MC09g_new0171 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g_new0171
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationMC09: 8227623 .. 8229658 (+)
RNA-Seq ExpressionMC09g_new0171
SyntenyMC09g_new0171
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATAACTCATCATTTCTCCACCAACTCCTGTCAATCGTGACTACTCCTATCACCGATCCACCGCCACCGTCTACTCCTGAATCTTCTTCAGATTTGAATCCGTCTTCTACTCCAGATGCGTCTTCTCATAGTCCGTATTATTTTCATCACAATGACACTGCCATTCTTGTTCTTGTTACAGAACTCCATACTGATGAAAACTACATTTCTTGGAGTCGTTCTATGCTGATCGCTCTTTCTATCAAGAATAAACTTGGTTTATTGATGGCACACTTCAGAAACCTACTGGTGATCTTTTGCCTTCGTGGATTCTGAATACTCACGTTGTGATTGCATGGATTTTGAACTCTGTTTCAAAATCCATCTCTGTTAGCCTCATTTTTTCTGATTCGACGCGCGATACATGGGTTGATCTGAAGGAACGTTTTCAGTGTAAGAACGGTCCTCGAATTTTCCAACTCAAGCGCGATTTAGCCACAATCAATCAAGATCAGCTTTCTGTTTCCATGTATTTCACACGATTGAAGAACATTTGGGATGAATACGCTACTTATCGACAAAGTTGTTCTTGTGGTAAATGCTCCTGTGGCGGTGTTAAATTGATCCAGGAATTCTTTCAGTTTGAGTATTTGATGAGTTTCCCCATGGGTCTGAATGAATCTTTTTCAGCTACACGCGCTCAAATTTACTCATGAATTCTTCTCCAACAATTAACAAGGCGTTTTCTCTTCTCTCTCAGGAGGAACAACAGCGGTCCATTCCTCTTTTTCCGACGCTTCTCCGGCTCTTTCTCTTGCCGTTGGCCAATCTTCTCGTGCTGCTTCATCTACTTCATAGCCTCCTGTTACTCGATCGAGAAAGCCTCGTTCTATTTGCACGCATTGTGGTCTCTTAGGCCACACCATTGATGGATGCTACAAGTTACACGGATATCCCCCTGGATACCGCAAATGAGGTAATCAACGTACCACTTCTATGGTTCAGAGTACTGGTTCTTCTATGAATCTCAACACTACTCCTATGAATCAACCTGGCTTACAGTCAAATTCTGTCTCGGCATATACTGTGCATGCTAATGTTGTTCAGTCACCATCTTCTTCGAATTTGGTTTCTCCTAGAACGTCTAATGTTTTTGCTCAATGTCACAGTATGTTGCATCAATTGCAATCACAGTTTGCTGCTACAAAGACTAATTCTCCAAATTCTAGCTCCTCTTATATCGCAGGTACTTGCCCTAACATACACTTACCCACATCTTGTACTCATCGCTGGATTTTTGATTCTGGAGCATCAACACATATTTGTTTTTCTCGAGAATTGTTTCAATCTTTGTATCTGGTTTCAATTGCTGTGATTTTGCCTGATGGAACTCAGTTGCCTGTATCTTCTGCTGGGACTGTTATGCGTTTTAGATCTGTTATTCTAAAACATGTTCTTTATGTTCCTTAATTTTGTTACAATTTGCTTTCCATCAGTGCTCTCACCACGGATGCTTCTTTTGTTGTTCAGTTCTCTACTGATTTTTGTGATATTTAGGAAAGGTCCATTTTGAGGACAATTGGCAGGGGTAAGAATTATGATGGCCTTTATCTGCTTGAGATGCCTGCTACGGTTGCTGTCCAACCTTCTGTCTCGGTTCATGCTGTCATGGCTCGTGCATCCAGTGCTTTATGGCATTCCAGGCGTAGACATCCCTCTCACTCTCGTTTACATGCATCGAAGTCTGTGTTACCTTTTGTTGACTCTGATGTTTCACATGACCATTCTTGTGATATTTGTCCTCTTGCTAAACAGAAGAGGTTATCATTTAGTTCTAATAATCGTTTGTCAGCTACTGCTTTTGATCTTGTTCATGCTTTGGGGCCCCTTTGCTACCCCTTCTTATTCTAGTTATAAGTACTTTCTTACAATGGTTGATGATTGTACCATATACACTTGGGTTTATATGTTGCGGAGAAAATCTGATGTTTTGACTATTATACCACAGTTTTTTAAGTTGGTAGAGACTCAATATCATAAGCATGTTAAAGTCTTT

