MC09g_new0162 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g_new0162
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC09: 7654911 .. 7655977 (+)
RNA-Seq Expression	MC09g_new0162
Synteny	MC09g_new0162

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTATTTTATTTTTAATTTCAAACAAATAACAACATATTTCTAACGGTACACAAACCTACACAAACTTTTAAAAAAATATATATATGAAAAGAAAAAATCGAAAATTATAAAATCCCCAAAATAATTTCCCTTTTCTTGCTTTAAAACTGGTCACCATTTTCTTCAGTTCTTCCGATTGAAGCCGTCCCCTTCCGATTGCAGAAGCTCCTCCAAGAGCTCATTATCCAAATACTCAAACTCGATCACTTCGTCCGGTCGCCGGCAGGCATTGTTCGCGGAGTAATTTCCGGCGAAAGAGATCGAAGAAGACGCCGCCGCCGTAGCAGAGGAGCCAAACGCCGCCGCTAAATTAGGGTTTCCACTTTGGTACTCATTCGGAAAATTCAGAATCGCCAAATGCCCTCGGAATGCGTACGCCGCTTGATCGTACGCCCTCGCCGCCTCCTCCGCCGTGTCGAACGTCCCCAGCCAGAGCCGAGCGCCGTTCCGCGACGGATCTCGAATCTCCGCCGCGAATTTCCCCCACGGCCGCCGCCGAATCCCCCGGTAACGAGCTTCGTTCGACGATCTCCTCCCTAATTCGTTCCCTGCCGTCCTCTTTCCTTCCATTTTTCTAGGTTCTGTTTTTAATCGCACTGTGAAATTTTCTGAAAACAGAGCGCTGTGGAACAGGGGAAGGATTTAGGGCTTTTTGTTATCTCGTCTTGGATTTCAAAAATTGGAGGCAAAATCTGGAGAACGGCGAACCAGGTAATGAAATCTGTTGAATTTATATGGAAATTTGGAAGATTAAAAACTGAGTCAGCCATGTTTGAAGGTTGAACTATTGTCGCATTTGGTGGGGGAAACTTCTGGGAAGATGAAGGAAACAGAGGAAATTTTGTTCGTCGAAAATTAAATGGATTTGATTTGATTTAAGCCGTCAGAGATGAACTCTGCAAGAGGACTGGAACTTTTGTTTTTACTTTCTGGTTAAATTAATCTTTTTAATTATTTTTGTCATTCATATTTGTGACAGAACTATTTTATTTTTTGGGTTCTATTTATATATAGATAATATTTTCC

mRNA sequence

ATGCCCTCGGAATGCGTACGCCGCTTGATCGTACGCCCTCGCCGCCTCCTCCGCCGTGTCGAACGTCCCCAGCCAGAGCCGAGCGCCGTTCCGCGACGGATCTCGAATCTCCGCCGCGAATTTCCCCCACGGCCGCCGCCGAATCCCCCGAGCGCTGTGGAACAGGGGAAGGATTTAGGGCTTTTTGTTATCTCGTCTTGGATTTCAAAAATTGGAGGCAAAATCTGGAGAACGGCGAACCAGGTTGAACTATTGTCGCATTTGGTGGGGGAAACTTCTGGGAAGATGAAGGAAACAGAGGAAATTTTGTTCGTCGAAAATTAA

Coding sequence (CDS)

ATGCCCTCGGAATGCGTACGCCGCTTGATCGTACGCCCTCGCCGCCTCCTCCGCCGTGTCGAACGTCCCCAGCCAGAGCCGAGCGCCGTTCCGCGACGGATCTCGAATCTCCGCCGCGAATTTCCCCCACGGCCGCCGCCGAATCCCCCGAGCGCTGTGGAACAGGGGAAGGATTTAGGGCTTTTTGTTATCTCGTCTTGGATTTCAAAAATTGGAGGCAAAATCTGGAGAACGGCGAACCAGGTTGAACTATTGTCGCATTTGGTGGGGGAAACTTCTGGGAAGATGAAGGAAACAGAGGAAATTTTGTTCGTCGAAAATTAA

Protein sequence

MPSECVRRLIVRPRRLLRRVERPQPEPSAVPRRISNLRREFPPRPPPNPPSAVEQGKDLGLFVISSWISKIGGKIWRTANQVELLSHLVGETSGKMKETEEILFVEN

Homology

[Close]

BLAST of MC09g_new0162 vs. NCBI nr
Match: GER50826.1 (calcium/calmodulin-dependent protein kinase typeII subunit delta [Striga asiatica])

HSP 1 Score: 50.8 bits (120), Expect = 1.05e-04
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 10  IVRPRRLLRRVERPQPEPSAVPRRISNLRREFPPRPPPNPPSAVEQGKDLGLFVISSW 67
           IVRPR +  RV  PQP+P+ +P R+++ RR F PRPPPNPP + + GK       S W
Sbjct: 137 IVRPRGIQIRVVSPQPDPTTLPGRVADFRRVFAPRPPPNPPESPD-GKTNWAHGCSLW 193

[Close]

BLAST of MC09g_new0162 vs. ExPASy TrEMBL
Match: A0A5A7R0F2 (Calcium/calmodulin-dependent protein kinase typeII subunit delta OS=Striga asiatica OX=4170 GN=STAS_28152 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.08e-05
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 10  IVRPRRLLRRVERPQPEPSAVPRRISNLRREFPPRPPPNPPSAVEQGKDLGLFVISSW 67
           IVRPR +  RV  PQP+P+ +P R+++ RR F PRPPPNPP + + GK       S W
Sbjct: 137 IVRPRGIQIRVVSPQPDPTTLPGRVADFRRVFAPRPPPNPPESPD-GKTNWAHGCSLW 193

The following BLAST results are available for this feature:

BLAST of MC09g_new0162 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g_new0162 vs. NCBI nr


Match Name	E-value	Identity	Description
GER50826.1	1.05e-04	48.28	calcium/calmodulin-dependent protein kinase typeII subunit delta [Striga asiatic...	[more]

BLAST of MC09g_new0162 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7R0F2	5.08e-05	48.28	Calcium/calmodulin-dependent protein kinase typeII subunit delta OS=Striga asiat...	[more]

BLAST of MC09g_new0162 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g_new0162.1	MC09g_new0162.1	mRNA