MC09g_new0153 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g_new0153
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionSWIM-type domain-containing protein
LocationMC09: 6413942 .. 6415227 (-)
RNA-Seq ExpressionMC09g_new0153
SyntenyMC09g_new0153
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTATCAGTTGAAGACTTTTGTTGGTGAACACTCGTGTAGTAGGTCCTTCAGCAATCCACGCCTAACATCTAGGTGGCTAAGTAGGCAAATTGTAAATGATGTAAAGGAACAATCAAATATGAGATTGAGAGCCATCCAAGAGAAGGTACAACGTAAGTACATTTCACAAATTAATAAAGTGGAAGCTTTTAGAGCAAAGAAATTGGCTTTAGATATAGTTGTTTTAGAGCAAATTGTAAATGATGTAAAGGAACAATCAAATATGATTATGCTGTTATTTTCAGGGTTTAGTGCCAACCTTCAGTGAATTAATTCCAGAATCAGAACATCGCTTTTGTGTGAGACACATCTATAGCAACATGAGAAAGAGGTTTCCTGGAATGCAGTTGAGAAAGCTTTTTTGGTGAGCAACCAACACAACTTATTATCAGCAATGGGAGAGGGAGATGCAAGAAATAAAAAAGGTAGATGAAGGTGCATACAAGTGGGTGTTGGCCTTACCTCGTGAGAAATGGAGTAAGCATGCCTTTAGTTGCGGGTCTAAGTGTGATTCTGTGGTTAATAATCCATGTGAGGTATTTAATGCTACTATACTTGAATCTAGAGACCAACCAATTATTTCTTTACGTGAATGGATTAGAACTTATCTAATGAGAAGATTTCAAAAAAAAAAAAAAATAGACAGATGATTGAAAAGTTTGATTGGGAGGTGTGTCCCAAAATTAAAAAGAAGATCGAGGAGGAGAAACTACATTGTAGGAATGGGTTACCTATGTGGGCTGGTGACTTGAAATTTGAGGTTAGAAATGGTTGTGACAAGTTCGTTGTAGACCTTGATTCAAAAACTTGTAGTTGTAGGAAATGGGACCTAATTGGGTTCCCATGTCAACATGCCATTAGTTGTATTTTCTATAAAGGGCATAATGTTGAGACATATGTTGATGATTGCTATAAAAAGAAGGCTTACATTGCATGCTACGAGCCTCTTGTTTACCCAACCAAAGGTCTAAACTTATGACCAAGTACAAATTTCAATGTCATTAGTCCACCACATCTTAGAAGAGCTCCCGGTAGGCCAAATAGTTGTTTATAAATTTCTAGCTGTACGAGAAACTGATTTGTTTTGTGATGGTACTAAGATTTTGTAAATGAGTATTTTTGTAATGACAAGTTTGTAATGACAAGTTTGTAATGACAGGTGGGGAGATTTTTTGTTTTGTAATGACTAGATGTGAATTTTTTTGTAATGACTGTATTAGATATTTTTGTGTCACATCATTTGAAC

mRNA sequence

ATGATTGAAAAGTTTGATTGGGAGGTGTGTCCCAAAATTAAAAAGAAGATCGAGGAGGAGAAACTACATTGTAGGAATGGGTTACCTATGTGGGCTGGTGACTTGAAATTTGAGGTTAGAAATGGTTGTGACAAGTTCGTTGTAGACCTTGATTCAAAAACTTGTAGTTGTAGGAAATGGGACCTAATTGGGTTCCCATGTCAACATGCCATTAGTTGTATTTTCTATAAAGGGCATAATGTTGAGACATATGTTGATGATTGCTATAAAAAGAAGGCTTACATTGCATGCTACGAGCCTCTTGTTTACCCAACCAAAGGTCTAAACTTATGA

Coding sequence (CDS)