mRNA sequence

ATGCTACAAGTTACACGGATATCCCCCTGGATACCGCAAATGAGTATGTTGCATCAATTGCAATCACAGTTTGCTGCTACAAAGACTAATTCTCCAAATTCTAGCTCCTCTTATATCGCAGGTACTTGCCCTAACATACACTTACCCACATCTTGTACTCATCGCTGGATTTTTGATTCTGGAGCATCAACACATATTTGTTTTTCTCGAGAATTGTTTCAATCTTTGTATCTGGTTTCAATTGCTGTGATTTTGCCTGATGGAACTCAGTTGCCTGTATCTTCTGCTGGGACTGTTATGCGTTTTAGATCTGTTATTCTAAAACATGTTCTTTATGTTCCTTAA

Coding sequence (CDS)

ATGCTACAAGTTACACGGATATCCCCCTGGATACCGCAAATGAGTATGTTGCATCAATTGCAATCACAGTTTGCTGCTACAAAGACTAATTCTCCAAATTCTAGCTCCTCTTATATCGCAGGTACTTGCCCTAACATACACTTACCCACATCTTGTACTCATCGCTGGATTTTTGATTCTGGAGCATCAACACATATTTGTTTTTCTCGAGAATTGTTTCAATCTTTGTATCTGGTTTCAATTGCTGTGATTTTGCCTGATGGAACTCAGTTGCCTGTATCTTCTGCTGGGACTGTTATGCGTTTTAGATCTGTTATTCTAAAACATGTTCTTTATGTTCCTTAA

Protein sequence

MLQVTRISPWIPQMSMLHQLQSQFAATKTNSPNSSSSYIAGTCPNIHLPTSCTHRWIFDSGASTHICFSRELFQSLYLVSIAVILPDGTQLPVSSAGTVMRFRSVILKHVLYVP
Homology
BLAST of MC09g_new0171 vs. NCBI nr
Match: XP_022856063.1 (uncharacterized protein LOC111377235, partial [Olea europaea var. sylvestris])

HSP 1 Score: 67.0 bits (162), Expect = 4.00e-10
Identity = 39/104 (37.50%), Postives = 64/104 (61.54%), Query Frame = 0

Query: 16  MLHQLQSQFAATKTNSPNSS-SSYIAGTCPNIHLPTSCTH---RWIFDSGASTHICFSRE 75
           +++ L +   + KTN+ N   ++ ++GTC +I L   C +    W+ DSGA++HICFS+ 
Sbjct: 296 LMNMLGNHLTSAKTNTRNDEHTNQVSGTCFSIVL-NPCLNSPKHWVMDSGATSHICFSKS 355

Query: 76  LFQSLYLVSIA-VILPDGTQLPVSSAGTVMRFRSVILKHVLYVP 114
            F S+ L+  A V LP+  ++PVS  G V    +++L+ VLYVP
Sbjct: 356 AFYSMKLIENAYVTLPNHKRIPVSFVGIVKFSNNLMLEDVLYVP 398

BLAST of MC09g_new0171 vs. NCBI nr
Match: KZV26776.1 (hypothetical protein F511_28693 [Dorcoceras hygrometricum])

HSP 1 Score: 66.6 bits (161), Expect = 5.13e-10
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 0

Query: 19  QLQSQFAATKTNSPNSSSSYIAGTCP-NIHLPTSCTHRWIFDSGASTHICFSRELFQSLY 78
           +LQ++        P ++ S + G C    H+P      WI D+GA+ HIC S  +F S  
Sbjct: 293 KLQTRQNLPMERQPETTVSCLTGICSATSHIPNITKRNWIMDTGATHHICCSLSMFNSSR 352

