MC09g_new0130 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g_new0130
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionFAS1 domain-containing protein
LocationMC09: 5397121 .. 5398321 (-)
RNA-Seq ExpressionMC09g_new0130
SyntenyMC09g_new0130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCACATGCGTGAACAGCAGGAATTGTTGCTACAACGAGGAATTATTGGTTGTTATGCCCTTAAAAATCGTAAGCATAGAAAACTTTGAACGCAAAATATTAGAAGCAGTCTAAATTTGTGAATTTTTCTATATATAACTTCCCATCAATGAAGTATATATAGGGCTTCTGATCATCTAAAATTCTCAAGCACCCACAGCTTCGTTATAATTGCGTAATAAACCATCATCTGTGAAACCAAGCTTGTGCCTCAGACTTTAAGATATATTCTTCGCCATGGCAATGGCAAGAGGCTCTAAGCTTTTTCACACCCTTTTCTTAGTGTTTGTTTGGCAGTTTTATGGGGAGGTGGGTGCTACTTTCAATGATGTCACGGGCATTGCAGAGGCTGACTTCAATCGCCCTTTTTCCTTCCGTGCATTCGGATCACATGGTGAAGACTTGAAGAGTCCTGTGGGAGCACCAGTACAGGGACCCGTAGGAGTGAGTCCAGTGGAGGGTCCCGCCGCCGTCGGAGCTGCTCCCGTGGAGGGTCCCGTTGCCACCGTGGAGGGTCCCGTTGCCGCCGTGGAAGGTCCAGTGGAAGGTCCCAACGCAGACGTGGAAGGTCCAGTGGAGGGTCCCACCGCCATCGTGGAAGCCCCAGTGGAAAGTCCCAATGCAGATGTGGAAGGTCTAGTGGAGGGTCCCACCGCCATCGTGGAAGCCCCAATGGAGGGTCCCAACGCAGACGTGGAAGGTCCAGTGGAGGGTCCCAATGCCGTCATGGAAGGTCCAGTGGAGGGTCCCGCCGTCGCCTTGGAAGGTCCAGTGGAGGGTCCCGTTGTCGTCGGAGTAGCGCCAATCGAGGGTCCCGTCGTTGCCGGAGCAGCCCCAGCGGGTCCCACCGCCACCGGAGTAGCTCCCGTGGAAGGTCCCGTCGCAGGAGCAGCAATGTAGAGTCATATCGAAGCAGCTATGTAGAGTCCATGAACAAAAATTTAAAGTACGTGGACTATAGTATTTAAACGTCAATGATGTGGTAAATTTATTAATTTTACATAGCTATTTTTTTTGTTACTCTAATTTGTTTGGAAGCAAGAAAAATATAATAATAATAATAAAAAAAAAAACTTGCCAGATCCTAAAAAATCAGTCATCTTTTCTAAAAGTCCAATTCTAATTATATAAACATTTCTTTATTTGAAATAGAAGATGATCA

mRNA sequence

ATGGCAATGGCAAGAGGCTCTAAGCTTTTTCACACCCTTTTCTTAGTGTTTGTTTGGCAGTTTTATGGGGAGGTGGGTGCTACTTTCAATGATGTCACGGGCATTGCAGAGGCTGACTTCAATCGCCCTTTTTCCTTCCGTGCATTCGGATCACATGGTGAAGACTTGAAGAGTCCTGTGGGAGCACCAGTACAGGGACCCGTAGGAGTGAGTCCAGTGGAGGGTCCCGCCGCCGTCGGAGCTGCTCCCGTGGAGGGTCCCGTTGCCACCGTGGAGGGTCCCGTTGCCGCCGTGGAAGGTCCAGTGGAAGGTCCCAACGCAGACGTGGAAGGTCCAGTGGAGGGTCCCACCGCCATCGTGGAAGCCCCAGTGGAAAGTCCCAATGCAGATGTGGAAGGTCTAGTGGAGGGTCCCACCGCCATCGTGGAAGCCCCAATGGAGGGTCCCAACGCAGACGTGGAAGGTCCAGTGGAGGGTCCCAATGCCGTCATGGAAGGTCCAGTGGAGGGTCCCGCCGTCGCCTTGGAAGGTCCAGTGGAGGGTCCCGTTGTCGTCGGAGTAGCGCCAATCGAGGGTCCCGTCGTTGCCGGAGCAGCCCCAGCGGGTCCCACCGCCACCGGAGTAGCTCCCGTGGAAGGTCCCGTCGCAGGAGCAGCAATGTAG