ATGATTGAAAAGTTTGATTGGGAGGTGTGTCCCAAAATTAAAAAGAAGATCGAGGAGGAGAAACTACATTGTAGGAATGGGTTACCTATGTGGGCTGGTGACTTGAAATTTGAGGTTAGAAATGGTTGTGACAAGTTCGTTGTAGACCTTGATTCAAAAACTTGTAGTTGTAGGAAATGGGACCTAATTGGGTTCCCATGTCAACATGCCATTAGTTGTATTTTCTATAAAGGGCATAATGTTGAGACATATGTTGATGATTGCTATAAAAAGAAGGCTTACATTGCATGCTACGAGCCTCTTGTTTACCCAACCAAAGGTCTAAACTTATGA

Protein sequence

MIEKFDWEVCPKIKKKIEEEKLHCRNGLPMWAGDLKFEVRNGCDKFVVDLDSKTCSCRKWDLIGFPCQHAISCIFYKGHNVETYVDDCYKKKAYIACYEPLVYPTKGLNL
Homology
BLAST of MC09g_new0153 vs. NCBI nr
Match: XP_023913521.1 (uncharacterized protein LOC112025090 [Quercus suber])

HSP 1 Score: 145 bits (366), Expect = 1.80e-40
Identity = 60/110 (54.55%), Postives = 81/110 (73.64%), Query Frame = 0

Query: 1   MIEKFDWEVCPKIKKKIEEEKLHCRNGLPMWAGDLKFEVRNGCDKFVVDLDSKTCSCRKW 60
           MI K ++E+CPKI+K++ +EKL C   +  WAG  KFEV+NG + F+VDL+ K CSCRKW
Sbjct: 51  MIMKVEFELCPKIRKRLYKEKLACSKWIACWAGRTKFEVKNGLESFIVDLEEKKCSCRKW 110

Query: 61  DLIGFPCQHAISCIFYKGHNVETYVDDCYKKKAYIACYEPLVYPTKGLNL 110
           D++G PC HAISCIF+   +VE YV+ CYK+  YI CYEP++ P  G N+
Sbjct: 111 DILGMPCCHAISCIFFSREDVEKYVNACYKRTTYIDCYEPIIEPINGQNM 160

BLAST of MC09g_new0153 vs. NCBI nr
Match: XP_030936973.1 (uncharacterized protein LOC115962214 [Quercus lobata])

HSP 1 Score: 144 bits (363), Expect = 6.67e-40
Identity = 59/110 (53.64%), Postives = 80/110 (72.73%), Query Frame = 0

Query: 1   MIEKFDWEVCPKIKKKIEEEKLHCRNGLPMWAGDLKFEVRNGCDKFVVDLDSKTCSCRKW 60
           MI K + E+CPKI+K++ +EKL C   +  WAG +KFEV+NG + F+VDL+ K CSCRKW
Sbjct: 38  MITKVESELCPKIRKRLYKEKLACSKWITCWAGRMKFEVKNGLESFIVDLEEKKCSCRKW 97

Query: 61  DLIGFPCQHAISCIFYKGHNVETYVDDCYKKKAYIACYEPLVYPTKGLNL 110
           D++G PC HAISCIF+   + E YV+ CYK+  YI CYEP++ P  G N+
Sbjct: 98  DIVGIPCCHAISCIFFNREDAEKYVNACYKRTTYIDCYEPIIEPINGQNM 147

BLAST of MC09g_new0153 vs. NCBI nr
Match: XP_023885703.1 (uncharacterized protein LOC111997793 [Quercus suber])

HSP 1 Score: 145 bits (366), Expect = 2.24e-38
Identity = 61/110 (55.45%), Postives = 79/110 (71.82%), Query Frame = 0

Query: 1   MIEKFDWEVCPKIKKKIEEEKLHCRNGLPMWAGDLKFEVRNGCDKFVVDLDSKTCSCRKW 60
           MI K + E+CPKI+K++ +EKL C   L  W G  KFEV+NG + F+VDL+ K CSCRKW
Sbjct: 298 MIMKVESELCPKIRKRLHKEKLACSKWLACWVGRTKFEVKNGLESFIVDLEEKKCSCRKW 357