Query: 79  LVSIAVILPDGTQLPVSSAGTVMRFRSVILKHVLYVP 114
            +   V+LP+   +PV+ AG+V     +ILK+VLYVP
Sbjct: 353 AIQSKVVLPNAITIPVTIAGSVAVTSDLILKNVLYVP 389

BLAST of MC09g_new0171 vs. NCBI nr
Match: KZV47147.1 (hypothetical protein F511_16989 [Dorcoceras hygrometricum])

HSP 1 Score: 65.5 bits (158), Expect = 1.38e-09
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 19  QLQSQFAATKTNSPNSSSSYIAGTCP-NIHLPTSCTHRWIFDSGASTHICFSRELFQSLY 78
           +LQ++      + P ++ S + G C    H+P      WI D+GA+ HIC S  +F+S  
Sbjct: 352 KLQTRQNLLMEHQPETTVSCLTGICSATSHIPAITRKDWIMDTGATHHICCSLSMFKSSR 411

Query: 79  LVSIAVILPDGTQLPVSSAGTVMRFRSVILKHVLYVP 114
            +   V+LP+   +PV+ AGTV    +++L++VLYVP
Sbjct: 412 AIQSKVVLPNTLTIPVTIAGTVAVTSNLVLQNVLYVP 448

BLAST of MC09g_new0171 vs. NCBI nr
Match: KZV25004.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Dorcoceras hygrometricum])

HSP 1 Score: 65.5 bits (158), Expect = 1.48e-09
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 19  QLQSQFAATKTNSPNSSSSYIAGTCP-NIHLPTSCTHRWIFDSGASTHICFSRELFQSLY 78
           +LQ++      + P ++ S + G C    H+P      WI D+GA+ HIC S  +F+S  
Sbjct: 352 KLQTRQNLLMEHQPETTVSCLTGICSATSHIPAITRKDWIMDTGATHHICCSLSMFKSSR 411

Query: 79  LVSIAVILPDGTQLPVSSAGTVMRFRSVILKHVLYVP 114
            +   V+LP+   +PV+ AGTV    +++L++VLYVP
Sbjct: 412 AIQSKVVLPNTLTIPVTIAGTVAVTSNLVLQNVLYVP 448

BLAST of MC09g_new0171 vs. NCBI nr
Match: KAG7587171.1 (Integrase catalytic core [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 62.8 bits (151), Expect = 1.31e-08
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 56  WIFDSGASTHICFSRELFQSLYLVS-IAVILPDGTQLPVSSAGTVMRFRSVILKHVLYVP 114
           WI DSGA++H+C     F+ ++LVS I V LP+GT LP+   GT+    S+IL +VL+VP
Sbjct: 476 WIIDSGATSHVCCDLSKFKEIFLVSGITVALPNGTSLPIHHTGTIQLSESLILYNVLHVP 535

BLAST of MC09g_new0171 vs. ExPASy TrEMBL
Match: A0A2Z7AZJ6 (Retrotrans_gag domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_28693 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.48e-10
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 0

Query: 19  QLQSQFAATKTNSPNSSSSYIAGTCP-NIHLPTSCTHRWIFDSGASTHICFSRELFQSLY 78
           +LQ++        P ++ S + G C    H+P      WI D+GA+ HIC S  +F S  
Sbjct: 293 KLQTRQNLPMERQPETTVSCLTGICSATSHIPNITKRNWIMDTGATHHICCSLSMFNSSR 352

Query: 79  LVSIAVILPDGTQLPVSSAGTVMRFRSVILKHVLYVP 114
            +   V+LP+   +PV+ AG+V     +ILK+VLYVP
Sbjct: 353 AIQSKVVLPNAITIPVTIAGSVAVTSDLILKNVLYVP 389

BLAST of MC09g_new0171 vs. ExPASy TrEMBL
Match: A0A2Z7CMI0 (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_16989 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.66e-10
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 19  QLQSQFAATKTNSPNSSSSYIAGTCP-NIHLPTSCTHRWIFDSGASTHICFSRELFQSLY 78
           +LQ++      + P ++ S + G C    H+P      WI D+GA+ HIC S  +F+S  
Sbjct: 352 KLQTRQNLLMEHQPETTVSCLTGICSATSHIPAITRKDWIMDTGATHHICCSLSMFKSSR 411

