLAST of MC09g_new0230 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF2358851.12.10e-0437.27hypothetical protein FHG87_010393 [Trinorchestia longiramus][more]
XP_019057580.16.94e-0436.22PREDICTED: serine/arginine repetitive matrix protein 2 isoform X2 [Tarenaya hass... [more]
XP_010532762.16.94e-0436.22PREDICTED: serine/arginine repetitive matrix protein 2 isoform X1 [Tarenaya hass... [more]
BLAST of MC09g_new0230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2J6L6676.11e-0421.35RRM domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_1X73301 PE=4 SV=... [more]
BLAST of MC09g_new0230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g_new0230.1MC09g_new0230.1mRNA