Query: 61  DLIGFPCQHAISCIFYKGHNVETYVDDCYKKKAYIACYEPLVYPTKGLNL 110
           D+IG PC HAISCIF+   +VE YV+ CYK+  YI CYEP++ P  G N+
Sbjct: 358 DIIGIPCYHAISCIFFNREDVEKYVNACYKRTTYIDCYEPIIEPINGQNM 407

BLAST of MC09g_new0153 vs. NCBI nr
Match: XP_030938481.1 (uncharacterized protein LOC115963572 [Quercus lobata])

HSP 1 Score: 140 bits (353), Expect = 1.52e-37
Identity = 59/110 (53.64%), Postives = 78/110 (70.91%), Query Frame = 0

Query: 1   MIEKFDWEVCPKIKKKIEEEKLHCRNGLPMWAGDLKFEVRNGCDKFVVDLDSKTCSCRKW 60
           MI K + E+CPKI+K++ +EKL     +  WAG +KFEV+NG + F+VDL  K CSCRKW
Sbjct: 123 MITKVESELCPKIRKRLYKEKLAYNKWIACWAGRMKFEVKNGLESFIVDLKEKKCSCRKW 182

Query: 61  DLIGFPCQHAISCIFYKGHNVETYVDDCYKKKAYIACYEPLVYPTKGLNL 110
           D++G PC HAISCIF+   + E YV+ CYKK  YI CYEP++ P  G N+
Sbjct: 183 DIVGIPCCHAISCIFFNREDAEKYVNACYKKTTYIDCYEPIIEPINGQNM 232

BLAST of MC09g_new0153 vs. NCBI nr
Match: XP_030923097.1 (uncharacterized protein LOC115949981 [Quercus lobata])

HSP 1 Score: 144 bits (363), Expect = 2.01e-37
Identity = 59/110 (53.64%), Postives = 80/110 (72.73%), Query Frame = 0

Query: 1   MIEKFDWEVCPKIKKKIEEEKLHCRNGLPMWAGDLKFEVRNGCDKFVVDLDSKTCSCRKW 60
           MI K + E+CPKI+K++ +EKL C   +  WAG +KFEV+NG + F+VDL+ K CSCRKW
Sbjct: 469 MIMKVESELCPKIRKRLYKEKLTCSKWIACWAGRMKFEVKNGLESFIVDLEEKKCSCRKW 528

Query: 61  DLIGFPCQHAISCIFYKGHNVETYVDDCYKKKAYIACYEPLVYPTKGLNL 110
           D++G PC HAISCIF+   + E YV+ CYK+  YI CYEP++ P  G N+
Sbjct: 529 DIVGIPCCHAISCIFFNREDAEKYVNTCYKRTTYIDCYEPIIEPINGQNM 578

BLAST of MC09g_new0153 vs. ExPASy TrEMBL
Match: A0A7N2RAY5 (SWIM-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 1.78e-37
Identity = 59/110 (53.64%), Postives = 80/110 (72.73%), Query Frame = 0

Query: 1   MIEKFDWEVCPKIKKKIEEEKLHCRNGLPMWAGDLKFEVRNGCDKFVVDLDSKTCSCRKW 60
           MI K + E+CPKI+K++ +EKL C   +  WAG +KFEV+NG + F+VDL+ K CSCRKW
Sbjct: 694 MIMKVESELCPKIRKRLYKEKLTCSKWIACWAGRMKFEVKNGLESFIVDLEEKKCSCRKW 753

Query: 61  DLIGFPCQHAISCIFYKGHNVETYVDDCYKKKAYIACYEPLVYPTKGLNL 110
           D++G PC HAISCIF+   + E YV+ CYK+  YI CYEP++ P  G N+
Sbjct: 754 DIVGIPCCHAISCIFFNREDAEKYVNACYKRTTYIDCYEPIIEPINGQNI 803