Query: 79  LVSIAVILPDGTQLPVSSAGTVMRFRSVILKHVLYVP 114
            +   V+LP+   +PV+ AGTV    +++L++VLYVP
Sbjct: 412 AIQSKVVLPNTLTIPVTIAGTVAVTSNLVLQNVLYVP 448

BLAST of MC09g_new0171 vs. ExPASy TrEMBL
Match: A0A2Z7AT15 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Dorcoceras hygrometricum OX=472368 GN=F511_01974 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.16e-10
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 19  QLQSQFAATKTNSPNSSSSYIAGTCP-NIHLPTSCTHRWIFDSGASTHICFSRELFQSLY 78
           +LQ++      + P ++ S + G C    H+P      WI D+GA+ HIC S  +F+S  
Sbjct: 352 KLQTRQNLLMEHQPETTVSCLTGICSATSHIPAITRKDWIMDTGATHHICCSLSMFKSSR 411

Query: 79  LVSIAVILPDGTQLPVSSAGTVMRFRSVILKHVLYVP 114
            +   V+LP+   +PV+ AGTV    +++L++VLYVP
Sbjct: 412 AIQSKVVLPNTLTIPVTIAGTVAVTSNLVLQNVLYVP 448

BLAST of MC09g_new0171 vs. ExPASy TrEMBL
Match: A0A151S098 (gag_pre-integrs domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_030106 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.74e-08
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 0

Query: 33  NSSSSYIAGTCPNIHLPTSCTHRWIFDSGASTHICFSRELFQSLYLVSIA-VILPDGTQL 92
           N +S  I  T  +     +C   W+ DSGA+ HICFS++ F  L  +  + V LP+G+++
Sbjct: 9   NPTSGIILSTIKSSFSSPTC---WLLDSGATNHICFSKQSFHDLTTIKNSFVTLPNGSRI 68

Query: 93  PVSSAGTVMRFRSVILKHVLYVP 114
           P+   G+V  F  +IL +V Y+P
Sbjct: 69  PIEGIGSVYLFPKLILTNVFYIP 88

BLAST of MC09g_new0171 vs. ExPASy TrEMBL
Match: A0A6J0KZV9 (uncharacterized protein LOC108824502 OS=Raphanus sativus OX=3726 GN=LOC108824502 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.08e-08
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 47  HLPTSCTHRWIFDSGASTHICFSRELFQSLYLVS-IAVILPDGTQLPVSSAGTVMRFRSV 106
           HLP      WI DSGA+TH+C+   LF S+  V+ + V LP+GT+ P++  GTV    S+
Sbjct: 442 HLPMG---SWIIDSGATTHVCYDLTLFSSVTTVAWVTVSLPNGTREPITHTGTVHLSDSL 501

Query: 107 ILKHVLYVP 114
           IL  VL+VP
Sbjct: 502 ILHDVLHVP 507

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022856063.14.00e-1037.50uncharacterized protein LOC111377235, partial [Olea europaea var. sylvestris][more]
KZV26776.15.13e-1036.08hypothetical protein F511_28693 [Dorcoceras hygrometricum][more]
KZV47147.11.38e-0935.05hypothetical protein F511_16989 [Dorcoceras hygrometricum][more]
KZV25004.11.48e-0935.05Cysteine-rich RLK (receptor-like protein kinase) 8 [Dorcoceras hygrometricum][more]
KAG7587171.11.31e-0848.33Integrase catalytic core [Arabidopsis thaliana x Arabidopsis arenosa][more]
Match NameE-valueIdentityDescription
A0A2Z7AZJ62.48e-1036.08Retrotrans_gag domain-containing protein OS=Dorcoceras hygrometricum OX=472368 G... [more]
A0A2Z7CMI06.66e-1035.05Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_16989 PE=4... [more]
A0A2Z7AT157.16e-1035.05Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Dorcoceras hygrometricum O... [more]
A0A151S0981.74e-0836.14gag_pre-integrs domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_030106... [more]
A0A6J0KZV92.08e-0846.38uncharacterized protein LOC108824502 OS=Raphanus sativus OX=3726 GN=LOC108824502... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g_new0171.1MC09g_new0171.1mRNA