Coding sequence (CDS)

ATGGCAATGGCAAGAGGCTCTAAGCTTTTTCACACCCTTTTCTTAGTGTTTGTTTGGCAGTTTTATGGGGAGGTGGGTGCTACTTTCAATGATGTCACGGGCATTGCAGAGGCTGACTTCAATCGCCCTTTTTCCTTCCGTGCATTCGGATCACATGGTGAAGACTTGAAGAGTCCTGTGGGAGCACCAGTACAGGGACCCGTAGGAGTGAGTCCAGTGGAGGGTCCCGCCGCCGTCGGAGCTGCTCCCGTGGAGGGTCCCGTTGCCACCGTGGAGGGTCCCGTTGCCGCCGTGGAAGGTCCAGTGGAAGGTCCCAACGCAGACGTGGAAGGTCCAGTGGAGGGTCCCACCGCCATCGTGGAAGCCCCAGTGGAAAGTCCCAATGCAGATGTGGAAGGTCTAGTGGAGGGTCCCACCGCCATCGTGGAAGCCCCAATGGAGGGTCCCAACGCAGACGTGGAAGGTCCAGTGGAGGGTCCCAATGCCGTCATGGAAGGTCCAGTGGAGGGTCCCGCCGTCGCCTTGGAAGGTCCAGTGGAGGGTCCCGTTGTCGTCGGAGTAGCGCCAATCGAGGGTCCCGTCGTTGCCGGAGCAGCCCCAGCGGGTCCCACCGCCACCGGAGTAGCTCCCGTGGAAGGTCCCGTCGCAGGAGCAGCAATGTAG

Protein sequence

MAMARGSKLFHTLFLVFVWQFYGEVGATFNDVTGIAEADFNRPFSFRAFGSHGEDLKSPVGAPVQGPVGVSPVEGPAAVGAAPVEGPVATVEGPVAAVEGPVEGPNADVEGPVEGPTAIVEAPVESPNADVEGLVEGPTAIVEAPMEGPNADVEGPVEGPNAVMEGPVEGPAVALEGPVEGPVVVGVAPIEGPVVAGAAPAGPTATGVAPVEGPVAGAAM
Homology
BLAST of MC09g_new0130 vs. NCBI nr
Match: THU57569.1 (hypothetical protein C4D60_Mb03t04900 [Musa balbisiana])

HSP 1 Score: 111 bits (277), Expect = 4.99e-24
Identity = 76/172 (44.19%), Postives = 88/172 (51.16%), Query Frame = 0

Query: 50   GSHGEDLKSPVGAPVQGPVGVS--PVEGPAAVGAAPVEGPV----ATVEGPVAAVEGPVE 109
            G+  E  +S  GAP +GP   +  P EGP +   AP EGP     A  EGP ++   P E
Sbjct: 925  GAPAEGPESSAGAPAEGPESSAGAPAEGPESSAGAPAEGPESSAGAPAEGPESSAGAPAE 984

Query: 110  GPNADVEGPVEGPTAIVEAPVESPNADVEGLVEGPTAIVEAPMEGPNADVEGPVEGPNAV 169
            GP +    P EGP  I  APVE P       VEGP  I  AP+EGP      PVEGP  +
Sbjct: 985  GPESSAGAPAEGPEPITAAPVEGPEPITAAPVEGPEPITAAPVEGPEPITAAPVEGPEPI 1044

Query: 170  MEGPVEGPAVALEGPVEGPVVVGVAPIEGPVVAGAAPA-GPTATGVAPVEGP 214
               PVEGP      PVEGP  +  AP+EGP    AAP  GP     APVEGP
Sbjct: 1045 TAAPVEGPEPITAAPVEGPEPITAAPVEGPEPITAAPVEGPEPITAAPVEGP 1096

BLAST of MC09g_new0130 vs. NCBI nr
Match: XP_022146267.1 (uncharacterized protein LOC111015518 [Momordica charantia])

HSP 1 Score: 104 bits (260), Expect = 7.27e-23
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 1  MAMARGSKLFHTLFLVFVWQFYGEVGATFNDVTGIAEADFNRPFSFRAFGSHGEDLKSPV 60
          MAM RGSK FHTLFLVFVWQF GEVGATFND+TG+A+   + PFSFRAFG HG D +SP 
Sbjct: 1  MAMGRGSKFFHTLFLVFVWQFCGEVGATFNDITGVAKTGLHEPFSFRAFGPHGGDSQSPT 60