BLAST of MC09g_new0153 vs. ExPASy TrEMBL
Match: A0A445ANU1 (SWIM-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B01g052206 PE=4 SV=1)

HSP 1 Score: 123 bits (308), Expect = 2.43e-32
Identity = 53/109 (48.62%), Postives = 73/109 (66.97%), Query Frame = 0

Query: 2   IEKFDWEVCPKIKKKIEEEKLHCRNGLPMWAGDLKFEVRNGCDKFVVDLDSKTCSCRKWD 61
           I  +   + P I+KK+++     R+  P W  D K+EV  G DKFVVDL +  CSCRKW 
Sbjct: 113 IHTYQENIMPLIRKKLKKRASLARDWRPYWLADSKYEVMCGLDKFVVDLAAAECSCRKWQ 172

Query: 62  LIGFPCQHAISCIFYKGHNVETYVDDCYKKKAYIACYEPLVYPTKGLNL 110
           + G PC HAISCI +KG ++E+YVDDCYKK AY+ CY+ +++P  G +L
Sbjct: 173 MSGIPCPHAISCISFKGLDLESYVDDCYKKDAYLKCYQEVIHPVNGPDL 221

BLAST of MC09g_new0153 vs. ExPASy TrEMBL
Match: A0A445EUN9 (SWIM-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g003975 PE=4 SV=1)

HSP 1 Score: 121 bits (304), Expect = 1.22e-31
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 0

Query: 9   VCPKIKKKIEEEKLHCRNGLPMWAGDLKFEVRNGCDKFVVDLDSKTCSCRKWDLIGFPCQ 68
           + P I+KK+E+     R+  P W+   K+EV  G DK+VVDL +  CSC KW + G PC 
Sbjct: 46  IMPMIRKKLEKRTSLARDWRPYWSSASKYEVMCGLDKYVVDLTAGECSCTKWQMSGIPCP 105

Query: 69  HAISCIFYKGHNVETYVDDCYKKKAYIACYEPLVYPTKGLNL 110
           HAISCI +KG N+E+YVDDCYKK+AYI CY+ +++   GL L
Sbjct: 106 HAISCIIFKGLNLESYVDDCYKKEAYIMCYKEVIHSLNGLEL 147

BLAST of MC09g_new0153 vs. ExPASy TrEMBL
Match: A0A7N2MLR3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 8.17e-31
Identity = 51/96 (53.12%), Postives = 65/96 (67.71%), Query Frame = 0

Query: 15  KKIEEEKLHCRNGLPMWAGDLKFEVRNGCDKFVVDLDSKTCSCRKWDLIGFPCQHAISCI 74
           K++ +EKL     L  WAG  KFEV+NG + F+VDL    CSCRKW++ G PC HAISCI
Sbjct: 2   KRLYKEKLGSGKWLACWAGHTKFEVKNGVNSFIVDLAEYKCSCRKWEITGIPCCHAISCI 61

Query: 75  FYKGHNVETYVDDCYKKKAYIACYEPLVYPTKGLNL 110
           F+   + E YV+DCYK  AY ACYEP++ P  G N+
Sbjct: 62  FFNREDAEKYVNDCYKVNAYKACYEPMIEPINGQNM 97

BLAST of MC09g_new0153 vs. ExPASy TrEMBL
Match: A0A445DXQ6 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g014430 PE=4 SV=1)

HSP 1 Score: 124 bits (311), Expect = 1.10e-30
Identity = 52/102 (50.98%), Postives = 72/102 (70.59%), Query Frame = 0

Query: 9   VCPKIKKKIEEEKLHCRNGLPMWAGDLKFEVRNGCDKFVVDLDSKTCSCRKWDLIGFPCQ 68
           + P I+KK+E++    R+  P W+   K+EV  G DK+VVDL +  CSCRKW + G PC 
Sbjct: 369 IMPMIRKKLEKQASLARDWRPYWSSSSKYEVMCGLDKYVVDLVAAECSCRKWQMSGIPCP 428