Query: 61 GAPVQGPV 68
           AP+Q P+
Sbjct: 61 EAPMQSPI 68

BLAST of MC09g_new0130 vs. NCBI nr
Match: RWW52669.1 (hypothetical protein BHE74_00040897 [Ensete ventricosum])

HSP 1 Score: 97.8 bits (242), Expect = 1.84e-19
Identity = 77/195 (39.49%), Postives = 86/195 (44.10%), Query Frame = 0

Query: 30  NDVTGIAEADFNRPFSFRAFGSHGEDLKSP---VGAPVQGPVGVS--PVEGPAAVGAAPV 89
           N   G  ++  N P       S G  +++P    GAPV+GP   +  P EGP     AP 
Sbjct: 233 NTPAGAPQSSANTPVE-APLSSTGAPVEAPEPSTGAPVEGPEPTTGAPAEGPEPTTGAPA 292

Query: 90  EGP----VATVEGPVAAVEGPVEGPNADVEGPVEGPTAIVEAPVESPNADVEGLVEGPTA 149
           EGP     A  EGP  +   P EGP      PVEGP     APV +P        EGP  
Sbjct: 293 EGPEPSTAAPAEGPEPSTGAPAEGPEPSTAAPVEGPEPTAAAPVGAPKPSSRAPAEGPEP 352

Query: 150 IVEAPMEGPNADVEGPVEGPNAVMEGPVEGPAVALEGPVEGPVVVGVAPIEGPVVAGAAP 209
              AP EGP      P EGP      P EGP      PVEGP     AP EGP    AAP
Sbjct: 353 STGAPAEGPEPSTGAPAEGPEPSTGAPAEGPEPTTAAPVEGPEPSTGAPAEGPEPTTAAP 412

Query: 210 A-GPTATGVAPVEGP 214
           A GP  T  AP EGP
Sbjct: 413 AEGPEPTTAAPAEGP 426

BLAST of MC09g_new0130 vs. NCBI nr
Match: XP_042189141.1 (protein ELYS [Callorhinchus milii])

HSP 1 Score: 94.0 bits (232), Expect = 5.27e-18
Identity = 69/115 (60.00%), Postives = 75/115 (65.22%), Query Frame = 0

Query: 84   VEGPVATVEGPVAAVEGP---VEGPNADVEGP---VEGPTAIVEAP---VESPNADVEGL 143
            VEGP A VEGP A VEGP   VEGP A+VEGP   VEGP A VE P   VE P A+VEG 
Sbjct: 1356 VEGPAAEVEGPAAEVEGPAAEVEGPAAEVEGPAAEVEGPAAEVEGPAAEVEGPAAEVEGP 1415

Query: 144  ---VEGPTAIVEAP---MEGPNADVEGP---VEGPNAVMEGP---VEGPAVALEG 177
               VEGP A VE P   +EGP A+VEGP   VEGP A +EGP   VEGPA  +EG
Sbjct: 1416 AAEVEGPAAEVEGPAAEVEGPAAEVEGPAAEVEGPAAEVEGPAAEVEGPAAEVEG 1470

BLAST of MC09g_new0130 vs. NCBI nr
Match: XP_017024337.2 (collagen alpha-1(III) chain [Drosophila kikkawai])

HSP 1 Score: 93.6 bits (231), Expect = 6.94e-18
Identity = 78/160 (48.75%), Postives = 82/160 (51.25%), Query Frame = 0

Query: 61  GAPVQGPVGV--SPVEGPAAVGAAPVEG----PVATVEGPVAAVEGPVEGPNADVEGPVE 120
           GAPV+G      +PVEG  A   APVEG    P A VEG  AA   PVEG  A    PVE
Sbjct: 715 GAPVEGSTAAPGAPVEGSTAAPGAPVEGSTAAPGAPVEGSTAAPGAPVEGSTAAPGAPVE 774

Query: 121 GPTAIVEAPVESPNADVEGLVEGPTAIVEAPMEGPNADVEGPVEGPNAVMEGPVEGPAVA 180
           G TA   APVE   A     VEG TA   AP+EG  A    PVEG  A    PVEG   A
Sbjct: 775 GSTAAPGAPVEGSTAAPGAPVEGSTAAPGAPVEGSTAAPGAPVEGSTAAPGAPVEGSTAA 834

Query: 181 LEGPVEGPVVVGVAPIEGPVVAGAAPA-GPTATGVAPVEG 213
            E PVEG      AP+EG   A  AP  G TA   APVEG
Sbjct: 835 PEAPVEGSTAAPGAPVEGSTAAPGAPVEGSTAAPGAPVEG 874

BLAST of MC09g_new0130 vs. ExPASy TrEMBL
Match: A0A4S8J8N7 (FAS1 domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb03t04900 PE=3 SV=1)

HSP 1 Score: 111 bits (277), Expect = 2.42e-24
Identity = 76/172 (44.19%), Postives = 88/172 (51.16%), Query Frame = 0

Query: 50   GSHGEDLKSPVGAPVQGPVGVS--PVEGPAAVGAAPVEGPV----ATVEGPVAAVEGPVE 109
            G+  E  +S  GAP +GP   +  P EGP +   AP EGP     A  EGP ++   P E
Sbjct: 925  GAPAEGPESSAGAPAEGPESSAGAPAEGPESSAGAPAEGPESSAGAPAEGPESSAGAPAE 984

Query: 110  GPNADVEGPVEGPTAIVEAPVESPNADVEGLVEGPTAIVEAPMEGPNADVEGPVEGPNAV 169
            GP +    P EGP  I  APVE P       VEGP  I  AP+EGP      PVEGP  +
Sbjct: 985  GPESSAGAPAEGPEPITAAPVEGPEPITAAPVEGPEPITAAPVEGPEPITAAPVEGPEPI 1044

Query: 170  MEGPVEGPAVALEGPVEGPVVVGVAPIEGPVVAGAAPA-GPTATGVAPVEGP 214
               PVEGP      PVEGP  +  AP+EGP    AAP  GP     APVEGP
Sbjct: 1045 TAAPVEGPEPITAAPVEGPEPITAAPVEGPEPITAAPVEGPEPITAAPVEGP 1096

BLAST of MC09g_new0130 vs. ExPASy TrEMBL
Match: A0A6J1CZ48 (uncharacterized protein LOC111015518 OS=Momordica charantia OX=3673 GN=LOC111015518 PE=4 SV=1)

HSP 1 Score: 104 bits (260), Expect = 3.52e-23
Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 0

Query: 1  MAMARGSKLFHTLFLVFVWQFYGEVGATFNDVTGIAEADFNRPFSFRAFGSHGEDLKSPV 60
          MAM RGSK FHTLFLVFVWQF GEVGATFND+TG+A+   + PFSFRAFG HG D +SP 
Sbjct: 1  MAMGRGSKFFHTLFLVFVWQFCGEVGATFNDITGVAKTGLHEPFSFRAFGPHGGDSQSPT 60

Query: 61 GAPVQGPV 68
           AP+Q P+
Sbjct: 61 EAPMQSPI 68

BLAST of MC09g_new0130 vs. ExPASy TrEMBL
Match: A0A444CZU8 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00046322 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.90e-18
Identity = 78/206 (37.86%), Postives = 90/206 (43.69%), Query Frame = 0

Query: 30  NDVTGIAEADFNRPFSFRAFGSHGEDLKSP---VGAPVQGPVGVS--PVEGPAAVGAAPV 89
           N   G  ++  N P       S G  +++P    GAPV+GP   +  P EGP     AP 
Sbjct: 214 NTPAGAPQSSANTPVE-APLSSTGAPVEAPEPSTGAPVEGPEPTTGAPAEGPEPTTGAPA 273

Query: 90  EGP----VATVEGPVAAVEGPVEGPNADVEGPVEGPTAIVEAPVESPNADVEGLVEGPTA 149
           EGP     A  EGP  +   P EGP      PVEGP     APV +P        EGP  
Sbjct: 274 EGPEPSTAAPAEGPEPSTGAPAEGPEPSTAAPVEGPEPTAAAPVGAPKPSSRAPAEGPEP 333

Query: 150 IVEAPMEGPNADVEGPVEGPN----AVMEGP-------VEGPAVALEGPVEGPVVVGVAP 209
              AP EGP      P EGP     A  EGP        EGP  +   P EGP     AP
Sbjct: 334 STGAPAEGPEPSTGAPAEGPEPSTGAPAEGPEPSTGAPAEGPEPSTGAPAEGPEPTTAAP 393

Query: 210 IEGPVVAGAAPA-GPTATGVAPVEGP 214
           +EGP  +  APA GP  T  AP EGP
Sbjct: 394 VEGPEPSTGAPAEGPEPTTAAPAEGP 418

BLAST of MC09g_new0130 vs. ExPASy TrEMBL
Match: A0A6V7V628 (Hypothetical protein OS=Meloidogyne enterolobii OX=390850 GN=MENT_LOCUS21026 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.37e-17
Identity = 70/162 (43.21%), Postives = 92/162 (56.79%), Query Frame = 0

Query: 61  GAPVQGPVGV--SPVEGPAAVGAAPVEGPV----ATVEGPVAAVEGPVEGPNADVEGPVE 120
           GAPV GP G   + V+ PA +  APV+GP     A V+GP      PV+GP      PV+
Sbjct: 24  GAPVVGPAGYVGASVDVPAVLDGAPVDGPAVLDGAPVDGPAVLDGAPVDGPAVLDGAPVD 83

Query: 121 GPTAIVEAPVESPNADVEGLVEGPTAIVEAPMEGPNADVEGPVEGPNAVMEG-PVEGPAV 180
           GP  +  APV+ P       V+GP  +  AP++GP      PV+GP AV++G PV+GPAV
Sbjct: 84  GPAVLDGAPVDGPAVLDGAPVDGPAVLDGAPVDGPAVLDGAPVDGP-AVLDGAPVDGPAV 143

Query: 181 ALEGPVEGPVVVGVAPIEGPVVAGAAPA-GPTATGVAPVEGP 214
               PV+GP V+  AP++GP V   AP  GP     APV+GP
Sbjct: 144 LDGAPVDGPAVLDGAPVDGPAVLDGAPVDGPAVLDGAPVDGP 184

BLAST of MC09g_new0130 vs. ExPASy TrEMBL
Match: A0A6V7V443 (Hypothetical protein OS=Meloidogyne enterolobii OX=390850 GN=MENT_LOCUS21025 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.65e-17
Identity = 71/173 (41.04%), Postives = 93/173 (53.76%), Query Frame = 0

Query: 61  GAPVQGPVGV-------------SPVEGPAAVGAAPVEGPV----ATVEGPVAAVEGPVE 120
           GAPV GP G              +PV+GPA +  APV+GP     A V+GP      PV+
Sbjct: 17  GAPVVGPAGYVGASVDVPAVLDGAPVDGPAELDGAPVDGPAELDGAPVDGPAVLDGAPVD 76

Query: 121 GPNADVEGPVEGPTAIVEAPVESPNADVEGLVEGPTAIVEAPMEGPNADVEGPVEGPNAV 180
           GP      PV+GP  +  APV+ P       V+GP  +  AP++GP      PV+GP AV
Sbjct: 77  GPAVLDGAPVDGPAVLDGAPVDGPAVLDGAPVDGPAVLDGAPVDGPAVLDGAPVDGP-AV 136

Query: 181 MEG-PVEGPAVALEGPVEGPVVVGVAPIEGPVVAGAAPA-GPTATGVAPVEGP 214
           ++G PV+GPAV    PV+GP  +  AP++GP V   AP  GP     APV+GP
Sbjct: 137 LDGAPVDGPAVLDGAPVDGPAELDGAPVDGPAVLDGAPVDGPAVLDGAPVDGP 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
THU57569.14.99e-2444.19hypothetical protein C4D60_Mb03t04900 [Musa balbisiana][more]
XP_022146267.17.27e-2370.59uncharacterized protein LOC111015518 [Momordica charantia][more]
RWW52669.11.84e-1939.49hypothetical protein BHE74_00040897 [Ensete ventricosum][more]
XP_042189141.15.27e-1860.00protein ELYS [Callorhinchus milii][more]
XP_017024337.26.94e-1848.75collagen alpha-1(III) chain [Drosophila kikkawai][more]
Match NameE-valueIdentityDescription
A0A4S8J8N72.42e-2444.19FAS1 domain-containing protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb03t04900 P... [more]
A0A6J1CZ483.52e-2370.59uncharacterized protein LOC111015518 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A444CZU84.90e-1837.86Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00046322 PE=4 SV=1[more]
A0A6V7V6281.37e-1743.21Hypothetical protein OS=Meloidogyne enterolobii OX=390850 GN=MENT_LOCUS21026 PE=... [more]
A0A6V7V4431.65e-1741.04Hypothetical protein OS=Meloidogyne enterolobii OX=390850 GN=MENT_LOCUS21025 PE=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g_new0130.1MC09g_new0130.1mRNA