Query: 69  HAISCIFYKGHNVETYVDDCYKKKAYIACYEPLVYPTKGLNL 110
           HAISCI +KG N+E+YVDDCYKK+AY+ CY+ +++P  G  L
Sbjct: 429 HAISCITFKGLNLESYVDDCYKKEAYMRCYQEVIHPVNGPEL 470

BLAST of MC09g_new0153 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 48.9 bits (115), Expect = 3.0e-06
Identity = 21/61 (34.43%), Postives = 32/61 (52.46%), Query Frame = 0

Query: 44  DKFVVDLDSKTCSCRKWDLIGFPCQHAISCIFYKGHNVETYVDDCYKKKAYIACYEPLVY 103
           ++++V L+  TC+CRK+    FPC HA++       N   YVD+CY  + Y   Y     
Sbjct: 632 EEWIVQLNVSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFS 691

Query: 104 P 105
           P
Sbjct: 692 P 692

BLAST of MC09g_new0153 vs. TAIR 10
Match: AT1G49920.1 (MuDR family transposase )

HSP 1 Score: 44.7 bits (104), Expect = 5.7e-05
Identity = 21/63 (33.33%), Postives = 30/63 (47.62%), Query Frame = 0

Query: 47  VVDLDSKTCSCRKWDLIGFPCQHAISCIFYKGHNVETYVDDCYKKKAYIACYEPLVYPTK 106
           +V L+  TC+C ++    FPC HA++       N   YVDDCY  + Y   Y     P  
Sbjct: 651 IVQLNDTTCTCGEFQKNKFPCLHALAVCDELKINPLQYVDDCYTVERYHKTYSAKFSPVP 710

Query: 107 GLN 110
            L+
Sbjct: 711 ELS 713

BLAST of MC09g_new0153 vs. TAIR 10
Match: AT1G64255.1 (MuDR family transposase )

HSP 1 Score: 40.8 bits (94), Expect = 8.2e-04
Identity = 20/55 (36.36%), Postives = 27/55 (49.09%), Query Frame = 0

Query: 37  FEVRNGCDK--FVVDLDSKTCSCRKWDLIGFPCQHAISCIFYKGHNVETYVDDCY 90
           F+V    DK   +V L   +C+C  +    FPC HA++       N   YVDDCY
Sbjct: 632 FQVATALDKGECIVQLSDCSCTCGDFQRYKFPCLHALAVCKKLKFNPLQYVDDCY 686

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023913521.11.80e-4054.55uncharacterized protein LOC112025090 [Quercus suber][more]
XP_030936973.16.67e-4053.64uncharacterized protein LOC115962214 [Quercus lobata][more]
XP_023885703.12.24e-3855.45uncharacterized protein LOC111997793 [Quercus suber][more]
XP_030938481.11.52e-3753.64uncharacterized protein LOC115963572 [Quercus lobata][more]
XP_030923097.12.01e-3753.64uncharacterized protein LOC115949981 [Quercus lobata][more]
Match NameE-valueIdentityDescription
A0A7N2RAY51.78e-3753.64SWIM-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A445ANU12.43e-3248.62SWIM-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B01g05220... [more]
A0A445EUN91.22e-3150.98SWIM-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A01g00397... [more]
A0A7N2MLR38.17e-3153.13Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A445DXQ61.10e-3050.98Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A03g014430 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G64260.13.0e-0634.43MuDR family transposase [more]
AT1G49920.15.7e-0533.33MuDR family transposase [more]
AT1G64255.18.2e-0436.36MuDR family transposase [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006564Zinc finger, PMZ-typeSMARTSM0057526again6coord: 53..80
e-value: 4.1E-7
score: 39.6
IPR007527Zinc finger, SWIM-typePFAMPF04434SWIMcoord: 46..71
e-value: 1.2E-6
score: 28.0
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 46..78
score: 10.22472

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g_new0153.1MC09g_new0153.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding